Wall clock time and date at job start Tue Mar 31 2020 23:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.88809 * 2 1 4 4 C 1.55134 * 110.90698 * 124.09302 * 2 1 3 5 5 N 1.47423 * 104.72186 * 155.27433 * 4 2 1 6 6 C 1.34779 * 125.65152 * 155.82033 * 5 4 2 7 7 O 1.21604 * 120.00182 * 179.68728 * 6 5 4 8 8 C 1.47450 * 119.99253 * 359.69256 * 6 5 4 9 9 C 1.37988 * 124.14677 * 179.97438 * 8 6 5 10 10 S 1.72108 * 104.02744 * 179.97438 * 9 8 6 11 11 N 1.56405 * 96.15666 * 0.02562 * 10 9 8 12 12 N 1.27414 * 109.87334 * 359.97438 * 11 10 9 13 13 C 1.47028 * 108.70156 * 335.55317 * 5 4 2 14 14 C 1.54322 * 107.27336 * 1.28864 * 13 5 4 15 15 H 1.08991 * 110.72047 * 263.64804 * 14 13 5 16 16 N 1.46896 * 110.71930 * 140.55218 * 14 13 5 17 17 C 1.46895 * 110.99970 * 86.45494 * 16 14 13 18 18 C 1.50704 * 109.47155 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00050 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99746 * 179.97438 * 18 17 16 21 21 C 1.37108 * 119.99850 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99423 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00050 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00265 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00048 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47669 * 89.99665 * 25 23 21 27 27 H 1.48504 * 109.47243 * 209.99728 * 25 23 21 28 28 H 1.48501 * 109.47353 * 329.99313 * 25 23 21 29 29 H 1.09000 * 109.47320 * 183.88458 * 1 2 3 30 30 H 1.09004 * 109.47166 * 303.87969 * 1 2 3 31 31 H 1.08995 * 109.47259 * 63.87678 * 1 2 3 32 32 H 1.09004 * 110.49165 * 36.43897 * 4 2 1 33 33 H 1.08995 * 110.34647 * 274.03968 * 4 2 1 34 34 H 1.07993 * 127.98559 * 0.26681 * 9 8 6 35 35 H 1.08999 * 109.87810 * 120.70550 * 13 5 4 36 36 H 1.09001 * 109.88337 * 241.71424 * 13 5 4 37 37 H 1.00904 * 111.00286 * 210.41128 * 16 14 13 38 38 H 1.09003 * 109.47390 * 299.99541 * 17 16 14 39 39 H 1.09008 * 109.47129 * 60.00112 * 17 16 14 40 40 H 0.96997 * 120.00532 * 0.02562 * 20 18 17 41 41 H 0.96998 * 120.00326 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2433 0.7729 6 6 4.4477 -1.5622 1.5934 7 8 5.5155 -1.9117 1.1282 8 6 4.2693 -1.4873 3.0552 9 6 5.2536 -1.7939 3.9723 10 16 4.4994 -1.5318 5.4970 11 7 3.1121 -1.0916 4.9245 12 7 3.1415 -1.1164 3.6509 13 6 3.4673 -1.2739 -0.6965 14 6 2.0861 -0.8075 -1.2025 15 1 1.4478 -1.6626 -1.4246 16 7 2.2290 0.0528 -2.3846 17 6 2.2896 -0.7483 -3.6144 18 6 2.4352 0.1664 -4.8032 19 8 2.4843 1.3675 -4.6417 20 7 2.5121 -0.3502 -6.0456 21 6 2.6451 0.4820 -7.1271 22 1 2.6879 1.5515 -6.9833 23 6 2.7248 -0.0506 -8.4079 24 7 2.8519 0.7470 -9.4445 25 14 2.6501 -1.9005 -8.6565 26 1 1.2370 -2.3188 -8.8390 27 1 3.4352 -2.2702 -9.8616 28 1 3.2187 -2.5833 -7.4667 29 1 -0.3634 -1.0253 0.0696 30 1 -0.3634 0.5729 0.8532 31 1 -0.3633 0.4525 -0.9226 32 1 1.4524 -1.6787 1.3981 33 1 2.1515 -0.1810 2.0860 34 1 6.2652 -2.1183 3.7782 35 1 4.2425 -0.5994 -1.0601 36 1 3.6676 -2.2885 -1.0408 37 1 1.4830 0.7306 -2.4310 38 1 3.1449 -1.4223 -3.5673 39 1 1.3733 -1.3304 -3.7145 40 1 2.4732 -1.3108 -6.1747 41 1 2.9072 0.3752 -10.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502730884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:42 Heat of formation + Delta-G solvation = -5.614953 kcal Electronic energy + Delta-G solvation = -26349.278476 eV Core-core repulsion = 22391.337735 eV Total energy + Delta-G solvation = -3957.940741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.26750 -40.92127 -40.23715 -39.08458 -36.26993 -35.64728 -33.78279 -33.53140 -33.18832 -30.42971 -28.52121 -27.75414 -27.40639 -25.90863 -24.54655 -22.65377 -21.62883 -21.33274 -21.17886 -20.23952 -19.75551 -18.11616 -17.73615 -17.28764 -17.22866 -16.96884 -16.75113 -16.26889 -16.11351 -15.83240 -15.57728 -14.99365 -14.93056 -14.76565 -14.40129 -14.21152 -14.00134 -13.85664 -13.62254 -13.34241 -13.21169 -13.06018 -12.95587 -12.75264 -12.41645 -12.24856 -12.02661 -11.97563 -11.58333 -11.50954 -11.44266 -11.19373 -11.14366 -10.89611 -10.43809 -10.24783 -9.82711 -9.42961 -8.41042 -6.01976 -0.95894 -0.07439 0.27605 0.52023 1.30961 1.35677 1.44890 1.72629 1.92602 1.95858 2.23292 2.61841 2.74496 3.15521 3.25575 3.43398 3.49503 3.63317 3.73175 4.06147 4.13146 4.19652 4.30967 4.32185 4.43710 4.52203 4.55105 4.68505 4.74501 4.85133 4.91467 5.01921 5.12614 5.24028 5.39405 5.53109 5.89987 6.02592 6.20055 6.34790 6.39942 6.59709 6.82303 6.88258 7.39913 7.96377 8.76555 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.002062 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.061833 B =13572.636282 C =14152.426552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.111 3.889 5 N -0.598 5.598 6 C 0.609 3.391 7 O -0.563 6.563 8 C -0.043 4.043 9 C -0.239 4.239 10 S 0.568 5.432 11 N -0.330 5.330 12 N -0.225 5.225 13 C 0.114 3.886 14 C 0.086 3.914 15 H 0.088 0.912 16 N -0.675 5.675 17 C 0.060 3.940 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.277 1.277 28 H -0.232 1.232 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.226 0.774 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.354 0.646 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.390 0.610 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -13.188 33.481 36.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.011 4.011 5 N -0.329 5.329 6 C 0.394 3.606 7 O -0.441 6.441 8 C -0.190 4.190 9 C -0.396 4.396 10 S 0.703 5.297 11 N -0.311 5.311 12 N -0.095 5.095 13 C -0.010 4.010 14 C -0.024 4.024 15 H 0.106 0.894 16 N -0.310 5.310 17 C -0.072 4.072 18 C 0.237 3.763 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.202 1.202 28 H -0.155 1.155 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.175 0.825 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.210 -12.077 34.637 36.702 hybrid contribution 0.204 -0.840 -2.548 2.690 sum -1.006 -12.917 32.090 34.607 Atomic orbital electron populations 1.21703 0.91645 1.03315 1.02888 1.22570 0.97656 0.99292 0.92513 0.89939 1.22809 0.80908 0.99412 0.97997 1.48254 1.13085 1.64482 1.07105 1.16593 0.82757 0.77691 0.83527 1.90832 1.26804 1.50023 1.76471 1.22379 0.91261 1.08542 0.96843 1.29267 1.07692 1.03822 0.98780 1.81208 0.98764 1.41238 1.08442 1.78354 1.22497 1.23719 1.06511 1.71716 1.22663 1.14552 1.00531 1.22069 0.98954 1.01594 0.78341 1.22617 0.94135 0.95801 0.89865 0.89406 1.59903 1.53976 1.16785 1.00299 1.21717 1.03988 0.94275 0.87192 1.20957 0.81238 0.89478 0.84629 1.90549 1.55313 1.18068 1.85886 1.42035 1.67198 1.08454 1.05582 1.19002 1.49666 0.91507 0.85533 0.92678 1.26132 0.96107 1.05345 0.93937 1.69805 1.49898 1.38180 0.99627 0.85360 0.79849 0.76479 0.79809 1.17921 1.20172 1.15520 0.90913 0.90849 0.92286 0.89356 0.88277 0.75743 0.92089 0.90629 0.82468 0.87285 0.89607 0.77452 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.31 71.98 0.67 -1.18 16 2 C -0.10 -1.79 3.09 -9.32 -0.03 -1.82 16 3 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.11 1.97 5.56 86.93 0.48 2.46 16 5 N -0.60 -13.73 3.33 -815.17 -2.71 -16.44 16 6 C 0.61 15.34 7.84 86.67 0.68 16.02 16 7 O -0.56 -17.53 17.12 -4.04 -0.07 -17.60 16 8 C -0.04 -0.82 6.76 41.36 0.28 -0.54 16 9 C -0.24 -2.83 11.21 67.76 0.76 -2.07 16 10 S 0.57 4.04 23.38 -56.49 -1.32 2.72 16 11 N -0.33 -5.12 12.49 37.02 0.46 -4.66 16 12 N -0.23 -4.23 8.51 -50.34 -0.43 -4.66 16 13 C 0.11 2.73 6.55 86.73 0.57 3.29 16 14 C 0.09 1.77 2.71 46.10 0.12 1.89 16 15 H 0.09 1.44 7.79 -2.39 -0.02 1.42 16 16 N -0.68 -19.01 5.92 -489.46 -2.90 -21.91 16 17 C 0.06 1.78 6.02 85.56 0.52 2.30 16 18 C 0.45 20.09 7.82 87.66 0.69 20.78 16 19 O -0.61 -33.94 15.78 -3.06 -0.05 -33.99 16 20 N -0.59 -27.81 5.09 -306.98 -1.56 -29.37 16 21 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.84 16 23 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 24 N -0.93 -56.70 13.96 21.66 0.30 -56.39 16 25 Si 0.97 38.91 27.74 68.60 1.90 40.81 16 26 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 29 H 0.07 0.79 8.07 -2.39 -0.02 0.77 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.33 7.99 -2.39 -0.02 1.31 16 33 H 0.10 1.85 6.06 -2.39 -0.01 1.83 16 34 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.35 10.40 8.20 -89.69 -0.74 9.66 16 38 H 0.11 2.83 8.13 -2.39 -0.02 2.82 16 39 H 0.09 1.95 8.09 -2.38 -0.02 1.93 16 40 H 0.39 15.12 5.76 -92.71 -0.53 14.59 16 41 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -83.83 360.99 -0.54 -84.37 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.23 Total: 34.88 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.06 Total: 22.22 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -6.83 Total: -133.42 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.12 Total: -51.59 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.32 Total: 2.72 kcal Total: -83.83 -0.54 -84.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502730884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.759 kcal (2) G-P(sol) polarization free energy of solvation -83.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds