Wall clock time and date at job start Tue Mar 31 2020 22:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.29027 * 2 1 4 4 C 1.34779 * 120.00108 * 59.29392 * 3 2 1 5 5 O 1.21619 * 119.99799 * 0.02562 * 4 3 2 6 6 C 1.47166 * 120.00064 * 180.02562 * 4 3 2 7 7 C 1.38243 * 128.47527 * 180.02562 * 6 4 3 8 8 N 1.31244 * 111.88934 * 179.97438 * 7 6 4 9 9 N 1.27331 * 120.03732 * 0.02562 * 8 7 6 10 10 S 1.56632 * 109.74193 * 359.97438 * 9 8 7 11 11 C 1.54254 * 110.32393 * 122.12620 * 2 1 3 12 12 C 1.54615 * 104.94928 * 119.02269 * 11 2 1 13 13 N 1.48562 * 104.63448 * 23.78313 * 12 11 2 14 14 C 1.46902 * 110.99908 * 200.99533 * 13 12 11 15 15 C 1.50700 * 109.47262 * 285.41794 * 14 13 12 16 16 O 1.21291 * 119.99622 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99850 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99912 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99824 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47060 * 90.00009 * 22 20 18 24 24 H 1.48503 * 109.46979 * 210.00054 * 22 20 18 25 25 H 1.48495 * 109.47155 * 329.99720 * 22 20 18 26 26 C 1.48562 * 104.21856 * 320.55016 * 13 12 11 27 27 H 1.09002 * 109.47004 * 60.69804 * 1 2 3 28 28 H 1.09001 * 109.47397 * 180.70233 * 1 2 3 29 29 H 1.08996 * 109.47030 * 300.70558 * 1 2 3 30 30 H 0.97001 * 120.00171 * 239.30429 * 3 2 1 31 31 H 1.08003 * 124.05378 * 0.24289 * 7 6 4 32 32 H 1.09001 * 110.32726 * 237.89244 * 11 2 1 33 33 H 1.08998 * 110.32365 * 0.10041 * 11 2 1 34 34 H 1.09001 * 110.36221 * 265.00455 * 12 11 2 35 35 H 1.08999 * 110.51902 * 142.63594 * 12 11 2 36 36 H 1.08999 * 109.46795 * 45.42070 * 14 13 12 37 37 H 1.08998 * 109.46814 * 165.41082 * 14 13 12 38 38 H 0.97002 * 120.00295 * 359.97438 * 17 15 14 39 39 H 0.96996 * 119.99959 * 179.97438 * 21 20 18 40 40 H 1.08995 * 110.41475 * 280.70400 * 26 13 12 41 41 H 1.09008 * 110.40982 * 158.26119 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7127 2.2129 1.0036 5 8 0.9977 1.8289 1.9094 6 6 2.2226 3.5934 1.0033 7 6 2.0028 4.5917 1.9340 8 7 2.6183 5.7052 1.6118 9 7 3.3133 5.7640 0.5465 10 16 3.2693 4.3828 -0.1908 11 6 2.0657 -0.7692 1.2250 12 6 2.8839 -1.9405 0.6340 13 7 3.2708 -1.4802 -0.7245 14 6 3.6091 -2.6183 -1.5895 15 6 4.9599 -3.1612 -1.2000 16 8 5.5799 -2.6500 -0.2915 17 7 5.4793 -4.2141 -1.8618 18 6 6.7084 -4.7077 -1.5078 19 1 7.2605 -4.2525 -0.6988 20 6 7.2437 -5.7936 -2.1897 21 7 8.4220 -6.2664 -1.8507 22 14 6.2884 -6.5813 -3.5884 23 1 6.6466 -5.9179 -4.8678 24 1 6.6269 -8.0250 -3.6676 25 1 4.8322 -6.4272 -3.3417 26 6 2.0662 -0.7699 -1.2260 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 2.6084 1.6803 -0.7223 31 1 1.4007 4.4686 2.8221 32 1 2.7067 -0.1245 1.8263 33 1 1.2387 -1.1483 1.8254 34 1 2.2692 -2.8384 0.5704 35 1 3.7711 -2.1300 1.2381 36 1 2.8568 -3.3985 -1.4741 37 1 3.6353 -2.2898 -2.6285 38 1 4.9836 -4.6227 -2.5886 39 1 8.7955 -7.0246 -2.3265 40 1 1.3236 -1.4846 -1.5807 41 1 2.3377 -0.0761 -2.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500182840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:30 Heat of formation + Delta-G solvation = -2.267618 kcal Electronic energy + Delta-G solvation = -26654.572284 eV Core-core repulsion = 22696.776694 eV Total energy + Delta-G solvation = -3957.795589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98202 -41.42715 -40.31910 -39.06785 -36.11092 -35.57212 -33.75571 -33.56240 -32.41119 -30.66516 -29.05219 -28.55315 -26.86227 -25.36040 -24.29345 -22.68659 -21.79329 -21.25043 -20.89226 -20.20350 -19.99854 -18.62456 -17.73883 -17.41493 -16.99976 -16.86693 -16.42603 -16.27677 -16.02765 -15.71275 -15.51848 -15.28350 -15.03639 -14.56641 -14.41997 -14.10462 -13.87730 -13.80571 -13.47032 -13.26599 -13.06386 -12.98281 -12.88960 -12.68051 -12.39557 -12.17823 -12.02145 -11.95343 -11.84029 -11.45964 -11.36132 -11.17712 -11.06919 -10.90983 -10.39450 -10.22643 -10.20186 -9.35069 -8.38692 -5.99439 -1.36029 -0.24045 0.41212 0.87830 1.31625 1.37982 1.46566 1.80911 1.90347 2.01715 2.25441 2.66716 2.95610 3.17098 3.26947 3.37577 3.61216 3.70302 3.72002 4.00981 4.15375 4.26130 4.41701 4.42145 4.52261 4.57227 4.60486 4.69112 4.77723 4.86164 4.91461 5.11488 5.15473 5.33518 5.45579 5.55276 5.86353 5.91319 6.03121 6.30924 6.55984 6.63244 6.92505 6.95898 7.44304 8.03020 8.79235 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002378 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.297380 B =11771.859267 C =12520.697964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 N -0.697 5.697 4 C 0.606 3.394 5 O -0.539 6.539 6 C -0.300 4.300 7 C 0.075 3.925 8 N -0.277 5.277 9 N -0.291 5.291 10 S 0.498 5.502 11 C -0.114 4.114 12 C 0.037 3.963 13 N -0.509 5.509 14 C 0.043 3.957 15 C 0.452 3.548 16 O -0.609 6.609 17 N -0.594 5.594 18 C -0.325 4.325 19 H 0.052 0.948 20 C -0.019 4.019 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.256 1.256 24 H -0.279 1.279 25 H -0.228 1.228 26 C 0.032 3.968 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.411 0.589 31 H 0.231 0.769 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.090 0.910 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 15.990 -4.054 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.091 3.909 3 N -0.349 5.349 4 C 0.390 3.610 5 O -0.417 6.417 6 C -0.442 4.442 7 C -0.093 4.093 8 N -0.140 5.140 9 N -0.272 5.272 10 S 0.633 5.367 11 C -0.153 4.153 12 C -0.091 4.091 13 N -0.233 5.233 14 C -0.088 4.088 15 C 0.239 3.761 16 O -0.492 6.492 17 N -0.237 5.237 18 C -0.454 4.454 19 H 0.070 0.930 20 C -0.217 4.217 21 N -0.579 5.579 22 Si 0.786 3.214 23 H -0.181 1.181 24 H -0.204 1.204 25 H -0.152 1.152 26 C -0.095 4.095 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.247 0.753 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.146 0.854 38 H 0.225 0.775 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.412 17.528 -3.854 27.179 hybrid contribution -0.610 -1.850 0.476 2.005 sum -21.022 15.678 -3.378 26.441 Atomic orbital electron populations 1.22167 0.91538 1.03808 1.03558 1.21119 0.94854 0.79852 0.95116 1.45980 1.51686 1.11985 1.25253 1.16510 0.79963 0.82207 0.82360 1.90817 1.37986 1.76483 1.36455 1.28073 1.10735 1.01559 1.03793 1.24755 0.98083 0.85097 1.01353 1.70755 1.08526 1.25411 1.09314 1.78668 1.19963 1.20971 1.07590 1.82397 1.30372 1.00713 1.23260 1.22660 0.99181 0.96154 0.97299 1.23118 0.98086 0.96925 0.90977 1.65042 1.33605 1.22837 1.01816 1.22037 0.92841 0.94077 0.99854 1.20974 0.89590 0.81362 0.84130 1.90551 1.64083 1.61166 1.33438 1.42037 1.17817 1.30201 1.33619 1.18968 0.94882 1.13866 1.17724 0.92960 1.26145 0.97126 0.96887 1.01506 1.69816 1.18719 1.26163 1.43211 0.85346 0.80024 0.78083 0.77926 1.18062 1.20394 1.15154 1.23575 0.91425 0.98292 0.96200 0.90527 0.90013 0.91755 0.75196 0.75319 0.92819 0.89530 0.92652 0.93090 0.89694 0.85369 0.77479 0.91266 0.89183 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.15 71.98 0.59 -1.42 16 2 C 0.18 2.89 1.01 4.50 0.00 2.89 16 3 N -0.70 -10.84 5.09 -422.35 -2.15 -12.99 16 4 C 0.61 11.30 6.98 86.59 0.60 11.90 16 5 O -0.54 -12.96 14.26 -4.09 -0.06 -13.01 16 6 C -0.30 -4.86 6.81 24.62 0.17 -4.69 16 7 C 0.07 1.26 11.55 84.78 0.98 2.24 16 8 N -0.28 -5.67 11.54 -57.86 -0.67 -6.34 16 9 N -0.29 -5.72 12.51 37.02 0.46 -5.25 16 10 S 0.50 6.56 23.05 -56.49 -1.30 5.26 16 11 C -0.11 -2.58 5.54 31.57 0.18 -2.40 16 12 C 0.04 1.02 5.93 86.53 0.51 1.53 16 13 N -0.51 -12.98 4.98 -885.53 -4.41 -17.39 16 14 C 0.04 1.15 5.32 85.56 0.46 1.60 16 15 C 0.45 19.32 7.63 87.66 0.67 19.99 16 16 O -0.61 -32.81 14.80 -3.07 -0.05 -32.85 16 17 N -0.59 -26.88 5.09 -306.99 -1.56 -28.44 16 18 C -0.33 -18.71 10.16 84.04 0.85 -17.86 16 19 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 20 C -0.02 -1.02 5.50 84.92 0.47 -0.55 16 21 N -0.94 -56.26 13.96 21.66 0.30 -55.96 16 22 Si 0.97 37.64 27.74 68.60 1.90 39.54 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 26 C 0.03 0.48 5.65 86.45 0.49 0.97 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.13 6.17 -2.39 -0.01 1.12 16 30 H 0.41 4.72 7.70 -92.71 -0.71 4.01 16 31 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.05 1.46 7.40 -2.39 -0.02 1.45 16 33 H 0.09 1.80 7.71 -2.39 -0.02 1.78 16 34 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 35 H 0.05 1.88 7.23 -2.39 -0.02 1.86 16 36 H 0.09 1.80 7.77 -2.39 -0.02 1.78 16 37 H 0.13 2.53 8.08 -2.39 -0.02 2.51 16 38 H 0.39 14.29 5.76 -92.71 -0.53 13.75 16 39 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.09 0.92 7.72 -2.39 -0.02 0.91 16 41 H 0.11 1.17 7.76 -2.38 -0.02 1.15 16 Total: -1.00 -82.90 355.06 -1.76 -84.66 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.20 Total: 28.57 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.96 Total: 14.21 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -8.02 Total: -126.37 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.10 Total: -45.87 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.90 Total: 39.54 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.30 Total: 5.26 kcal Total: -82.90 -1.76 -84.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.391 kcal (2) G-P(sol) polarization free energy of solvation -82.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds