Wall clock time and date at job start Tue Mar 31 2020 23:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.88809 * 2 1 4 4 C 1.55134 * 110.90698 * 124.09302 * 2 1 3 5 5 N 1.47423 * 104.72186 * 155.27433 * 4 2 1 6 6 C 1.34779 * 125.65152 * 155.82033 * 5 4 2 7 7 O 1.21604 * 120.00182 * 179.68728 * 6 5 4 8 8 C 1.47450 * 119.99253 * 359.69256 * 6 5 4 9 9 C 1.37988 * 124.14677 * 179.97438 * 8 6 5 10 10 S 1.72108 * 104.02744 * 179.97438 * 9 8 6 11 11 N 1.56405 * 96.15666 * 0.02562 * 10 9 8 12 12 N 1.27414 * 109.87334 * 359.97438 * 11 10 9 13 13 C 1.47028 * 108.70156 * 335.55317 * 5 4 2 14 14 C 1.54322 * 107.27336 * 1.28864 * 13 5 4 15 15 H 1.08991 * 110.72047 * 263.64804 * 14 13 5 16 16 N 1.46896 * 110.71930 * 140.55218 * 14 13 5 17 17 C 1.46895 * 110.99970 * 86.45494 * 16 14 13 18 18 C 1.50704 * 109.47155 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00050 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99746 * 179.97438 * 18 17 16 21 21 C 1.37108 * 119.99850 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99423 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00050 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00265 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00048 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47669 * 89.99665 * 25 23 21 27 27 H 1.48504 * 109.47243 * 209.99728 * 25 23 21 28 28 H 1.48501 * 109.47353 * 329.99313 * 25 23 21 29 29 H 1.09000 * 109.47320 * 183.88458 * 1 2 3 30 30 H 1.09004 * 109.47166 * 303.87969 * 1 2 3 31 31 H 1.08995 * 109.47259 * 63.87678 * 1 2 3 32 32 H 1.09004 * 110.49165 * 36.43897 * 4 2 1 33 33 H 1.08995 * 110.34647 * 274.03968 * 4 2 1 34 34 H 1.07993 * 127.98559 * 0.26681 * 9 8 6 35 35 H 1.08999 * 109.87810 * 120.70550 * 13 5 4 36 36 H 1.09001 * 109.88337 * 241.71424 * 13 5 4 37 37 H 1.00904 * 111.00286 * 210.41128 * 16 14 13 38 38 H 1.09003 * 109.47390 * 299.99541 * 17 16 14 39 39 H 1.09008 * 109.47129 * 60.00112 * 17 16 14 40 40 H 0.96997 * 120.00532 * 0.02562 * 20 18 17 41 41 H 0.96998 * 120.00326 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2433 0.7729 6 6 4.4477 -1.5622 1.5934 7 8 5.5155 -1.9117 1.1282 8 6 4.2693 -1.4873 3.0552 9 6 5.2536 -1.7939 3.9723 10 16 4.4994 -1.5318 5.4970 11 7 3.1121 -1.0916 4.9245 12 7 3.1415 -1.1164 3.6509 13 6 3.4673 -1.2739 -0.6965 14 6 2.0861 -0.8075 -1.2025 15 1 1.4478 -1.6626 -1.4246 16 7 2.2290 0.0528 -2.3846 17 6 2.2896 -0.7483 -3.6144 18 6 2.4352 0.1664 -4.8032 19 8 2.4843 1.3675 -4.6417 20 7 2.5121 -0.3502 -6.0456 21 6 2.6451 0.4820 -7.1271 22 1 2.6879 1.5515 -6.9833 23 6 2.7248 -0.0506 -8.4079 24 7 2.8519 0.7470 -9.4445 25 14 2.6501 -1.9005 -8.6565 26 1 1.2370 -2.3188 -8.8390 27 1 3.4352 -2.2702 -9.8616 28 1 3.2187 -2.5833 -7.4667 29 1 -0.3634 -1.0253 0.0696 30 1 -0.3634 0.5729 0.8532 31 1 -0.3633 0.4525 -0.9226 32 1 1.4524 -1.6787 1.3981 33 1 2.1515 -0.1810 2.0860 34 1 6.2652 -2.1183 3.7782 35 1 4.2425 -0.5994 -1.0601 36 1 3.6676 -2.2885 -1.0408 37 1 1.4830 0.7306 -2.4310 38 1 3.1449 -1.4223 -3.5673 39 1 1.3733 -1.3304 -3.7145 40 1 2.4732 -1.3108 -6.1747 41 1 2.9072 0.3752 -10.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502730884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:42 Heat of formation + Delta-G solvation = 23.665935 kcal Electronic energy + Delta-G solvation = -26348.008761 eV Core-core repulsion = 22391.337735 eV Total energy + Delta-G solvation = -3956.671026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58325 -40.03997 -38.62374 -37.95092 -34.89405 -33.88195 -32.71763 -32.52185 -31.65270 -29.43498 -27.55927 -26.77414 -26.45718 -24.41624 -23.48172 -21.80662 -20.88418 -20.43268 -19.37820 -19.01407 -18.28827 -17.15949 -16.77859 -16.48600 -16.18519 -15.74444 -15.37391 -15.23734 -14.90625 -14.69090 -14.34156 -13.80956 -13.73264 -13.44037 -13.25691 -13.01335 -12.90602 -12.56901 -12.52280 -12.45775 -12.22301 -12.05531 -11.71968 -11.42791 -11.24552 -11.13064 -10.83282 -10.59387 -10.55728 -10.53474 -10.49194 -10.37269 -9.97463 -9.57464 -8.90736 -8.62611 -8.26980 -8.17550 -6.31007 -3.82560 -0.42341 0.42660 1.01086 1.04502 2.56232 2.77798 3.03348 3.06755 3.15474 3.34677 3.73135 4.00561 4.10077 4.10879 4.22997 4.29700 4.50864 4.72538 4.81041 4.93217 5.06425 5.16840 5.23211 5.25093 5.42815 5.53223 5.57420 5.61725 5.73539 5.76870 5.86043 5.90603 5.94920 5.97126 6.11164 6.96900 7.03178 7.13412 7.49077 7.57926 7.71322 8.14275 8.59389 8.94837 9.42254 9.81986 10.82043 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.002062 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.061833 B =13572.636282 C =14152.426552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.099 0.901 4 C 0.105 3.895 5 N -0.596 5.596 6 C 0.614 3.386 7 O -0.524 6.524 8 C -0.016 4.016 9 C -0.236 4.236 10 S 0.463 5.537 11 N -0.292 5.292 12 N -0.208 5.208 13 C 0.114 3.886 14 C 0.078 3.922 15 H 0.063 0.937 16 N -0.656 5.656 17 C 0.046 3.954 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.209 0.791 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.357 0.643 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.371 0.629 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -9.643 30.822 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.117 0.883 4 C -0.018 4.018 5 N -0.328 5.328 6 C 0.397 3.603 7 O -0.399 6.399 8 C -0.163 4.163 9 C -0.393 4.393 10 S 0.599 5.401 11 N -0.272 5.272 12 N -0.079 5.079 13 C -0.009 4.009 14 C -0.033 4.033 15 H 0.081 0.919 16 N -0.290 5.290 17 C -0.087 4.087 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.226 0.774 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.203 0.797 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.434 -8.528 31.938 33.060 hybrid contribution -0.109 -2.091 -1.920 2.841 sum -0.543 -10.620 30.019 31.846 Atomic orbital electron populations 1.21729 0.93390 1.02255 1.02709 1.22622 0.96371 1.00413 0.93305 0.88304 1.22747 0.81879 0.98950 0.98256 1.48146 1.12358 1.64934 1.07375 1.16214 0.83241 0.78467 0.82331 1.90871 1.25484 1.48121 1.75470 1.22623 0.89811 1.06062 0.97831 1.28903 1.07282 1.05262 0.97834 1.81575 1.02148 1.44768 1.11643 1.78684 1.19477 1.22258 1.06797 1.71689 1.22404 1.13826 0.99948 1.22130 0.99076 1.02033 0.77621 1.22598 0.94422 0.95367 0.90888 0.91921 1.59979 1.53449 1.15907 0.99703 1.21800 1.01285 0.95634 0.89982 1.19664 0.84172 0.89158 0.83453 1.90570 1.53944 1.15162 1.84923 1.42208 1.66468 1.08046 1.06226 1.19430 1.47446 0.93367 0.83099 0.86265 1.25044 0.97624 0.98315 0.95219 1.69620 1.48874 1.34833 0.98759 0.86669 0.78867 0.85161 0.78686 1.19673 1.20165 1.19435 0.92346 0.91787 0.91771 0.90876 0.88169 0.77359 0.89151 0.91169 0.82128 0.89373 0.93476 0.79681 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.31 37.16 0.35 -0.78 16 2 C -0.11 -1.03 3.09 -88.35 -0.27 -1.30 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.10 1.00 5.56 -2.41 -0.01 0.99 16 5 N -0.60 -6.99 3.33 -171.63 -0.57 -7.56 16 6 C 0.61 7.75 7.84 -12.51 -0.10 7.65 16 7 O -0.52 -8.03 17.12 5.27 0.09 -7.94 16 8 C -0.02 -0.16 6.76 -83.78 -0.57 -0.73 16 9 C -0.24 -1.61 11.21 30.64 0.34 -1.27 16 10 S 0.46 2.29 23.38 -107.50 -2.51 -0.22 16 11 N -0.29 -2.54 12.49 60.35 0.75 -1.78 16 12 N -0.21 -2.08 8.51 32.74 0.28 -1.80 16 13 C 0.11 1.41 6.55 -3.06 -0.02 1.39 16 14 C 0.08 0.88 2.71 -65.88 -0.18 0.70 16 15 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 16 N -0.66 -9.58 5.92 -106.06 -0.63 -10.21 16 17 C 0.05 0.73 6.02 -4.98 -0.03 0.70 16 18 C 0.45 10.05 7.82 -10.98 -0.09 9.97 16 19 O -0.56 -14.97 15.78 5.55 0.09 -14.89 16 20 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 21 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 25 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 29 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.64 7.99 -51.93 -0.41 0.22 16 33 H 0.10 0.98 6.06 -51.93 -0.31 0.66 16 34 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.09 1.31 8.03 -51.93 -0.42 0.90 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.36 5.32 8.20 -39.29 -0.32 5.00 16 38 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.05 0.64 8.09 -51.92 -0.42 0.22 16 40 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -35.17 360.99 -6.92 -42.09 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.04 Total: 11.65 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -0.82 Total: 9.58 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.55 Total: -60.36 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.18 Total: -22.83 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.51 Total: -0.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.17 -6.92 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502730884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.760 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds