Wall clock time and date at job start Tue Mar 31 2020 22:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47064 * 269.99902 * 3 2 1 5 5 H 1.48499 * 109.47165 * 30.00316 * 3 2 1 6 6 H 1.48502 * 109.46680 * 150.00432 * 3 2 1 7 7 C 1.38950 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00256 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99689 * 179.97438 * 7 2 1 10 10 C 1.34772 * 120.00345 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99400 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00421 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46970 * 179.97438 * 12 10 9 14 14 C 1.47972 * 110.99876 * 170.00155 * 13 12 10 15 15 C 1.53935 * 86.18214 * 222.42042 * 14 13 12 16 16 O 1.42894 * 113.73226 * 269.25884 * 15 14 13 17 17 C 1.52996 * 113.73370 * 138.07783 * 15 14 13 18 18 N 1.46498 * 109.47059 * 184.99789 * 17 15 14 19 19 C 1.34777 * 119.99828 * 179.72339 * 18 17 15 20 20 O 1.21283 * 120.00222 * 0.28168 * 19 18 17 21 21 C 1.50703 * 120.00290 * 180.27728 * 19 18 17 22 22 C 1.52990 * 109.47398 * 180.02562 * 21 19 18 23 23 F 1.39907 * 109.46934 * 60.00211 * 22 21 19 24 24 F 1.39899 * 109.47246 * 179.97438 * 22 21 19 25 25 F 1.39896 * 109.47544 * 300.00442 * 22 21 19 26 26 C 1.47965 * 111.00100 * 70.64608 * 13 12 10 27 27 H 0.97002 * 120.00132 * 359.97438 * 1 2 3 28 28 H 0.97010 * 119.99999 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46932 * 60.00651 * 12 10 9 30 30 H 1.08997 * 109.47149 * 300.00299 * 12 10 9 31 31 H 1.09001 * 113.75645 * 108.10148 * 14 13 12 32 32 H 1.09000 * 113.75871 * 336.73930 * 14 13 12 33 33 H 0.96702 * 114.00177 * 178.09891 * 16 15 14 34 34 H 1.09004 * 109.47066 * 65.00057 * 17 15 14 35 35 H 1.08994 * 109.46974 * 305.00204 * 17 15 14 36 36 H 0.97001 * 120.00384 * 0.02562 * 18 17 15 37 37 H 1.08998 * 109.46954 * 300.00581 * 21 19 18 38 38 H 1.09002 * 109.46946 * 59.99717 * 21 19 18 39 39 H 1.09004 * 113.75659 * 23.26332 * 26 13 12 40 40 H 1.08996 * 113.76175 * 251.89901 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5608 -2.3705 -0.0022 13 7 6.0504 -3.7554 -0.0014 14 6 7.5096 -3.8021 -0.2423 15 6 7.2137 -4.9911 -1.1742 16 8 7.2595 -6.2603 -0.5194 17 6 8.0119 -4.9642 -2.4792 18 7 7.5742 -6.0641 -3.3421 19 6 8.1382 -6.2350 -4.5543 20 8 9.0116 -5.4814 -4.9285 21 6 7.6836 -7.3627 -5.4446 22 6 8.4783 -7.3328 -6.7516 23 9 9.8413 -7.4798 -6.4720 24 9 8.0567 -8.3800 -7.5779 25 9 8.2644 -6.1117 -7.3997 26 6 5.7945 -4.4092 -1.3039 27 1 -0.4850 0.8401 0.0004 28 1 3.8649 -0.3632 -0.0007 29 1 5.9248 -1.8563 0.8873 30 1 5.9234 -1.8570 -0.8927 31 1 8.0919 -4.0696 0.6395 32 1 7.8976 -2.9247 -0.7596 33 1 7.0458 -7.0077 -1.0946 34 1 9.0735 -5.0761 -2.2582 35 1 7.8449 -4.0147 -2.9877 36 1 6.8754 -6.6667 -3.0430 37 1 7.8507 -8.3142 -4.9398 38 1 6.6216 -7.2485 -5.6620 39 1 5.6809 -3.7092 -2.1317 40 1 5.0066 -5.1615 -1.2704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500798459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:12 Heat of formation + Delta-G solvation = -258.107589 kcal Electronic energy + Delta-G solvation = -29360.318622 eV Core-core repulsion = 24374.526616 eV Total energy + Delta-G solvation = -4985.792005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.07605 -48.60156 -48.54899 -41.84023 -40.70752 -39.82450 -36.98168 -35.94403 -35.43817 -33.77269 -33.06039 -31.50750 -28.79366 -27.24921 -26.72352 -25.06527 -23.62147 -21.89580 -21.27236 -20.98929 -20.26969 -19.83768 -19.55236 -18.91291 -18.13034 -17.83434 -17.41887 -16.98971 -16.89012 -16.70155 -16.54021 -16.13795 -15.64181 -15.48579 -15.36858 -15.23918 -14.97753 -14.91735 -14.72786 -14.68910 -14.60685 -14.50974 -14.36450 -14.11409 -13.63002 -13.57713 -13.24334 -13.01581 -12.99239 -12.92560 -12.47193 -12.42417 -11.99170 -11.84231 -11.51708 -11.25789 -10.95515 -10.43296 -10.32157 -10.25918 -9.68180 -8.42408 -6.03307 1.29561 1.34359 1.37307 1.43642 1.49679 1.94031 2.01027 2.21899 2.60129 2.72938 2.84893 3.06086 3.06787 3.13899 3.21298 3.27034 3.58004 3.72934 3.98514 4.11608 4.16873 4.27744 4.28102 4.38202 4.44427 4.52508 4.63144 4.69586 4.79860 4.98730 5.14836 5.38006 5.52122 5.87703 5.98115 6.23064 6.58080 6.70958 6.86934 6.98032 7.38272 7.94949 8.75141 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.002198 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.357478 B =12738.572364 C =13564.414129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.327 4.327 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.609 6.609 12 C 0.015 3.985 13 N -0.478 5.478 14 C 0.021 3.979 15 C 0.113 3.887 16 O -0.535 6.535 17 C 0.110 3.890 18 N -0.710 5.710 19 C 0.518 3.482 20 O -0.567 6.567 21 C -0.186 4.186 22 C 0.464 3.536 23 F -0.189 7.189 24 F -0.180 7.180 25 F -0.192 7.192 26 C -0.009 4.009 27 H 0.279 0.721 28 H 0.389 0.611 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.389 0.611 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.418 0.582 37 H 0.180 0.820 38 H 0.172 0.828 39 H 0.078 0.922 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.851 -12.467 -10.167 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.456 4.456 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.239 3.761 11 O -0.493 6.493 12 C -0.116 4.116 13 N -0.201 5.201 14 C -0.107 4.107 15 C 0.070 3.930 16 O -0.343 6.343 17 C -0.015 4.015 18 N -0.364 5.364 19 C 0.304 3.696 20 O -0.445 6.445 21 C -0.225 4.225 22 C 0.409 3.591 23 F -0.171 7.171 24 F -0.162 7.162 25 F -0.173 7.173 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.225 0.775 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.240 0.760 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.256 0.744 37 H 0.198 0.802 38 H 0.190 0.810 39 H 0.096 0.904 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.762 -12.424 -9.316 26.734 hybrid contribution -0.592 0.863 -1.157 1.561 sum 21.170 -11.561 -10.473 26.297 Atomic orbital electron populations 1.69803 1.08128 1.29242 1.50320 1.26112 0.96465 1.02701 0.96108 0.85380 0.79520 0.76785 0.79944 1.18096 1.20114 1.15456 1.18985 0.81465 0.94877 1.50314 0.92659 1.42062 1.05848 1.07609 1.67914 1.20836 0.90716 0.83358 0.81230 1.90541 1.71276 1.32659 1.54775 1.22512 0.90714 0.93408 1.04966 1.68461 1.07019 1.12956 1.31708 1.24266 0.90300 0.96131 0.99996 1.22715 0.93061 0.86107 0.91102 1.86626 1.92210 1.14956 1.40465 1.21933 0.99681 0.91096 0.88756 1.45611 1.41409 1.32834 1.16523 1.20262 0.81612 0.85441 0.82322 1.90841 1.32359 1.47264 1.74054 1.23063 1.04977 1.03482 0.91024 1.20214 0.78536 0.73140 0.87201 1.93198 1.34880 1.95342 1.93631 1.93212 1.89769 1.58144 1.75051 1.93199 1.94559 1.45661 1.83900 1.24560 0.98201 0.99472 0.91563 0.91151 0.77520 0.86355 0.89004 0.87577 0.86900 0.76022 0.89593 0.90049 0.74418 0.80249 0.81008 0.90438 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.96 21.66 0.30 -55.62 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.96 38.24 27.74 68.60 1.90 40.14 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.23 -7.69 6.52 99.48 0.65 -7.05 16 7 C -0.33 -18.94 10.16 84.04 0.85 -18.09 16 8 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.43 5.09 -306.99 -1.56 -28.99 16 10 C 0.45 19.86 7.59 87.66 0.67 20.52 16 11 O -0.61 -32.96 15.12 -3.07 -0.05 -33.01 16 12 C 0.02 0.45 5.30 85.56 0.45 0.90 16 13 N -0.48 -13.47 5.95 -915.11 -5.44 -18.91 16 14 C 0.02 0.39 7.38 86.40 0.64 1.03 16 15 C 0.11 1.89 1.52 -10.15 -0.02 1.88 16 16 O -0.54 -9.30 13.50 -148.98 -2.01 -11.31 16 17 C 0.11 1.46 5.28 86.38 0.46 1.92 16 18 N -0.71 -6.87 5.34 -463.07 -2.47 -9.34 16 19 C 0.52 7.08 7.60 87.66 0.67 7.75 16 20 O -0.57 -13.50 14.83 -3.04 -0.05 -13.54 16 21 C -0.19 -1.15 5.75 29.85 0.17 -0.98 16 22 C 0.46 6.80 2.89 71.98 0.21 7.01 16 23 F -0.19 -3.64 16.40 44.97 0.74 -2.90 16 24 F -0.18 -2.47 17.32 44.97 0.78 -1.69 16 25 F -0.19 -3.94 16.40 44.97 0.74 -3.21 16 26 C -0.01 -0.22 6.16 86.41 0.53 0.32 16 27 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.39 14.84 5.76 -92.70 -0.53 14.30 16 29 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 30 H 0.09 2.04 7.69 -2.39 -0.02 2.02 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 1.40 7.75 -2.39 -0.02 1.38 16 33 H 0.39 3.28 7.61 -74.06 -0.56 2.72 16 34 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 36 H 0.42 1.51 7.31 -92.71 -0.68 0.84 16 37 H 0.18 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.08 1.85 7.67 -2.38 -0.02 1.83 16 40 H 0.07 2.22 8.09 -2.39 -0.02 2.20 16 Total: -1.00 -89.56 353.83 -2.72 -92.28 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.70 Total: 24.23 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 5.10 Total: 21.88 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -9.17 Total: -112.86 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.10 Total: -57.86 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 2.25 Total: -7.80 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -89.56 -2.72 -92.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500798459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.827 kcal (2) G-P(sol) polarization free energy of solvation -89.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds