Wall clock time and date at job start Tue Mar 31 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 110.27343 * 2 1 4 4 C 1.34771 * 119.99855 * 302.08551 * 3 2 1 5 5 O 1.21621 * 120.00052 * 0.02562 * 4 3 2 6 6 C 1.47172 * 120.00115 * 180.02562 * 4 3 2 7 7 C 1.38243 * 128.47990 * 180.02562 * 6 4 3 8 8 N 1.31242 * 111.89084 * 179.97438 * 7 6 4 9 9 N 1.27334 * 120.03886 * 359.97438 * 8 7 6 10 10 S 1.56638 * 109.73886 * 359.69765 * 9 8 7 11 11 C 1.54592 * 110.31173 * 237.80408 * 2 1 3 12 12 C 1.54934 * 102.92538 * 219.12875 * 11 2 1 13 13 N 1.48534 * 103.22627 * 37.41204 * 12 11 2 14 14 C 1.46903 * 110.99950 * 200.28082 * 13 12 11 15 15 C 1.50694 * 109.47066 * 287.39612 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46909 * 90.00283 * 22 20 18 24 24 H 1.48497 * 109.46701 * 210.00192 * 22 20 18 25 25 H 1.48494 * 109.47142 * 330.00117 * 22 20 18 26 26 C 1.47897 * 105.81961 * 320.79405 * 13 12 11 27 27 H 1.09001 * 109.47314 * 297.90976 * 1 2 3 28 28 H 1.08998 * 109.47598 * 57.91351 * 1 2 3 29 29 H 1.08996 * 109.47220 * 177.91298 * 1 2 3 30 30 H 0.96999 * 119.99683 * 122.09285 * 3 2 1 31 31 H 1.08002 * 124.05449 * 359.97438 * 7 6 4 32 32 H 1.09003 * 110.72520 * 337.48628 * 11 2 1 33 33 H 1.08997 * 110.72559 * 100.58567 * 11 2 1 34 34 H 1.09002 * 110.66774 * 278.97766 * 12 11 2 35 35 H 1.09000 * 110.66999 * 155.84946 * 12 11 2 36 36 H 1.08998 * 109.46809 * 167.39713 * 14 13 12 37 37 H 1.09002 * 109.47056 * 47.39454 * 14 13 12 38 38 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 39 39 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.91642 * 144.68166 * 26 13 12 41 41 H 1.09002 * 109.91860 * 265.77683 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.6895 2.2212 -0.9889 5 8 0.9536 1.8447 -1.8810 6 6 2.1998 3.6016 -0.9892 7 6 1.9583 4.6077 -1.9060 8 7 2.5810 5.7186 -1.5887 9 7 3.3007 5.7686 -0.5394 10 16 3.2674 4.3835 0.1914 11 6 2.0665 -0.7725 -1.2269 12 6 3.2854 -1.5354 -0.6500 13 7 2.8312 -1.9229 0.7100 14 6 3.9750 -2.2248 1.5810 15 6 4.5837 -3.5415 1.1725 16 8 4.1108 -4.1672 0.2473 17 7 5.6529 -4.0243 1.8361 18 6 6.2031 -5.2249 1.4681 19 1 5.7801 -5.7836 0.6463 20 6 7.3057 -5.7225 2.1519 21 7 7.8207 -5.0425 3.1515 22 14 8.0559 -7.3580 1.6501 23 1 9.1067 -7.1273 0.6265 24 1 8.6584 -8.0118 2.8394 25 1 6.9989 -8.2349 1.0855 26 6 2.0644 -0.7672 1.2236 27 1 -0.3634 0.4810 0.9081 28 1 -0.3634 0.5459 -0.8706 29 1 -0.3633 -1.0269 -0.0374 30 1 2.6243 1.6745 0.7117 31 1 1.3323 4.4934 -2.7786 32 1 1.3172 -1.4698 -1.6016 33 1 2.3761 -0.0826 -2.0119 34 1 4.1563 -0.8824 -0.5932 35 1 3.5046 -2.4194 -1.2489 36 1 3.6377 -2.2858 2.6156 37 1 4.7209 -1.4353 1.4879 38 1 6.0303 -3.5244 2.5767 39 1 8.5901 -5.3900 3.6290 40 1 1.2326 -1.1159 1.8356 41 1 2.7153 -0.1227 1.8144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500182841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:34 Heat of formation + Delta-G solvation = 21.522530 kcal Electronic energy + Delta-G solvation = -26602.244415 eV Core-core repulsion = 22645.480444 eV Total energy + Delta-G solvation = -3956.763971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34766 -40.66237 -38.87350 -37.65759 -34.86248 -33.85808 -32.87190 -31.61736 -31.18037 -29.76766 -27.93655 -27.62625 -25.47405 -24.15929 -23.52700 -21.77263 -20.89294 -20.22084 -19.50479 -19.18976 -18.01425 -17.85658 -16.45165 -16.35095 -16.16704 -15.70860 -15.35370 -14.91234 -14.85914 -14.68219 -14.42135 -14.04918 -13.62322 -13.45288 -13.24552 -13.14028 -12.66805 -12.52411 -12.46457 -12.18618 -11.87310 -11.53126 -11.41471 -11.32548 -11.09120 -11.06238 -10.85904 -10.74075 -10.57049 -10.41109 -10.34174 -10.29169 -10.23702 -9.53523 -9.47804 -8.55740 -8.07555 -7.97467 -6.44073 -3.84712 -0.76076 0.30727 0.98466 1.50027 2.47075 2.53076 3.16089 3.25022 3.30872 3.53403 3.87116 3.96127 4.09316 4.20601 4.24739 4.38084 4.59426 4.72967 5.06722 5.09779 5.17145 5.22662 5.32779 5.35865 5.47540 5.61192 5.69354 5.73371 5.81701 5.86194 6.06886 6.09419 6.22488 6.24899 6.35221 6.88516 7.03315 7.11243 7.15774 7.53193 7.60107 8.03845 8.59470 9.16215 9.51956 10.03892 10.73773 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002286 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.173344 B =12246.342505 C =13122.653775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 N -0.710 5.710 4 C 0.603 3.397 5 O -0.506 6.506 6 C -0.287 4.287 7 C 0.075 3.925 8 N -0.251 5.251 9 N -0.254 5.254 10 S 0.422 5.578 11 C -0.121 4.121 12 C 0.039 3.961 13 N -0.486 5.486 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.034 3.966 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.397 0.603 31 H 0.217 0.783 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.095 0.905 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 19.137 -2.288 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.079 3.921 3 N -0.363 5.363 4 C 0.386 3.614 5 O -0.382 6.382 6 C -0.428 4.428 7 C -0.092 4.092 8 N -0.115 5.115 9 N -0.235 5.235 10 S 0.556 5.444 11 C -0.160 4.160 12 C -0.088 4.088 13 N -0.210 5.210 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.094 4.094 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.233 0.767 31 H 0.233 0.767 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.964 19.146 -2.426 22.197 hybrid contribution 0.771 -0.240 -0.119 0.816 sum -10.193 18.907 -2.545 21.630 Atomic orbital electron populations 1.22192 0.92654 1.03555 1.03070 1.21308 0.95007 0.79081 0.96658 1.46203 1.50957 1.12523 1.26596 1.16431 0.80629 0.81781 0.82533 1.90841 1.35435 1.76091 1.35824 1.28154 1.09778 1.01927 1.02947 1.24501 0.98481 0.85368 1.00836 1.70713 1.07180 1.24598 1.09038 1.78914 1.18828 1.18606 1.07174 1.82676 1.32437 1.03260 1.25985 1.22888 0.98417 0.98520 0.96183 1.23336 0.95132 0.99696 0.90660 1.64551 1.21069 1.33369 1.02024 1.22094 0.92273 0.97431 0.97798 1.19659 0.83268 0.87758 0.86319 1.90518 1.63249 1.60796 1.31328 1.41858 1.26662 1.20647 1.31090 1.19691 1.10445 0.96626 1.15959 0.87919 1.25252 0.96997 0.99761 0.95944 1.69606 1.24373 1.39199 1.21265 0.85867 0.79184 0.81435 0.77880 1.20442 1.20929 1.19386 1.23244 0.99093 0.91847 0.95253 0.92602 0.90173 0.90601 0.76746 0.76677 0.89347 0.90477 0.94440 0.88018 0.89239 0.93230 0.77562 0.91892 0.88700 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.15 37.15 0.30 -1.19 16 2 C 0.16 1.65 0.94 -130.47 -0.12 1.53 16 3 N -0.71 -5.86 5.15 -47.50 -0.24 -6.11 16 4 C 0.60 5.64 7.00 -12.64 -0.09 5.55 16 5 O -0.51 -6.09 13.86 5.26 0.07 -6.02 16 6 C -0.29 -2.25 6.81 -35.95 -0.25 -2.50 16 7 C 0.08 0.60 11.55 -17.80 -0.21 0.39 16 8 N -0.25 -2.44 11.54 30.36 0.35 -2.09 16 9 N -0.25 -2.40 12.51 60.35 0.75 -1.64 16 10 S 0.42 2.72 23.05 -107.50 -2.48 0.24 16 11 C -0.12 -1.48 5.85 -24.87 -0.15 -1.63 16 12 C 0.04 0.58 5.93 -1.90 -0.01 0.57 16 13 N -0.49 -7.34 4.91 -231.89 -1.14 -8.48 16 14 C 0.04 0.59 5.19 -4.98 -0.03 0.56 16 15 C 0.44 10.10 7.61 -10.98 -0.08 10.02 16 16 O -0.58 -15.11 14.64 5.54 0.08 -15.03 16 17 N -0.57 -13.91 5.29 -10.96 -0.06 -13.96 16 18 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.03 0.37 6.12 -2.76 -0.02 0.35 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.86 6.03 -51.93 -0.31 0.55 16 29 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.40 2.39 7.52 -40.82 -0.31 2.08 16 31 H 0.22 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.09 1.12 7.84 -51.93 -0.41 0.71 16 33 H 0.08 0.96 6.81 -51.93 -0.35 0.60 16 34 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 35 H 0.10 1.83 7.10 -51.93 -0.37 1.46 16 36 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 37 H 0.05 0.73 7.83 -51.93 -0.41 0.32 16 38 H 0.39 9.16 7.90 -40.82 -0.32 8.83 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 41 H 0.05 0.42 7.10 -51.93 -0.37 0.05 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -32.93 356.69 -7.31 -40.25 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.85 Total: 9.27 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.88 Total: 5.85 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.39 Total: -55.70 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.15 Total: -21.05 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.48 Total: 0.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.93 -7.31 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.769 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds