Wall clock time and date at job start Tue Mar 31 2020 23:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64136 * 2 1 4 4 C 1.54320 * 110.72507 * 123.14654 * 2 1 3 5 5 N 1.47019 * 107.27230 * 96.16679 * 4 2 1 6 6 C 1.34777 * 125.65200 * 178.97474 * 5 4 2 7 7 O 1.21600 * 120.00533 * 179.97438 * 6 5 4 8 8 C 1.47454 * 119.99696 * 359.97438 * 6 5 4 9 9 C 1.37983 * 124.15295 * 179.72529 * 8 6 5 10 10 S 1.72097 * 104.02959 * 179.89810 * 9 8 6 11 11 N 1.56409 * 96.15792 * 0.32173 * 10 9 8 12 12 N 1.27409 * 109.87047 * 359.80417 * 11 10 9 13 13 C 1.47426 * 108.70606 * 358.94663 * 5 4 2 14 14 C 1.54913 * 104.82930 * 24.12615 * 13 5 4 15 15 H 1.08995 * 111.00761 * 81.06678 * 14 13 5 16 16 N 1.46899 * 111.00465 * 204.91971 * 14 13 5 17 17 C 1.46898 * 110.99810 * 267.19573 * 16 14 13 18 18 C 1.50701 * 109.47049 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00137 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00123 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00283 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99536 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99921 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99673 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00433 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47303 * 89.99706 * 25 23 21 27 27 H 1.48501 * 109.47609 * 210.00173 * 25 23 21 28 28 H 1.48505 * 109.47107 * 330.00317 * 25 23 21 29 29 H 1.09002 * 109.47153 * 298.30586 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.30777 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.30758 * 1 2 3 32 32 H 1.09001 * 109.88687 * 215.59104 * 4 2 1 33 33 H 1.09003 * 109.87981 * 336.59810 * 4 2 1 34 34 H 1.08003 * 127.98330 * 359.97438 * 9 8 6 35 35 H 1.09002 * 110.36978 * 142.95985 * 13 5 4 36 36 H 1.09003 * 110.36785 * 265.18010 * 13 5 4 37 37 H 1.00902 * 111.00203 * 31.15073 * 16 14 13 38 38 H 1.08996 * 109.47266 * 299.99560 * 17 16 14 39 39 H 1.08999 * 109.47382 * 60.00338 * 17 16 14 40 40 H 0.96999 * 119.99748 * 0.02562 * 20 18 17 41 41 H 0.96999 * 119.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 2.3716 -2.1519 0.7424 6 6 2.8851 -3.1453 1.4947 7 8 3.0891 -4.2381 1.0018 8 6 3.1996 -2.9071 2.9155 9 6 3.7215 -3.8618 3.7640 10 16 3.8839 -3.0399 5.2673 11 7 3.3221 -1.6676 4.7698 12 7 3.0101 -1.7486 3.5371 13 6 2.0126 -2.2520 -0.6839 14 6 2.0790 -0.7974 -1.2126 15 1 3.1061 -0.5096 -1.4368 16 7 1.2173 -0.6251 -2.3897 17 6 1.9720 -0.8430 -3.6310 18 6 1.0573 -0.6575 -4.8142 19 8 -0.1088 -0.3724 -4.6405 20 7 1.5349 -0.8085 -6.0654 21 6 0.7026 -0.6403 -7.1419 22 1 -0.3356 -0.3864 -6.9872 23 6 1.1950 -0.7964 -8.4318 24 7 0.3973 -0.6347 -9.4635 25 14 2.9906 -1.2363 -8.6994 26 1 3.1391 -2.7135 -8.7304 27 1 3.4533 -0.6650 -9.9896 28 1 3.8070 -0.6800 -7.5906 29 1 -0.3633 0.4873 0.9048 30 1 -0.3633 -1.0272 -0.0303 31 1 -0.3634 0.5399 -0.8744 32 1 2.9869 -0.3180 1.5780 33 1 1.3274 -0.8199 2.0001 34 1 3.9716 -4.8876 3.5369 35 1 2.7294 -2.8807 -1.2123 36 1 1.0046 -2.6519 -0.7943 37 1 0.4147 -1.2349 -2.3427 38 1 2.7906 -0.1257 -3.6892 39 1 2.3751 -1.8557 -3.6382 40 1 2.4674 -1.0369 -6.2043 41 1 0.7409 -0.7441 -10.3640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502730883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:38 Heat of formation + Delta-G solvation = -4.799580 kcal Electronic energy + Delta-G solvation = -26437.800806 eV Core-core repulsion = 22479.895422 eV Total energy + Delta-G solvation = -3957.905383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27197 -41.01634 -40.22504 -39.14379 -36.25615 -35.62730 -33.75774 -33.43401 -33.06024 -30.31912 -28.46316 -27.70267 -27.51843 -25.85947 -24.69313 -23.15294 -21.54872 -21.30992 -20.78858 -20.32179 -19.73492 -17.93773 -17.64586 -17.34027 -17.26996 -17.02432 -16.65726 -16.47185 -16.05832 -15.83784 -15.30033 -15.19317 -14.97499 -14.52013 -14.38701 -14.19383 -14.04864 -13.65835 -13.64289 -13.44791 -13.19579 -13.05969 -12.99186 -12.87039 -12.40537 -12.22108 -11.98953 -11.82040 -11.62461 -11.50223 -11.42772 -11.22574 -11.19323 -10.90104 -10.41479 -10.23804 -9.87250 -9.36179 -8.40399 -6.01056 -0.96004 -0.07178 0.28068 0.52414 1.31007 1.36159 1.44999 1.71347 1.91379 1.97309 2.23651 2.61593 2.76173 3.16248 3.28067 3.43548 3.61074 3.64207 3.78700 3.97307 4.11879 4.18913 4.24092 4.31560 4.42201 4.52767 4.58431 4.68505 4.74833 4.80220 4.95044 5.05250 5.18615 5.30900 5.52711 5.54464 5.90104 6.02171 6.19066 6.29952 6.39830 6.60410 6.80644 6.89300 7.41049 7.97505 8.77181 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002066 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.933991 B =13547.796225 C =14234.133080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.108 0.892 4 C 0.119 3.881 5 N -0.594 5.594 6 C 0.612 3.388 7 O -0.562 6.562 8 C -0.044 4.044 9 C -0.238 4.238 10 S 0.564 5.436 11 N -0.331 5.331 12 N -0.224 5.224 13 C 0.078 3.922 14 C 0.087 3.913 15 H 0.112 0.888 16 N -0.659 5.659 17 C 0.058 3.942 18 C 0.450 3.550 19 O -0.612 6.612 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.230 1.230 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.348 0.652 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.390 0.610 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.457 -5.824 32.844 36.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.126 0.874 4 C -0.003 4.003 5 N -0.326 5.326 6 C 0.396 3.604 7 O -0.441 6.441 8 C -0.192 4.192 9 C -0.395 4.395 10 S 0.699 5.301 11 N -0.311 5.311 12 N -0.094 5.094 13 C -0.046 4.046 14 C -0.024 4.024 15 H 0.130 0.870 16 N -0.290 5.290 17 C -0.074 4.074 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.153 1.153 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.169 0.831 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.225 0.775 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.816 -4.258 33.909 36.862 hybrid contribution 0.224 -2.025 -2.333 3.097 sum 14.040 -6.283 31.576 35.123 Atomic orbital electron populations 1.21637 0.94079 1.01320 1.02259 1.22259 0.96778 0.99950 0.91600 0.87385 1.22345 1.01553 0.79641 0.96791 1.48180 1.60573 1.12552 1.11254 1.16562 0.77387 0.83126 0.83279 1.90830 1.55855 1.24485 1.72903 1.22395 1.08172 0.90842 0.97792 1.29267 1.02543 1.08184 0.99480 1.81231 1.41447 0.97214 1.10168 1.78371 1.20869 1.23376 1.08516 1.71735 1.15717 1.21626 1.00284 1.23159 1.01019 0.99881 0.80541 1.22857 0.98029 0.91621 0.89901 0.87049 1.60161 1.09101 1.60219 0.99529 1.21751 0.95513 1.02873 0.87303 1.20952 0.89229 0.81462 0.84609 1.90552 1.20415 1.52814 1.85885 1.42039 1.11505 1.64563 1.05244 1.19001 0.94309 1.47009 0.85274 0.92600 1.26120 1.04709 0.96702 0.93995 1.69807 1.38560 1.49748 0.99431 0.85369 0.76885 0.79626 0.79675 1.18322 1.20124 1.15309 0.91619 0.93915 0.92247 0.89768 0.90353 0.75691 0.90373 0.91262 0.83149 0.86294 0.90481 0.77487 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.27 71.98 0.60 -2.12 16 2 C -0.09 -1.53 3.56 -9.60 -0.03 -1.56 16 3 H 0.11 1.69 8.14 -2.38 -0.02 1.68 16 4 C 0.12 2.08 5.06 86.73 0.44 2.52 16 5 N -0.59 -12.50 3.33 -815.62 -2.71 -15.21 16 6 C 0.61 14.24 7.84 86.67 0.68 14.92 16 7 O -0.56 -16.18 17.05 -4.03 -0.07 -16.25 16 8 C -0.04 -0.81 6.76 41.36 0.28 -0.53 16 9 C -0.24 -2.60 11.21 67.76 0.76 -1.84 16 10 S 0.56 3.77 23.38 -56.49 -1.32 2.45 16 11 N -0.33 -5.06 12.49 37.02 0.46 -4.60 16 12 N -0.22 -4.11 8.86 -50.34 -0.45 -4.56 16 13 C 0.08 1.66 6.18 86.86 0.54 2.20 16 14 C 0.09 1.72 3.17 46.31 0.15 1.87 16 15 H 0.11 1.90 7.83 -2.39 -0.02 1.88 16 16 N -0.66 -17.67 4.95 -488.40 -2.42 -20.08 16 17 C 0.06 1.65 6.03 85.56 0.52 2.17 16 18 C 0.45 19.74 7.82 87.66 0.69 20.43 16 19 O -0.61 -33.22 15.78 -3.07 -0.05 -33.27 16 20 N -0.59 -27.53 5.09 -306.99 -1.56 -29.09 16 21 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 24 N -0.93 -56.52 13.96 21.66 0.30 -56.22 16 25 Si 0.96 38.80 27.74 68.60 1.90 40.70 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 28 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.90 7.45 -2.39 -0.02 0.88 16 31 H 0.06 1.47 7.65 -2.38 -0.02 1.45 16 32 H 0.08 1.40 7.56 -2.39 -0.02 1.38 16 33 H 0.08 1.42 7.38 -2.39 -0.02 1.40 16 34 H 0.23 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 36 H 0.07 1.57 7.33 -2.39 -0.02 1.55 16 37 H 0.35 10.27 7.52 -89.69 -0.67 9.60 16 38 H 0.12 2.80 8.09 -2.39 -0.02 2.78 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.39 14.96 5.76 -92.71 -0.53 14.43 16 41 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -81.67 357.71 -0.15 -81.82 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.17 Total: 34.95 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.93 Total: 19.36 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.38 Total: -129.76 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.12 Total: -49.52 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.32 Total: 2.45 kcal Total: -81.67 -0.15 -81.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502730883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.020 kcal (2) G-P(sol) polarization free energy of solvation -81.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds