Wall clock time and date at job start Tue Mar 31 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99854 * 2 1 4 4 H 1.48495 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47130 * 300.00229 * 3 2 1 6 6 H 1.48508 * 109.47046 * 60.00126 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99814 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99765 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46947 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00385 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99792 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00012 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47276 * 180.02562 * 14 13 11 16 16 C 1.30998 * 120.00210 * 127.01105 * 15 14 13 17 17 C 1.50700 * 119.99844 * 7.55688 * 16 15 14 18 18 N 1.46500 * 109.47037 * 127.15553 * 17 16 15 19 19 C 1.34775 * 120.00071 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00066 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99945 * 180.02562 * 19 18 17 22 22 N 1.46499 * 109.47120 * 179.97438 * 21 19 18 23 23 N 1.28603 * 124.61946 * 89.99953 * 22 21 19 24 24 C 1.31383 * 108.72070 * 179.97438 * 23 22 21 25 25 C 1.39671 * 105.89899 * 359.97438 * 24 23 22 26 26 N 1.28605 * 124.61999 * 269.97907 * 22 21 19 27 27 H 0.96991 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47258 * 60.00006 * 10 9 7 29 29 H 1.09002 * 109.46628 * 299.99488 * 10 9 7 30 30 H 0.96997 * 120.00269 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47208 * 60.00973 * 14 13 11 32 32 H 1.08995 * 109.47626 * 300.00926 * 14 13 11 33 33 H 1.08005 * 119.99898 * 307.00893 * 15 14 13 34 34 H 1.07994 * 119.99879 * 187.56223 * 16 15 14 35 35 H 1.09001 * 109.47240 * 7.16112 * 17 16 15 36 36 H 1.08998 * 109.47483 * 247.16273 * 17 16 15 37 37 H 0.97001 * 120.00221 * 0.02562 * 18 17 16 38 38 H 1.09004 * 109.47213 * 60.00556 * 21 19 18 39 39 H 1.09002 * 109.47256 * 299.99926 * 21 19 18 40 40 H 1.08000 * 127.04799 * 180.02562 * 24 23 22 41 41 H 1.08000 * 127.05024 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8914 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8443 -6.3431 0.0039 14 6 2.3306 -7.7150 0.0050 15 6 3.4851 -8.6837 0.0058 16 6 3.5479 -9.6271 0.9125 17 6 2.3874 -9.8525 1.8470 18 7 1.9924 -11.2626 1.8038 19 6 0.9689 -11.6993 2.5642 20 8 0.3746 -10.9249 3.2840 21 6 0.5629 -13.1500 2.5201 22 7 -0.5645 -13.3694 3.4294 23 7 -1.8024 -13.2658 3.0967 24 6 -2.5452 -13.5280 4.1482 25 6 -1.6535 -13.8100 5.1857 26 7 -0.4512 -13.6921 4.6692 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7305 0.8927 29 1 3.1245 -3.7321 -0.8873 30 1 3.8011 -6.1835 0.0041 31 1 1.7217 -7.8758 -0.8846 32 1 1.7223 -7.8745 0.8953 33 1 4.2606 -8.6001 -0.7413 34 1 4.4315 -10.2433 0.9902 35 1 1.5470 -9.2303 1.5394 36 1 2.6822 -9.5887 2.8627 37 1 2.4679 -11.8821 1.2284 38 1 1.4035 -13.7720 2.8277 39 1 0.2678 -13.4140 1.5046 40 1 -3.6239 -13.5266 4.1996 41 1 -1.9015 -14.0710 6.2039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501697441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:22 Heat of formation + Delta-G solvation = 33.348768 kcal Electronic energy + Delta-G solvation = -24651.356225 eV Core-core repulsion = 20695.105078 eV Total energy + Delta-G solvation = -3956.251147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.49159 -40.97507 -40.62699 -37.85492 -35.84724 -34.82051 -34.59894 -33.88852 -33.39960 -31.15095 -29.81166 -27.83819 -27.42799 -26.00478 -23.83375 -23.18797 -21.90887 -21.71874 -20.40828 -19.73397 -18.70051 -18.62469 -17.89816 -17.66863 -17.02529 -16.92420 -16.89046 -16.67855 -16.42115 -16.05701 -15.74105 -15.53594 -15.22535 -14.91874 -14.72898 -14.54317 -14.40332 -14.19725 -13.65363 -13.35933 -13.18131 -13.16021 -12.91985 -12.60456 -12.59714 -11.98742 -11.81607 -11.71849 -11.57317 -11.33827 -11.17202 -11.11789 -10.56531 -10.38328 -10.28765 -10.26425 -9.87943 -8.69126 -8.36022 -6.14756 0.62598 0.87773 1.26229 1.30619 1.32223 1.40933 1.48085 1.56917 1.58843 1.59504 2.17592 2.25918 2.43133 2.98268 3.29526 3.31449 3.51703 3.60429 3.90379 3.97791 4.00670 4.00986 4.07080 4.16444 4.27547 4.36562 4.48832 4.57419 4.61652 4.66535 4.91634 5.04001 5.16082 5.32355 5.32884 5.40865 5.45189 5.65559 5.69178 6.18826 6.33287 6.48166 7.02412 7.05179 7.21333 7.33988 8.73607 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.001614 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.303233 B =17347.146754 C =18488.613059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.128 4.128 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.707 5.707 14 C 0.128 3.872 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.129 3.871 18 N -0.696 5.696 19 C 0.495 3.505 20 O -0.582 6.582 21 C 0.121 3.879 22 N -0.158 5.158 23 N -0.314 5.314 24 C -0.028 4.028 25 C -0.026 4.026 26 N -0.310 5.310 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.420 0.580 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.427 0.573 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.228 0.772 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 -33.628 3.057 35.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.279 4.279 11 C 0.316 3.684 12 O -0.448 6.448 13 N -0.361 5.361 14 C 0.005 3.995 15 C -0.159 4.159 16 C -0.157 4.157 17 C 0.006 3.994 18 N -0.351 5.351 19 C 0.280 3.720 20 O -0.461 6.461 21 C -0.002 4.002 22 N -0.058 5.058 23 N -0.155 5.155 24 C -0.211 4.211 25 C -0.209 4.209 26 N -0.151 5.151 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.257 0.743 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.266 0.734 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.244 0.756 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.557 -33.133 2.677 34.588 hybrid contribution 0.969 1.280 0.486 1.677 sum 10.526 -31.853 3.163 33.696 Atomic orbital electron populations 1.70200 1.08062 1.28573 1.48079 1.26174 0.95981 1.03455 0.93718 0.84870 0.78638 0.76150 0.78052 1.17847 1.19868 1.20037 1.23244 0.95400 0.91846 1.58785 0.89704 1.85659 1.10823 0.99513 1.97067 1.23364 1.03472 0.94033 1.07021 1.20163 0.86221 0.86891 0.75098 1.90707 1.17692 1.86152 1.50249 1.45655 1.10439 1.04554 1.75453 1.20598 0.96596 0.80315 1.01955 1.22953 0.98284 0.95625 0.99000 1.22939 0.98116 1.00646 0.94008 1.20527 0.96748 0.82068 1.00049 1.45566 1.33663 1.10943 1.44883 1.21154 0.80281 0.90854 0.79757 1.90827 1.54970 1.58301 1.42002 1.22069 0.87919 0.94076 0.96145 1.47646 1.04595 1.47391 1.06204 1.74022 0.92121 1.19490 1.29872 1.25433 1.03268 1.03658 0.88744 1.25435 0.87156 1.04815 1.03487 1.73986 1.27812 1.17879 0.95402 0.92002 0.87112 0.86771 0.74281 0.91731 0.92259 0.82551 0.81762 0.92503 0.91617 0.73387 0.80686 0.81234 0.75608 0.75338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 43.94 29.55 68.60 2.03 45.96 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.41 9.50 67.95 0.65 -30.77 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.16 -8.93 20.57 -56.49 -1.16 -10.10 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.91 7.85 87.66 0.69 20.60 16 12 O -0.57 -27.49 15.86 -3.04 -0.05 -27.54 16 13 N -0.71 -17.29 5.55 -466.79 -2.59 -19.88 16 14 C 0.13 2.75 5.76 85.63 0.49 3.24 16 15 C -0.14 -1.43 9.63 25.65 0.25 -1.18 16 16 C -0.14 -1.06 9.63 25.65 0.25 -0.81 16 17 C 0.13 1.96 5.76 85.63 0.49 2.45 16 18 N -0.70 -7.20 5.55 -466.78 -2.59 -9.79 16 19 C 0.49 8.82 7.90 87.66 0.69 9.51 16 20 O -0.58 -18.40 16.43 -3.05 -0.05 -18.45 16 21 C 0.12 1.25 7.02 85.63 0.60 1.85 16 22 N -0.16 -3.16 3.44 -190.80 -0.66 -3.82 16 23 N -0.31 -7.00 12.05 -56.87 -0.69 -7.68 16 24 C -0.03 -0.48 12.20 85.11 1.04 0.56 16 25 C -0.03 -0.43 12.20 85.11 1.04 0.61 16 26 N -0.31 -6.51 12.05 -56.86 -0.69 -7.20 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 29 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.42 6.87 8.46 -92.71 -0.78 6.09 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.56 5.29 -2.39 -0.01 1.55 16 33 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 35 H 0.06 1.27 5.30 -2.39 -0.01 1.26 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.43 0.27 8.46 -92.71 -0.78 -0.52 16 38 H 0.18 0.36 8.14 -2.38 -0.02 0.35 16 39 H 0.17 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.23 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.23 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -100.75 379.39 0.46 -100.29 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -0.48 Total: 12.28 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 7.09 Total: 2.53 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -6.92 Total: -104.98 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.10 Total: -45.99 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.10 kcal Total: -100.75 0.46 -100.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.641 kcal (2) G-P(sol) polarization free energy of solvation -100.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds