Wall clock time and date at job start Tue Mar 31 2020 23:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64136 * 2 1 4 4 C 1.54320 * 110.72507 * 123.14654 * 2 1 3 5 5 N 1.47019 * 107.27230 * 96.16679 * 4 2 1 6 6 C 1.34777 * 125.65200 * 178.97474 * 5 4 2 7 7 O 1.21600 * 120.00533 * 179.97438 * 6 5 4 8 8 C 1.47454 * 119.99696 * 359.97438 * 6 5 4 9 9 C 1.37983 * 124.15295 * 179.72529 * 8 6 5 10 10 S 1.72097 * 104.02959 * 179.89810 * 9 8 6 11 11 N 1.56409 * 96.15792 * 0.32173 * 10 9 8 12 12 N 1.27409 * 109.87047 * 359.80417 * 11 10 9 13 13 C 1.47426 * 108.70606 * 358.94663 * 5 4 2 14 14 C 1.54913 * 104.82930 * 24.12615 * 13 5 4 15 15 H 1.08995 * 111.00761 * 81.06678 * 14 13 5 16 16 N 1.46899 * 111.00465 * 204.91971 * 14 13 5 17 17 C 1.46898 * 110.99810 * 267.19573 * 16 14 13 18 18 C 1.50701 * 109.47049 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00137 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00123 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00283 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99536 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99921 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99673 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00433 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47303 * 89.99706 * 25 23 21 27 27 H 1.48501 * 109.47609 * 210.00173 * 25 23 21 28 28 H 1.48505 * 109.47107 * 330.00317 * 25 23 21 29 29 H 1.09002 * 109.47153 * 298.30586 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.30777 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.30758 * 1 2 3 32 32 H 1.09001 * 109.88687 * 215.59104 * 4 2 1 33 33 H 1.09003 * 109.87981 * 336.59810 * 4 2 1 34 34 H 1.08003 * 127.98330 * 359.97438 * 9 8 6 35 35 H 1.09002 * 110.36978 * 142.95985 * 13 5 4 36 36 H 1.09003 * 110.36785 * 265.18010 * 13 5 4 37 37 H 1.00902 * 111.00203 * 31.15073 * 16 14 13 38 38 H 1.08996 * 109.47266 * 299.99560 * 17 16 14 39 39 H 1.08999 * 109.47382 * 60.00338 * 17 16 14 40 40 H 0.96999 * 119.99748 * 0.02562 * 20 18 17 41 41 H 0.96999 * 119.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 2.3716 -2.1519 0.7424 6 6 2.8851 -3.1453 1.4947 7 8 3.0891 -4.2381 1.0018 8 6 3.1996 -2.9071 2.9155 9 6 3.7215 -3.8618 3.7640 10 16 3.8839 -3.0399 5.2673 11 7 3.3221 -1.6676 4.7698 12 7 3.0101 -1.7486 3.5371 13 6 2.0126 -2.2520 -0.6839 14 6 2.0790 -0.7974 -1.2126 15 1 3.1061 -0.5096 -1.4368 16 7 1.2173 -0.6251 -2.3897 17 6 1.9720 -0.8430 -3.6310 18 6 1.0573 -0.6575 -4.8142 19 8 -0.1088 -0.3724 -4.6405 20 7 1.5349 -0.8085 -6.0654 21 6 0.7026 -0.6403 -7.1419 22 1 -0.3356 -0.3864 -6.9872 23 6 1.1950 -0.7964 -8.4318 24 7 0.3973 -0.6347 -9.4635 25 14 2.9906 -1.2363 -8.6994 26 1 3.1391 -2.7135 -8.7304 27 1 3.4533 -0.6650 -9.9896 28 1 3.8070 -0.6800 -7.5906 29 1 -0.3633 0.4873 0.9048 30 1 -0.3633 -1.0272 -0.0303 31 1 -0.3634 0.5399 -0.8744 32 1 2.9869 -0.3180 1.5780 33 1 1.3274 -0.8199 2.0001 34 1 3.9716 -4.8876 3.5369 35 1 2.7294 -2.8807 -1.2123 36 1 1.0046 -2.6519 -0.7943 37 1 0.4147 -1.2349 -2.3427 38 1 2.7906 -0.1257 -3.6892 39 1 2.3751 -1.8557 -3.6382 40 1 2.4674 -1.0369 -6.2043 41 1 0.7409 -0.7441 -10.3640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502730883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:39 Heat of formation + Delta-G solvation = 23.401259 kcal Electronic energy + Delta-G solvation = -26436.577926 eV Core-core repulsion = 22479.895422 eV Total energy + Delta-G solvation = -3956.682503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61113 -40.17429 -38.66310 -38.01170 -34.90931 -33.88469 -32.69327 -32.29701 -31.65433 -29.33381 -27.58284 -26.82020 -26.34604 -24.53363 -23.47357 -22.38600 -20.91024 -19.93703 -19.44051 -19.01634 -18.39763 -16.99873 -16.72856 -16.55187 -16.06608 -15.97953 -15.48476 -15.35657 -14.83799 -14.59814 -14.28438 -13.92552 -13.58505 -13.40217 -13.10541 -12.96491 -12.81872 -12.72747 -12.57363 -12.46191 -12.18412 -11.99031 -11.81419 -11.36018 -11.17919 -10.98108 -10.81550 -10.64073 -10.59378 -10.58969 -10.53360 -10.41545 -9.98115 -9.58083 -9.00248 -8.62071 -8.24240 -8.17652 -6.31695 -3.83225 -0.45075 0.40089 0.98349 1.02614 2.50912 2.71622 3.02523 3.06720 3.15140 3.31924 3.72292 3.96887 4.09746 4.13817 4.23404 4.39822 4.49855 4.78487 4.80868 4.88688 4.99901 5.08524 5.20977 5.37865 5.51034 5.52563 5.55919 5.65702 5.75282 5.78027 5.84373 5.92743 6.01692 6.13425 6.41856 6.94969 7.00066 7.07811 7.45257 7.57096 7.64299 8.13540 8.58553 8.94117 9.41556 9.81064 10.81334 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002066 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.933991 B =13547.796225 C =14234.133080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.109 3.891 5 N -0.594 5.594 6 C 0.615 3.385 7 O -0.527 6.527 8 C -0.018 4.018 9 C -0.236 4.236 10 S 0.462 5.538 11 N -0.290 5.290 12 N -0.205 5.205 13 C 0.077 3.923 14 C 0.080 3.920 15 H 0.095 0.905 16 N -0.647 5.647 17 C 0.044 3.956 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.209 0.791 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.355 0.645 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.371 0.629 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.740 -5.150 30.245 32.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.113 0.887 4 C -0.013 4.013 5 N -0.326 5.326 6 C 0.398 3.602 7 O -0.403 6.403 8 C -0.165 4.165 9 C -0.393 4.393 10 S 0.598 5.402 11 N -0.271 5.271 12 N -0.076 5.076 13 C -0.047 4.047 14 C -0.032 4.032 15 H 0.113 0.887 16 N -0.279 5.279 17 C -0.089 4.089 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.176 0.824 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.203 0.797 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.090 -3.614 31.268 33.054 hybrid contribution 1.494 -2.206 -1.726 3.174 sum 11.584 -5.820 29.542 32.262 Atomic orbital electron populations 1.21707 0.93407 1.01983 1.02679 1.22269 0.97439 0.99384 0.92094 0.88669 1.22386 1.01304 0.80494 0.97160 1.48110 1.61015 1.12087 1.11378 1.16248 0.78010 0.83584 0.82354 1.90863 1.54221 1.23281 1.71926 1.22595 1.05921 0.89567 0.98440 1.28901 1.04109 1.07612 0.98718 1.81589 1.44933 1.00509 1.13195 1.78700 1.19344 1.20347 1.08694 1.71708 1.14872 1.21283 0.99714 1.23242 1.01510 0.99845 0.80143 1.22843 0.97813 0.91616 0.90913 0.88704 1.60154 1.08756 1.59980 0.99002 1.21813 0.96769 1.00291 0.89995 1.19659 0.88994 0.84346 0.83471 1.90570 1.17639 1.51474 1.84949 1.42207 1.11144 1.63719 1.05846 1.19427 0.95868 1.45167 0.82888 0.86253 1.25046 0.98240 0.97690 0.95222 1.69623 1.35348 1.48493 0.98595 0.86669 0.84685 0.79325 0.78690 1.19656 1.20173 1.19464 0.92909 0.93222 0.90074 0.90482 0.90295 0.77410 0.90008 0.90523 0.82352 0.89228 0.93480 0.79678 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.27 37.16 0.31 -1.14 16 2 C -0.09 -0.89 3.56 -88.78 -0.32 -1.21 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.11 1.04 5.06 -3.07 -0.02 1.02 16 5 N -0.59 -6.55 3.33 -171.77 -0.57 -7.12 16 6 C 0.61 7.38 7.84 -12.51 -0.10 7.28 16 7 O -0.53 -7.69 17.05 5.28 0.09 -7.60 16 8 C -0.02 -0.18 6.76 -83.78 -0.57 -0.74 16 9 C -0.24 -1.55 11.21 30.64 0.34 -1.21 16 10 S 0.46 2.23 23.38 -107.50 -2.51 -0.29 16 11 N -0.29 -2.51 12.49 60.35 0.75 -1.76 16 12 N -0.21 -2.03 8.86 32.74 0.29 -1.74 16 13 C 0.08 0.86 6.18 -2.53 -0.02 0.84 16 14 C 0.08 0.87 3.17 -65.56 -0.21 0.66 16 15 H 0.09 0.98 7.83 -51.93 -0.41 0.57 16 16 N -0.65 -9.08 4.95 -105.72 -0.52 -9.61 16 17 C 0.04 0.68 6.03 -4.98 -0.03 0.65 16 18 C 0.45 9.90 7.82 -10.98 -0.09 9.81 16 19 O -0.56 -14.74 15.78 5.55 0.09 -14.65 16 20 N -0.59 -13.83 5.09 -10.96 -0.06 -13.88 16 21 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 25 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.52 7.45 -51.93 -0.39 0.13 16 31 H 0.08 0.99 7.65 -51.93 -0.40 0.60 16 32 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.08 0.76 7.38 -51.93 -0.38 0.37 16 34 H 0.21 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.08 0.87 7.33 -51.93 -0.38 0.49 16 37 H 0.36 5.24 7.52 -39.29 -0.30 4.95 16 38 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -34.62 357.71 -6.89 -41.50 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -4.96 Total: 11.76 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -0.93 Total: 8.29 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.67 Total: -59.00 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.18 Total: -22.25 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.62 -6.89 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502730883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.903 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds