Wall clock time and date at job start Tue Mar 31 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.29027 * 2 1 4 4 C 1.34779 * 120.00108 * 59.29392 * 3 2 1 5 5 O 1.21619 * 119.99799 * 0.02562 * 4 3 2 6 6 C 1.47166 * 120.00064 * 180.02562 * 4 3 2 7 7 C 1.38243 * 128.47527 * 180.02562 * 6 4 3 8 8 N 1.31244 * 111.88934 * 179.97438 * 7 6 4 9 9 N 1.27331 * 120.03732 * 0.02562 * 8 7 6 10 10 S 1.56632 * 109.74193 * 359.97438 * 9 8 7 11 11 C 1.54254 * 110.32393 * 122.12620 * 2 1 3 12 12 C 1.54615 * 104.94928 * 119.02269 * 11 2 1 13 13 N 1.48562 * 104.63448 * 23.78313 * 12 11 2 14 14 C 1.46902 * 110.99908 * 200.99533 * 13 12 11 15 15 C 1.50700 * 109.47262 * 285.41794 * 14 13 12 16 16 O 1.21291 * 119.99622 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99850 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99912 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99824 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47060 * 90.00009 * 22 20 18 24 24 H 1.48503 * 109.46979 * 210.00054 * 22 20 18 25 25 H 1.48495 * 109.47155 * 329.99720 * 22 20 18 26 26 C 1.48562 * 104.21856 * 320.55016 * 13 12 11 27 27 H 1.09002 * 109.47004 * 60.69804 * 1 2 3 28 28 H 1.09001 * 109.47397 * 180.70233 * 1 2 3 29 29 H 1.08996 * 109.47030 * 300.70558 * 1 2 3 30 30 H 0.97001 * 120.00171 * 239.30429 * 3 2 1 31 31 H 1.08003 * 124.05378 * 0.24289 * 7 6 4 32 32 H 1.09001 * 110.32726 * 237.89244 * 11 2 1 33 33 H 1.08998 * 110.32365 * 0.10041 * 11 2 1 34 34 H 1.09001 * 110.36221 * 265.00455 * 12 11 2 35 35 H 1.08999 * 110.51902 * 142.63594 * 12 11 2 36 36 H 1.08999 * 109.46795 * 45.42070 * 14 13 12 37 37 H 1.08998 * 109.46814 * 165.41082 * 14 13 12 38 38 H 0.97002 * 120.00295 * 359.97438 * 17 15 14 39 39 H 0.96996 * 119.99959 * 179.97438 * 21 20 18 40 40 H 1.08995 * 110.41475 * 280.70400 * 26 13 12 41 41 H 1.09008 * 110.40982 * 158.26119 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7127 2.2129 1.0036 5 8 0.9977 1.8289 1.9094 6 6 2.2226 3.5934 1.0033 7 6 2.0028 4.5917 1.9340 8 7 2.6183 5.7052 1.6118 9 7 3.3133 5.7640 0.5465 10 16 3.2693 4.3828 -0.1908 11 6 2.0657 -0.7692 1.2250 12 6 2.8839 -1.9405 0.6340 13 7 3.2708 -1.4802 -0.7245 14 6 3.6091 -2.6183 -1.5895 15 6 4.9599 -3.1612 -1.2000 16 8 5.5799 -2.6500 -0.2915 17 7 5.4793 -4.2141 -1.8618 18 6 6.7084 -4.7077 -1.5078 19 1 7.2605 -4.2525 -0.6988 20 6 7.2437 -5.7936 -2.1897 21 7 8.4220 -6.2664 -1.8507 22 14 6.2884 -6.5813 -3.5884 23 1 6.6466 -5.9179 -4.8678 24 1 6.6269 -8.0250 -3.6676 25 1 4.8322 -6.4272 -3.3417 26 6 2.0662 -0.7699 -1.2260 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 2.6084 1.6803 -0.7223 31 1 1.4007 4.4686 2.8221 32 1 2.7067 -0.1245 1.8263 33 1 1.2387 -1.1483 1.8254 34 1 2.2692 -2.8384 0.5704 35 1 3.7711 -2.1300 1.2381 36 1 2.8568 -3.3985 -1.4741 37 1 3.6353 -2.2898 -2.6285 38 1 4.9836 -4.6227 -2.5886 39 1 8.7955 -7.0246 -2.3265 40 1 1.3236 -1.4846 -1.5807 41 1 2.3377 -0.0761 -2.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500182840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:31 Heat of formation + Delta-G solvation = 27.390655 kcal Electronic energy + Delta-G solvation = -26653.286205 eV Core-core repulsion = 22696.776694 eV Total energy + Delta-G solvation = -3956.509510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25856 -40.59723 -38.94773 -37.79319 -34.89044 -33.91037 -32.81944 -31.76817 -31.49317 -29.75214 -27.87188 -27.84023 -25.54214 -24.01914 -23.46009 -21.62223 -21.03640 -20.17209 -19.45487 -19.28781 -18.33209 -17.83058 -16.66873 -16.27525 -16.04689 -15.61294 -15.46905 -15.05328 -14.82395 -14.73989 -14.51451 -14.16294 -13.51982 -13.25792 -13.22934 -13.07780 -12.73086 -12.58835 -12.50745 -12.30244 -12.14355 -11.99320 -11.67643 -11.29245 -11.24303 -11.10543 -10.84215 -10.66934 -10.62835 -10.48645 -10.28575 -10.22409 -10.00379 -9.58951 -9.45866 -8.71538 -8.22960 -8.18275 -6.33472 -3.85098 -0.66740 0.40607 1.08072 1.58371 2.54814 2.63362 2.99001 3.03608 3.12294 3.62238 3.70012 3.84327 4.07418 4.10898 4.28760 4.38585 4.56381 4.71595 4.85598 5.16160 5.17122 5.17952 5.19999 5.31716 5.33257 5.48433 5.53037 5.60152 5.60532 5.81473 5.87265 5.95391 6.06478 6.21825 6.29071 6.87564 6.93515 7.03062 7.24238 7.55438 7.68638 8.11632 8.57569 8.92898 9.39769 9.80729 10.79703 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002378 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.297380 B =11771.859267 C =12520.697964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.174 3.826 3 N -0.702 5.702 4 C 0.604 3.396 5 O -0.512 6.512 6 C -0.287 4.287 7 C 0.074 3.926 8 N -0.253 5.253 9 N -0.257 5.257 10 S 0.429 5.571 11 C -0.120 4.120 12 C 0.035 3.965 13 N -0.483 5.483 14 C 0.031 3.969 15 C 0.454 3.546 16 O -0.558 6.558 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.027 3.973 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.402 0.598 31 H 0.216 0.784 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.062 0.938 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.613 16.139 -0.727 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.088 3.912 3 N -0.354 5.354 4 C 0.387 3.613 5 O -0.388 6.388 6 C -0.428 4.428 7 C -0.093 4.093 8 N -0.117 5.117 9 N -0.238 5.238 10 S 0.564 5.436 11 C -0.159 4.159 12 C -0.093 4.093 13 N -0.206 5.206 14 C -0.101 4.101 15 C 0.239 3.761 16 O -0.439 6.439 17 N -0.232 5.232 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.237 0.763 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.922 17.636 -0.509 24.446 hybrid contribution -1.792 -1.959 -0.662 2.736 sum -18.714 15.677 -1.171 24.441 Atomic orbital electron populations 1.22228 0.93097 1.02970 1.03500 1.21112 0.93843 0.79960 0.96248 1.46010 1.51829 1.12276 1.25270 1.16418 0.80399 0.81854 0.82629 1.90827 1.36691 1.75862 1.35459 1.28122 1.09906 1.01945 1.02815 1.24479 0.98427 0.85522 1.00918 1.70711 1.07709 1.24460 1.08796 1.78881 1.19089 1.18909 1.06929 1.82725 1.32607 1.02874 1.25387 1.22750 0.99721 0.96989 0.96438 1.23272 0.99728 0.95389 0.90872 1.65157 1.30550 1.22948 1.01985 1.22107 0.97097 0.92820 0.98096 1.19562 0.87683 0.82912 0.85934 1.90561 1.61967 1.59963 1.31379 1.42207 1.19106 1.29374 1.32533 1.19415 0.92745 1.12786 1.18323 0.86298 1.25039 0.96092 0.96917 0.98153 1.69621 1.16190 1.25258 1.41087 0.86673 0.79759 0.80059 0.82875 1.19621 1.20206 1.19572 1.23453 0.92692 0.97933 0.96074 0.92376 0.91282 0.89979 0.76282 0.76773 0.90398 0.90294 0.93969 0.88227 0.92836 0.89120 0.79779 0.91612 0.91969 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.15 37.16 0.30 -1.03 16 2 C 0.17 1.67 1.01 -130.44 -0.13 1.54 16 3 N -0.70 -6.23 5.09 -47.47 -0.24 -6.48 16 4 C 0.60 6.00 6.98 -12.63 -0.09 5.91 16 5 O -0.51 -6.31 14.26 5.26 0.08 -6.24 16 6 C -0.29 -2.47 6.81 -35.96 -0.25 -2.72 16 7 C 0.07 0.64 11.55 -17.80 -0.21 0.43 16 8 N -0.25 -2.63 11.54 30.36 0.35 -2.28 16 9 N -0.26 -2.62 12.51 60.35 0.75 -1.86 16 10 S 0.43 3.17 23.05 -107.50 -2.48 0.69 16 11 C -0.12 -1.41 5.54 -25.23 -0.14 -1.55 16 12 C 0.04 0.49 5.93 -2.05 -0.01 0.48 16 13 N -0.48 -6.78 4.98 -231.25 -1.15 -7.93 16 14 C 0.03 0.47 5.32 -4.98 -0.03 0.44 16 15 C 0.45 9.82 7.63 -10.99 -0.08 9.73 16 16 O -0.56 -14.39 14.80 5.55 0.08 -14.31 16 17 N -0.59 -13.61 5.09 -10.96 -0.06 -13.67 16 18 C -0.30 -8.41 10.16 -14.93 -0.15 -8.56 16 19 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 21 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 22 Si 0.88 18.90 27.74 -169.99 -4.71 14.18 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 26 C 0.03 0.26 5.65 -2.18 -0.01 0.25 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.81 6.17 -51.93 -0.32 0.49 16 30 H 0.40 2.88 7.70 -40.82 -0.31 2.57 16 31 H 0.22 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.08 1.04 7.40 -51.93 -0.38 0.65 16 33 H 0.08 0.86 7.71 -51.93 -0.40 0.46 16 34 H 0.04 0.55 7.75 -51.93 -0.40 0.15 16 35 H 0.10 1.73 7.23 -51.93 -0.38 1.36 16 36 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 37 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.37 7.41 5.76 -40.82 -0.24 7.17 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.06 0.52 7.72 -51.93 -0.40 0.12 16 41 H 0.09 0.71 7.76 -51.92 -0.40 0.30 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -34.31 355.06 -7.03 -41.34 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.88 Total: 9.93 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.89 Total: 5.93 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.43 Total: -56.88 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.16 Total: -20.55 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.18 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.48 Total: 0.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.31 -7.03 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.730 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds