Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 110.27343 * 2 1 4 4 C 1.34771 * 119.99855 * 302.08551 * 3 2 1 5 5 O 1.21621 * 120.00052 * 0.02562 * 4 3 2 6 6 C 1.47172 * 120.00115 * 180.02562 * 4 3 2 7 7 C 1.38243 * 128.47990 * 180.02562 * 6 4 3 8 8 N 1.31242 * 111.89084 * 179.97438 * 7 6 4 9 9 N 1.27334 * 120.03886 * 359.97438 * 8 7 6 10 10 S 1.56638 * 109.73886 * 359.69765 * 9 8 7 11 11 C 1.54592 * 110.31173 * 237.80408 * 2 1 3 12 12 C 1.54934 * 102.92538 * 219.12875 * 11 2 1 13 13 N 1.48534 * 103.22627 * 37.41204 * 12 11 2 14 14 C 1.46903 * 110.99950 * 200.28082 * 13 12 11 15 15 C 1.50694 * 109.47066 * 287.39612 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46909 * 90.00283 * 22 20 18 24 24 H 1.48497 * 109.46701 * 210.00192 * 22 20 18 25 25 H 1.48494 * 109.47142 * 330.00117 * 22 20 18 26 26 C 1.47897 * 105.81961 * 320.79405 * 13 12 11 27 27 H 1.09001 * 109.47314 * 297.90976 * 1 2 3 28 28 H 1.08998 * 109.47598 * 57.91351 * 1 2 3 29 29 H 1.08996 * 109.47220 * 177.91298 * 1 2 3 30 30 H 0.96999 * 119.99683 * 122.09285 * 3 2 1 31 31 H 1.08002 * 124.05449 * 359.97438 * 7 6 4 32 32 H 1.09003 * 110.72520 * 337.48628 * 11 2 1 33 33 H 1.08997 * 110.72559 * 100.58567 * 11 2 1 34 34 H 1.09002 * 110.66774 * 278.97766 * 12 11 2 35 35 H 1.09000 * 110.66999 * 155.84946 * 12 11 2 36 36 H 1.08998 * 109.46809 * 167.39713 * 14 13 12 37 37 H 1.09002 * 109.47056 * 47.39454 * 14 13 12 38 38 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 39 39 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 40 40 H 1.09006 * 109.91642 * 144.68166 * 26 13 12 41 41 H 1.09002 * 109.91860 * 265.77683 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.6895 2.2212 -0.9889 5 8 0.9536 1.8447 -1.8810 6 6 2.1998 3.6016 -0.9892 7 6 1.9583 4.6077 -1.9060 8 7 2.5810 5.7186 -1.5887 9 7 3.3007 5.7686 -0.5394 10 16 3.2674 4.3835 0.1914 11 6 2.0665 -0.7725 -1.2269 12 6 3.2854 -1.5354 -0.6500 13 7 2.8312 -1.9229 0.7100 14 6 3.9750 -2.2248 1.5810 15 6 4.5837 -3.5415 1.1725 16 8 4.1108 -4.1672 0.2473 17 7 5.6529 -4.0243 1.8361 18 6 6.2031 -5.2249 1.4681 19 1 5.7801 -5.7836 0.6463 20 6 7.3057 -5.7225 2.1519 21 7 7.8207 -5.0425 3.1515 22 14 8.0559 -7.3580 1.6501 23 1 9.1067 -7.1273 0.6265 24 1 8.6584 -8.0118 2.8394 25 1 6.9989 -8.2349 1.0855 26 6 2.0644 -0.7672 1.2236 27 1 -0.3634 0.4810 0.9081 28 1 -0.3634 0.5459 -0.8706 29 1 -0.3633 -1.0269 -0.0374 30 1 2.6243 1.6745 0.7117 31 1 1.3323 4.4934 -2.7786 32 1 1.3172 -1.4698 -1.6016 33 1 2.3761 -0.0826 -2.0119 34 1 4.1563 -0.8824 -0.5932 35 1 3.5046 -2.4194 -1.2489 36 1 3.6377 -2.2858 2.6156 37 1 4.7209 -1.4353 1.4879 38 1 6.0303 -3.5244 2.5767 39 1 8.5901 -5.3900 3.6290 40 1 1.2326 -1.1159 1.8356 41 1 2.7153 -0.1227 1.8144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500182841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = -5.385130 kcal Electronic energy + Delta-G solvation = -26603.411218 eV Core-core repulsion = 22645.480444 eV Total energy + Delta-G solvation = -3957.930775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01695 -41.48678 -40.23006 -39.03236 -36.09631 -35.55104 -33.63995 -33.23588 -32.36908 -30.77299 -28.91465 -28.56247 -26.88774 -25.51529 -24.34098 -22.81330 -21.70778 -21.08045 -20.87400 -20.10809 -19.84523 -18.70601 -17.82329 -17.24366 -17.02318 -16.68039 -16.47509 -16.22037 -16.05192 -15.79226 -15.62455 -15.47497 -14.89292 -14.68035 -14.19497 -14.13095 -13.81807 -13.63931 -13.41545 -13.27183 -12.99524 -12.94628 -12.90345 -12.42437 -12.38711 -12.37379 -12.11520 -12.00894 -11.92992 -11.46271 -11.36804 -11.18751 -11.08139 -10.92300 -10.30233 -10.25243 -9.97613 -9.31066 -8.44772 -5.92452 -1.37690 -0.25929 0.39863 0.86557 1.38526 1.42503 1.54613 1.74922 1.83426 2.10041 2.30006 2.83512 2.94975 3.22404 3.28472 3.48374 3.58430 3.66545 3.70015 3.91532 4.24064 4.30082 4.31798 4.45724 4.52875 4.56954 4.58807 4.73045 4.83218 4.87264 4.95814 5.09262 5.13745 5.34430 5.38740 5.43376 5.84219 5.95612 6.10577 6.25944 6.55069 6.64244 6.91751 7.16535 7.60741 8.17443 8.72671 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002286 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.173344 B =12246.342505 C =13122.653775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.173 3.827 3 N -0.701 5.701 4 C 0.607 3.393 5 O -0.536 6.536 6 C -0.301 4.301 7 C 0.076 3.924 8 N -0.277 5.277 9 N -0.290 5.290 10 S 0.501 5.499 11 C -0.114 4.114 12 C 0.042 3.958 13 N -0.510 5.510 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.617 6.617 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.274 1.274 26 C 0.037 3.963 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.411 0.589 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.108 0.892 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 20.335 -0.658 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.088 3.912 3 N -0.354 5.354 4 C 0.391 3.609 5 O -0.414 6.414 6 C -0.442 4.442 7 C -0.091 4.091 8 N -0.140 5.140 9 N -0.271 5.271 10 S 0.636 5.364 11 C -0.153 4.153 12 C -0.086 4.086 13 N -0.235 5.235 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.214 5.214 18 C -0.459 4.459 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.813 3.187 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.090 4.090 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.249 0.751 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.927 20.393 -0.760 23.148 hybrid contribution 0.746 -0.617 -0.611 1.145 sum -10.181 19.776 -1.371 22.285 Atomic orbital electron populations 1.22136 0.92014 1.03373 1.03460 1.21114 0.95369 0.79581 0.95175 1.46036 1.50923 1.11625 1.26810 1.16520 0.80063 0.82174 0.82109 1.90838 1.36808 1.76763 1.36964 1.28028 1.10797 1.01300 1.04069 1.24758 0.98156 0.84996 1.01230 1.70768 1.08055 1.25551 1.09639 1.78679 1.19693 1.20871 1.07856 1.82310 1.29837 1.00824 1.23475 1.22775 0.97150 0.98273 0.97123 1.23169 0.96549 0.98227 0.90624 1.64438 1.20785 1.36333 1.01936 1.21968 0.93233 0.94012 0.99066 1.20844 0.82053 0.89382 0.84869 1.90498 1.64155 1.62636 1.32971 1.41924 1.27526 1.20254 1.31703 1.19611 1.11781 0.98215 1.16324 0.90561 1.25965 0.96827 1.02684 0.95728 1.69657 1.24631 1.40312 1.21566 0.84989 0.78191 0.77580 0.77976 1.19779 1.19559 1.19926 1.23308 0.99392 0.90830 0.95518 0.90627 0.91474 0.90976 0.75116 0.75396 0.90393 0.90741 0.93668 0.92305 0.86560 0.90654 0.76966 0.91376 0.87362 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.15 71.98 0.59 -1.98 16 2 C 0.17 3.08 0.94 4.48 0.00 3.08 16 3 N -0.70 -9.55 5.15 -422.43 -2.17 -11.72 16 4 C 0.61 10.17 7.00 86.59 0.61 10.77 16 5 O -0.54 -12.35 13.86 -4.10 -0.06 -12.40 16 6 C -0.30 -4.14 6.81 24.62 0.17 -3.97 16 7 C 0.08 1.13 11.55 84.78 0.98 2.11 16 8 N -0.28 -5.13 11.54 -57.87 -0.67 -5.79 16 9 N -0.29 -5.03 12.51 37.02 0.46 -4.57 16 10 S 0.50 5.15 23.05 -56.49 -1.30 3.85 16 11 C -0.11 -2.73 5.85 31.80 0.19 -2.55 16 12 C 0.04 1.24 5.93 86.65 0.51 1.75 16 13 N -0.51 -14.57 4.91 -887.57 -4.35 -18.92 16 14 C 0.05 1.49 5.19 85.55 0.44 1.93 16 15 C 0.44 20.11 7.61 87.65 0.67 20.78 16 16 O -0.62 -33.42 14.64 -3.08 -0.05 -33.46 16 17 N -0.58 -28.56 5.29 -306.97 -1.62 -30.19 16 18 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 21 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.04 0.66 6.12 86.45 0.53 1.19 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.36 6.03 -2.39 -0.01 1.35 16 29 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.41 3.30 7.52 -92.71 -0.70 2.60 16 31 H 0.23 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.08 2.01 7.84 -2.39 -0.02 1.99 16 33 H 0.07 1.82 6.81 -2.39 -0.02 1.80 16 34 H 0.05 1.23 7.81 -2.39 -0.02 1.21 16 35 H 0.06 2.23 7.10 -2.39 -0.02 2.21 16 36 H 0.12 2.99 8.08 -2.39 -0.02 2.97 16 37 H 0.08 1.96 7.83 -2.39 -0.02 1.94 16 38 H 0.40 18.45 7.90 -92.71 -0.73 17.72 16 39 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.11 1.73 7.68 -2.38 -0.02 1.71 16 41 H 0.08 0.97 7.10 -2.39 -0.02 0.95 16 Total: -1.00 -73.46 356.69 -1.81 -75.27 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.32 Total: 26.45 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.96 Total: 15.35 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -8.07 Total: -119.57 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.10 Total: -45.86 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.30 Total: 3.85 kcal Total: -73.46 -1.81 -75.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds