Wall clock time and date at job start Tue Mar 31 2020 23:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.39225 * 2 1 4 4 C 1.54388 * 110.34166 * 237.76336 * 2 1 3 5 5 N 1.48147 * 104.61663 * 217.26783 * 4 2 1 6 6 C 1.34781 * 127.83503 * 219.56491 * 5 4 2 7 7 O 1.21605 * 119.99962 * 180.02562 * 6 5 4 8 8 C 1.47446 * 120.00062 * 0.02562 * 6 5 4 9 9 C 1.37985 * 124.15661 * 179.97438 * 8 6 5 10 10 S 1.72094 * 104.03509 * 179.97438 * 9 8 6 11 11 N 1.56407 * 96.15716 * 0.02562 * 10 9 8 12 12 N 1.27417 * 109.86878 * 359.74713 * 11 10 9 13 13 C 1.48140 * 104.32571 * 39.58670 * 5 4 2 14 14 C 1.54286 * 110.33968 * 122.23125 * 2 1 3 15 15 H 1.09002 * 110.33934 * 237.73846 * 14 2 1 16 16 N 1.46901 * 110.34373 * 359.97438 * 14 2 1 17 17 C 1.46902 * 111.00215 * 195.71134 * 16 14 2 18 18 C 1.50699 * 109.46969 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00408 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99651 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99916 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00383 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99662 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46833 * 90.00614 * 25 23 21 27 27 H 1.48502 * 109.46912 * 210.00077 * 25 23 21 28 28 H 1.48498 * 109.47347 * 330.00122 * 25 23 21 29 29 H 1.09000 * 109.46806 * 304.06000 * 1 2 3 30 30 H 1.09001 * 109.46979 * 64.05567 * 1 2 3 31 31 H 1.08995 * 109.47391 * 184.05359 * 1 2 3 32 32 H 1.08999 * 110.41005 * 336.05009 * 4 2 1 33 33 H 1.08998 * 110.40829 * 98.47993 * 4 2 1 34 34 H 1.07998 * 127.98126 * 0.02562 * 9 8 6 35 35 H 1.09001 * 110.40352 * 201.63110 * 13 5 4 36 36 H 1.08996 * 110.50569 * 79.25237 * 13 5 4 37 37 H 1.00896 * 111.00109 * 319.66666 * 16 14 2 38 38 H 1.08997 * 109.47313 * 300.00437 * 17 16 14 39 39 H 1.09003 * 109.46987 * 59.99772 * 17 16 14 40 40 H 0.96997 * 119.99716 * 359.97438 * 20 18 17 41 41 H 0.96998 * 120.00057 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7722 -1.2245 5 7 3.2663 -1.4819 -0.7225 6 6 4.4423 -1.6670 -1.3546 7 8 5.3387 -2.2774 -0.8045 8 6 4.6417 -1.1295 -2.7130 9 6 5.8078 -1.2681 -3.4375 10 16 5.4759 -0.4614 -4.9210 11 7 4.0142 -0.0389 -4.5588 12 7 3.7193 -0.4566 -3.3916 13 6 2.8800 -1.9423 0.6315 14 6 2.0663 -0.7716 1.2237 15 1 2.7095 -0.1288 1.8248 16 7 0.9523 -1.2818 2.0341 17 6 1.4138 -1.6846 3.3693 18 6 0.2463 -2.2019 4.1694 19 8 -0.8614 -2.2317 3.6762 20 7 0.4328 -2.6306 5.4336 21 6 -0.6292 -3.1017 6.1614 22 1 -1.6154 -3.1290 5.7218 23 6 -0.4368 -3.5441 7.4644 24 7 0.7631 -3.5114 7.9990 25 14 -1.8841 -4.1854 8.4562 26 1 -2.0203 -5.6488 8.2435 27 1 -1.6550 -3.9141 9.8982 28 1 -3.1273 -3.5032 8.0156 29 1 -0.3633 0.5756 0.8514 30 1 -0.3633 0.4496 -0.9241 31 1 -0.3634 -1.0250 0.0726 32 1 1.3235 -1.4862 -1.5792 33 1 2.3401 -0.0797 -2.0206 34 1 6.7184 -1.7682 -3.1421 35 1 3.7671 -2.1326 1.2357 36 1 2.2645 -2.8396 0.5685 37 1 0.2103 -0.6011 2.0981 38 1 2.1641 -2.4693 3.2730 39 1 1.8506 -0.8248 3.8774 40 1 1.3185 -2.6064 5.8281 41 1 0.8973 -3.8199 8.9088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502730882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:35 Heat of formation + Delta-G solvation = 1.016059 kcal Electronic energy + Delta-G solvation = -26425.514295 eV Core-core repulsion = 22467.861097 eV Total energy + Delta-G solvation = -3957.653198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25900 -40.94241 -40.09341 -39.13923 -36.22092 -35.60417 -33.49114 -33.23203 -33.09225 -30.30784 -28.46906 -27.84828 -27.20520 -25.98069 -24.86498 -23.23436 -21.60500 -21.10889 -20.43014 -19.98008 -19.71474 -17.85708 -17.61859 -17.37378 -17.25111 -16.96889 -16.74639 -16.39808 -16.12869 -15.93023 -15.65930 -15.35176 -14.98915 -14.73683 -14.16203 -14.04822 -13.78545 -13.54964 -13.44105 -13.11377 -13.06674 -13.03330 -12.87347 -12.73913 -12.40805 -12.19135 -12.11595 -11.80142 -11.69507 -11.49737 -11.43380 -11.19375 -11.11493 -10.90388 -10.32933 -10.00894 -9.95513 -9.37440 -8.45917 -5.94565 -0.95620 -0.07338 0.26377 0.51629 1.38506 1.42147 1.54909 1.70040 1.92142 2.06022 2.29457 2.64244 2.92727 3.21490 3.37392 3.51414 3.57717 3.62687 3.75404 3.98852 4.26687 4.28648 4.31174 4.36407 4.47830 4.52142 4.57729 4.69420 4.75814 4.82007 4.92004 5.08264 5.12427 5.20613 5.41798 5.53309 5.88036 6.08844 6.24225 6.37526 6.42441 6.60536 6.81389 7.13221 7.57132 8.11897 8.71484 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030681 B = 0.001972 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.406102 B =14192.448846 C =14873.605298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.096 0.904 4 C 0.103 3.897 5 N -0.604 5.604 6 C 0.618 3.382 7 O -0.562 6.562 8 C -0.042 4.042 9 C -0.238 4.238 10 S 0.571 5.429 11 N -0.331 5.331 12 N -0.228 5.228 13 C 0.115 3.885 14 C 0.079 3.921 15 H 0.064 0.936 16 N -0.665 5.665 17 C 0.060 3.940 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.227 0.773 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.356 0.644 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.317 9.448 -25.921 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.114 0.886 4 C -0.020 4.020 5 N -0.335 5.335 6 C 0.403 3.597 7 O -0.441 6.441 8 C -0.189 4.189 9 C -0.394 4.394 10 S 0.706 5.294 11 N -0.311 5.311 12 N -0.097 5.097 13 C -0.008 4.008 14 C -0.032 4.032 15 H 0.081 0.919 16 N -0.302 5.302 17 C -0.072 4.072 18 C 0.228 3.772 19 O -0.506 6.506 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.244 0.756 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.180 0.820 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.230 0.770 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.431 9.390 -27.513 31.617 hybrid contribution 0.284 -0.538 2.909 2.972 sum 12.715 8.852 -24.604 29.075 Atomic orbital electron populations 1.21663 0.92910 1.02787 1.02327 1.22203 0.97383 0.99342 0.92577 0.88555 1.22974 0.85148 0.96364 0.97483 1.48717 1.12910 1.54223 1.17623 1.16505 0.80949 0.79238 0.83004 1.90830 1.42543 1.43713 1.66977 1.22371 0.92435 1.05535 0.98576 1.29272 1.04148 1.05289 1.00724 1.81195 1.06548 1.30268 1.11371 1.78348 1.16140 1.24904 1.11734 1.71620 1.27798 1.10462 0.99830 1.22421 0.98654 0.97726 0.82010 1.22400 0.91919 0.94246 0.94649 0.91860 1.60261 1.10408 1.47144 1.12395 1.21612 0.94854 1.01115 0.89646 1.20795 0.90865 0.83044 0.82533 1.90490 1.27715 1.61218 1.71179 1.41945 1.11038 1.56309 1.11865 1.19668 0.90605 1.40094 0.95774 0.90176 1.26057 1.00454 0.97335 0.97628 1.69674 1.22477 1.47595 1.16464 0.84920 0.77623 0.78513 0.77234 1.19766 1.19613 1.19634 0.92352 0.90665 0.92230 0.90528 0.86626 0.75582 0.90459 0.90323 0.82033 0.88241 0.91436 0.77043 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 7.81 71.98 0.56 -2.22 16 2 C -0.10 -1.87 3.66 -9.89 -0.04 -1.91 16 3 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.10 2.10 6.18 86.53 0.53 2.64 16 5 N -0.60 -14.67 3.32 -811.81 -2.69 -17.36 16 6 C 0.62 15.79 7.91 86.67 0.69 16.47 16 7 O -0.56 -17.39 17.06 -4.05 -0.07 -17.46 16 8 C -0.04 -0.82 6.79 41.36 0.28 -0.54 16 9 C -0.24 -2.82 11.21 67.76 0.76 -2.06 16 10 S 0.57 4.16 23.38 -56.49 -1.32 2.84 16 11 N -0.33 -5.32 12.49 37.02 0.46 -4.85 16 12 N -0.23 -4.46 8.49 -50.34 -0.43 -4.89 16 13 C 0.11 2.96 6.36 86.53 0.55 3.51 16 14 C 0.08 1.87 3.34 45.82 0.15 2.02 16 15 H 0.06 1.42 7.97 -2.39 -0.02 1.40 16 16 N -0.67 -20.04 4.95 -490.89 -2.43 -22.47 16 17 C 0.06 2.04 6.01 85.56 0.51 2.55 16 18 C 0.44 20.78 7.82 87.66 0.69 21.47 16 19 O -0.62 -33.80 15.78 -3.07 -0.05 -33.85 16 20 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 25 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.06 1.19 7.06 -2.39 -0.02 1.18 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.47 7.54 -2.39 -0.02 1.45 16 32 H 0.08 1.61 7.86 -2.39 -0.02 1.59 16 33 H 0.12 2.27 5.38 -2.39 -0.01 2.26 16 34 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.08 2.07 7.88 -2.39 -0.02 2.05 16 36 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 37 H 0.36 11.00 5.89 -89.70 -0.53 10.47 16 38 H 0.10 3.14 7.87 -2.39 -0.02 3.12 16 39 H 0.07 2.01 8.10 -2.39 -0.02 2.00 16 40 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 41 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -73.65 358.25 -0.02 -73.67 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.15 Total: 36.69 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 5.97 Total: 23.50 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -6.43 Total: -130.64 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.12 Total: -51.32 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Total: -73.65 -0.02 -73.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502730882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.687 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds