Wall clock time and date at job start Tue Mar 31 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48495 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47130 * 300.00229 * 3 2 1 6 6 H 1.48508 * 109.47046 * 60.00126 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99814 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99765 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46947 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00385 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99792 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00012 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47276 * 180.02562 * 14 13 11 16 16 C 1.30998 * 120.00210 * 127.01105 * 15 14 13 17 17 C 1.50700 * 119.99844 * 7.55688 * 16 15 14 18 18 N 1.46500 * 109.47037 * 127.15553 * 17 16 15 19 19 C 1.34775 * 120.00071 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00066 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99945 * 180.02562 * 19 18 17 22 22 N 1.46499 * 109.47120 * 179.97438 * 21 19 18 23 23 N 1.28603 * 124.61946 * 89.99953 * 22 21 19 24 24 C 1.31383 * 108.72070 * 179.97438 * 23 22 21 25 25 C 1.39671 * 105.89899 * 359.97438 * 24 23 22 26 26 N 1.28605 * 124.61999 * 269.97907 * 22 21 19 27 27 H 0.96991 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47258 * 60.00006 * 10 9 7 29 29 H 1.09002 * 109.46628 * 299.99488 * 10 9 7 30 30 H 0.96997 * 120.00269 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47208 * 60.00973 * 14 13 11 32 32 H 1.08995 * 109.47626 * 300.00926 * 14 13 11 33 33 H 1.08005 * 119.99898 * 307.00893 * 15 14 13 34 34 H 1.07994 * 119.99879 * 187.56223 * 16 15 14 35 35 H 1.09001 * 109.47240 * 7.16112 * 17 16 15 36 36 H 1.08998 * 109.47483 * 247.16273 * 17 16 15 37 37 H 0.97001 * 120.00221 * 0.02562 * 18 17 16 38 38 H 1.09004 * 109.47213 * 60.00556 * 21 19 18 39 39 H 1.09002 * 109.47256 * 299.99926 * 21 19 18 40 40 H 1.08000 * 127.04799 * 180.02562 * 24 23 22 41 41 H 1.08000 * 127.05024 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8914 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8443 -6.3431 0.0039 14 6 2.3306 -7.7150 0.0050 15 6 3.4851 -8.6837 0.0058 16 6 3.5479 -9.6271 0.9125 17 6 2.3874 -9.8525 1.8470 18 7 1.9924 -11.2626 1.8038 19 6 0.9689 -11.6993 2.5642 20 8 0.3746 -10.9249 3.2840 21 6 0.5629 -13.1500 2.5201 22 7 -0.5645 -13.3694 3.4294 23 7 -1.8024 -13.2658 3.0967 24 6 -2.5452 -13.5280 4.1482 25 6 -1.6535 -13.8100 5.1857 26 7 -0.4512 -13.6921 4.6692 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7305 0.8927 29 1 3.1245 -3.7321 -0.8873 30 1 3.8011 -6.1835 0.0041 31 1 1.7217 -7.8758 -0.8846 32 1 1.7223 -7.8745 0.8953 33 1 4.2606 -8.6001 -0.7413 34 1 4.4315 -10.2433 0.9902 35 1 1.5470 -9.2303 1.5394 36 1 2.6822 -9.5887 2.8627 37 1 2.4679 -11.8821 1.2284 38 1 1.4035 -13.7720 2.8277 39 1 0.2678 -13.4140 1.5046 40 1 -3.6239 -13.5266 4.1996 41 1 -1.9015 -14.0710 6.2039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501697441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:22 Heat of formation + Delta-G solvation = 69.501991 kcal Electronic energy + Delta-G solvation = -24649.788503 eV Core-core repulsion = 20695.105078 eV Total energy + Delta-G solvation = -3954.683426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.84850 -40.22265 -39.24999 -37.03136 -34.85970 -34.18679 -32.95566 -32.71060 -32.42669 -29.79470 -29.07026 -26.77746 -25.56926 -25.09258 -23.19737 -22.51246 -21.08216 -20.48581 -19.60948 -18.19444 -17.99293 -17.63932 -17.03649 -16.34776 -16.27037 -16.12077 -15.58045 -15.50440 -15.13903 -14.80761 -14.76530 -14.61615 -14.14116 -13.91602 -13.81732 -13.46596 -13.09879 -12.92463 -12.60005 -12.51643 -11.94667 -11.85751 -11.29053 -11.10401 -11.06978 -11.02062 -10.79720 -10.76045 -10.61296 -10.06745 -9.80954 -9.64764 -9.58098 -9.36460 -9.07645 -8.85492 -8.23126 -6.50082 -6.21622 -3.92318 1.23649 1.51268 1.79887 1.98458 2.21726 2.76675 3.06812 3.08468 3.21678 3.29000 3.34430 3.76720 3.77403 4.01099 4.20071 4.22163 4.29534 4.43648 4.46777 4.73887 4.78764 5.05909 5.10269 5.13522 5.14600 5.34419 5.44288 5.49919 5.66353 5.70680 5.79913 5.87406 5.87801 6.00714 6.12492 6.19625 6.25921 6.55496 6.84169 7.58154 7.59812 7.65969 8.00178 8.35428 8.57660 9.23692 10.85885 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.001614 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.303233 B =17347.146754 C =18488.613059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.515 6.515 13 N -0.735 5.735 14 C 0.133 3.867 15 C -0.137 4.137 16 C -0.166 4.166 17 C 0.134 3.866 18 N -0.719 5.719 19 C 0.498 3.502 20 O -0.512 6.512 21 C 0.125 3.875 22 N -0.148 5.148 23 N -0.280 5.280 24 C -0.022 4.022 25 C -0.022 4.022 26 N -0.283 5.283 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.404 0.596 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.199 0.801 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -32.052 3.514 33.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.390 5.390 14 C 0.009 3.991 15 C -0.156 4.156 16 C -0.185 4.185 17 C 0.012 3.988 18 N -0.373 5.373 19 C 0.281 3.719 20 O -0.386 6.386 21 C 0.000 4.000 22 N -0.048 5.048 23 N -0.121 5.121 24 C -0.205 4.205 25 C -0.206 4.206 26 N -0.124 5.124 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.238 0.762 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.216 0.784 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.981 -31.486 3.182 32.207 hybrid contribution 2.030 0.949 0.307 2.262 sum 8.011 -30.538 3.488 31.763 Atomic orbital electron populations 1.70029 1.05955 1.27370 1.46889 1.25003 0.95032 0.99056 0.94540 0.86108 0.79555 0.81864 0.77906 1.19627 1.20560 1.20559 1.22908 0.94946 0.91633 1.58893 0.90852 1.85439 1.04866 0.96351 1.96713 1.23527 1.06623 0.95208 1.04977 1.20358 0.86515 0.86283 0.75133 1.90720 1.15365 1.85530 1.47299 1.45932 1.10053 1.04871 1.78188 1.20499 0.94651 0.80626 1.03310 1.23063 0.99155 0.96165 0.97260 1.22811 0.98443 1.01008 0.96260 1.20629 0.96648 0.81431 1.00096 1.45763 1.34572 1.11300 1.45620 1.20510 0.80731 0.89881 0.80786 1.90858 1.52525 1.56288 1.38909 1.21634 0.87430 0.96087 0.94802 1.47279 1.04189 1.47366 1.05950 1.74075 0.91167 1.18340 1.28478 1.24833 1.01840 1.04652 0.89176 1.24813 0.87791 1.05801 1.02168 1.74037 1.26628 1.16952 0.94754 0.92215 0.89149 0.89157 0.76687 0.90559 0.90273 0.85671 0.85783 0.89318 0.90207 0.76169 0.84417 0.84330 0.78374 0.78416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.92 7.85 -10.99 -0.09 9.83 16 12 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 13 N -0.74 -9.47 5.55 -61.47 -0.34 -9.82 16 14 C 0.13 1.45 5.76 -5.19 -0.03 1.42 16 15 C -0.14 -0.92 9.63 -36.02 -0.35 -1.26 16 16 C -0.17 -0.91 9.63 -36.03 -0.35 -1.26 16 17 C 0.13 1.06 5.76 -5.19 -0.03 1.03 16 18 N -0.72 -4.22 5.55 -61.47 -0.34 -4.56 16 19 C 0.50 4.48 7.90 -10.99 -0.09 4.39 16 20 O -0.51 -7.65 16.43 5.55 0.09 -7.56 16 21 C 0.13 0.73 7.02 -5.19 -0.04 0.70 16 22 N -0.15 -1.50 3.44 -11.66 -0.04 -1.54 16 23 N -0.28 -3.11 12.05 30.67 0.37 -2.74 16 24 C -0.02 -0.19 12.20 -17.21 -0.21 -0.40 16 25 C -0.02 -0.19 12.20 -17.21 -0.21 -0.40 16 26 N -0.28 -3.02 12.05 30.67 0.37 -2.65 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 30 H 0.40 3.86 8.46 -40.82 -0.35 3.52 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.99 5.29 -51.93 -0.27 0.71 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.12 0.40 8.06 -52.49 -0.42 -0.02 16 35 H 0.09 0.92 5.30 -51.93 -0.28 0.65 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 0.76 8.46 -40.82 -0.35 0.41 16 38 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.20 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -42.64 379.39 -6.56 -49.21 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.01 Total: 0.61 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.96 Total: -1.85 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.75 Total: -46.94 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.18 Total: -19.37 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -42.64 -6.56 -49.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.711 kcal (2) G-P(sol) polarization free energy of solvation -42.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds