Wall clock time and date at job start Tue Mar 31 2020 23:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.39225 * 2 1 4 4 C 1.54388 * 110.34166 * 237.76336 * 2 1 3 5 5 N 1.48147 * 104.61663 * 217.26783 * 4 2 1 6 6 C 1.34781 * 127.83503 * 219.56491 * 5 4 2 7 7 O 1.21605 * 119.99962 * 180.02562 * 6 5 4 8 8 C 1.47446 * 120.00062 * 0.02562 * 6 5 4 9 9 C 1.37985 * 124.15661 * 179.97438 * 8 6 5 10 10 S 1.72094 * 104.03509 * 179.97438 * 9 8 6 11 11 N 1.56407 * 96.15716 * 0.02562 * 10 9 8 12 12 N 1.27417 * 109.86878 * 359.74713 * 11 10 9 13 13 C 1.48140 * 104.32571 * 39.58670 * 5 4 2 14 14 C 1.54286 * 110.33968 * 122.23125 * 2 1 3 15 15 H 1.09002 * 110.33934 * 237.73846 * 14 2 1 16 16 N 1.46901 * 110.34373 * 359.97438 * 14 2 1 17 17 C 1.46902 * 111.00215 * 195.71134 * 16 14 2 18 18 C 1.50699 * 109.46969 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00408 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99651 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99916 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00383 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99662 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46833 * 90.00614 * 25 23 21 27 27 H 1.48502 * 109.46912 * 210.00077 * 25 23 21 28 28 H 1.48498 * 109.47347 * 330.00122 * 25 23 21 29 29 H 1.09000 * 109.46806 * 304.06000 * 1 2 3 30 30 H 1.09001 * 109.46979 * 64.05567 * 1 2 3 31 31 H 1.08995 * 109.47391 * 184.05359 * 1 2 3 32 32 H 1.08999 * 110.41005 * 336.05009 * 4 2 1 33 33 H 1.08998 * 110.40829 * 98.47993 * 4 2 1 34 34 H 1.07998 * 127.98126 * 0.02562 * 9 8 6 35 35 H 1.09001 * 110.40352 * 201.63110 * 13 5 4 36 36 H 1.08996 * 110.50569 * 79.25237 * 13 5 4 37 37 H 1.00896 * 111.00109 * 319.66666 * 16 14 2 38 38 H 1.08997 * 109.47313 * 300.00437 * 17 16 14 39 39 H 1.09003 * 109.46987 * 59.99772 * 17 16 14 40 40 H 0.96997 * 119.99716 * 359.97438 * 20 18 17 41 41 H 0.96998 * 120.00057 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7722 -1.2245 5 7 3.2663 -1.4819 -0.7225 6 6 4.4423 -1.6670 -1.3546 7 8 5.3387 -2.2774 -0.8045 8 6 4.6417 -1.1295 -2.7130 9 6 5.8078 -1.2681 -3.4375 10 16 5.4759 -0.4614 -4.9210 11 7 4.0142 -0.0389 -4.5588 12 7 3.7193 -0.4566 -3.3916 13 6 2.8800 -1.9423 0.6315 14 6 2.0663 -0.7716 1.2237 15 1 2.7095 -0.1288 1.8248 16 7 0.9523 -1.2818 2.0341 17 6 1.4138 -1.6846 3.3693 18 6 0.2463 -2.2019 4.1694 19 8 -0.8614 -2.2317 3.6762 20 7 0.4328 -2.6306 5.4336 21 6 -0.6292 -3.1017 6.1614 22 1 -1.6154 -3.1290 5.7218 23 6 -0.4368 -3.5441 7.4644 24 7 0.7631 -3.5114 7.9990 25 14 -1.8841 -4.1854 8.4562 26 1 -2.0203 -5.6488 8.2435 27 1 -1.6550 -3.9141 9.8982 28 1 -3.1273 -3.5032 8.0156 29 1 -0.3633 0.5756 0.8514 30 1 -0.3633 0.4496 -0.9241 31 1 -0.3634 -1.0250 0.0726 32 1 1.3235 -1.4862 -1.5792 33 1 2.3401 -0.0797 -2.0206 34 1 6.7184 -1.7682 -3.1421 35 1 3.7671 -2.1326 1.2357 36 1 2.2645 -2.8396 0.5685 37 1 0.2103 -0.6011 2.0981 38 1 2.1641 -2.4693 3.2730 39 1 1.8506 -0.8248 3.8774 40 1 1.3185 -2.6064 5.8281 41 1 0.8973 -3.8199 8.9088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502730882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:36 Heat of formation + Delta-G solvation = 26.613563 kcal Electronic energy + Delta-G solvation = -26424.404304 eV Core-core repulsion = 22467.861097 eV Total energy + Delta-G solvation = -3956.543207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55110 -39.99668 -38.54602 -37.83271 -34.80312 -33.82037 -32.60543 -32.28272 -31.19009 -29.26817 -27.49229 -26.84861 -25.98369 -24.55662 -23.65852 -22.36750 -20.89980 -19.48026 -19.34790 -18.87906 -17.88336 -16.83569 -16.72358 -16.50000 -16.08364 -15.72280 -15.58893 -15.32522 -14.93859 -14.43833 -14.22558 -13.78753 -13.70188 -13.64445 -13.32523 -12.80859 -12.52572 -12.41176 -12.30919 -12.11636 -11.92523 -11.66572 -11.52207 -11.21615 -11.06583 -10.82997 -10.79780 -10.54438 -10.47330 -10.45820 -10.38977 -10.36010 -10.21028 -9.50364 -8.97825 -8.46364 -8.11204 -7.95647 -6.40991 -3.81856 -0.40718 0.44161 1.02308 1.05886 2.58438 2.80095 3.18564 3.27182 3.32803 3.36872 3.91133 4.08097 4.17809 4.28429 4.34045 4.47301 4.59036 4.77770 4.91899 5.11949 5.24330 5.27138 5.35367 5.43539 5.55004 5.68187 5.73526 5.79716 5.84789 5.93452 5.98046 6.06188 6.08668 6.27703 6.41939 6.99696 7.17476 7.23315 7.55865 7.62185 7.73683 8.06795 8.61662 9.18397 9.54961 10.06070 10.76688 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030681 B = 0.001972 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.406102 B =14192.448846 C =14873.605298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.079 0.921 4 C 0.097 3.903 5 N -0.602 5.602 6 C 0.621 3.379 7 O -0.528 6.528 8 C -0.015 4.015 9 C -0.236 4.236 10 S 0.463 5.537 11 N -0.291 5.291 12 N -0.208 5.208 13 C 0.114 3.886 14 C 0.074 3.926 15 H 0.053 0.947 16 N -0.658 5.658 17 C 0.046 3.954 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.358 0.642 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.194 8.534 -24.494 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.025 4.025 5 N -0.334 5.334 6 C 0.404 3.596 7 O -0.403 6.403 8 C -0.162 4.162 9 C -0.394 4.394 10 S 0.599 5.401 11 N -0.272 5.272 12 N -0.078 5.078 13 C -0.008 4.008 14 C -0.037 4.037 15 H 0.071 0.929 16 N -0.294 5.294 17 C -0.087 4.087 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.226 0.774 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.181 0.819 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.226 0.774 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.302 8.458 -26.069 29.646 hybrid contribution 0.524 -0.274 2.659 2.724 sum 11.826 8.184 -23.410 27.475 Atomic orbital electron populations 1.21733 0.92979 1.04059 1.01436 1.22209 0.97471 0.98839 0.93818 0.90277 1.22948 0.85861 0.96437 0.97302 1.48646 1.12468 1.54340 1.17936 1.16142 0.81439 0.79850 0.82154 1.90864 1.41552 1.42096 1.65825 1.22636 0.90828 1.03569 0.99146 1.28899 1.04482 1.06039 0.99939 1.81566 1.10230 1.33729 1.14582 1.78693 1.12980 1.23580 1.11900 1.71611 1.27164 1.09801 0.99244 1.22535 0.99086 0.97892 0.81297 1.22397 0.92764 0.94259 0.94312 0.92871 1.60296 1.09337 1.46445 1.13339 1.21764 0.97518 1.00069 0.89323 1.19772 0.89715 0.84805 0.83034 1.90520 1.25542 1.60175 1.70531 1.41868 1.11432 1.55605 1.11091 1.19696 0.90600 1.37960 0.94604 0.87903 1.25269 0.97781 0.97719 0.97230 1.69610 1.21142 1.47533 1.15975 0.85855 0.80939 0.79101 0.78369 1.20391 1.20966 1.19432 0.92168 0.92517 0.90066 0.90250 0.87396 0.77357 0.89855 0.88935 0.81866 0.89576 0.93728 0.77448 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.81 37.16 0.29 -1.21 16 2 C -0.10 -1.08 3.66 -89.22 -0.33 -1.41 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.10 1.03 6.18 -2.41 -0.01 1.01 16 5 N -0.60 -7.35 3.32 -170.57 -0.57 -7.92 16 6 C 0.62 7.95 7.91 -12.51 -0.10 7.85 16 7 O -0.53 -8.08 17.06 5.27 0.09 -7.99 16 8 C -0.01 -0.15 6.79 -83.78 -0.57 -0.72 16 9 C -0.24 -1.64 11.21 30.64 0.34 -1.30 16 10 S 0.46 2.37 23.38 -107.50 -2.51 -0.15 16 11 N -0.29 -2.61 12.49 60.35 0.75 -1.86 16 12 N -0.21 -2.15 8.49 32.74 0.28 -1.87 16 13 C 0.11 1.47 6.36 -2.41 -0.02 1.45 16 14 C 0.07 0.91 3.34 -66.31 -0.22 0.69 16 15 H 0.05 0.64 7.97 -51.93 -0.41 0.23 16 16 N -0.66 -10.00 4.95 -106.51 -0.53 -10.53 16 17 C 0.05 0.79 6.01 -4.98 -0.03 0.76 16 18 C 0.44 10.26 7.82 -10.98 -0.09 10.17 16 19 O -0.58 -15.51 15.78 5.55 0.09 -15.43 16 20 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.06 0.64 7.06 -51.93 -0.37 0.27 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 32 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 33 H 0.11 1.11 5.38 -51.93 -0.28 0.83 16 34 H 0.21 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 36 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 37 H 0.36 5.56 5.89 -39.29 -0.23 5.33 16 38 H 0.09 1.39 7.87 -51.93 -0.41 0.98 16 39 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -33.38 358.25 -7.17 -40.56 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.85 Total: 12.56 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.97 Total: 9.32 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.61 Total: -60.33 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.18 Total: -23.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.51 Total: -0.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.38 -7.17 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502730882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.171 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds