Wall clock time and date at job start Tue Mar 31 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48494 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46914 * 300.00338 * 3 2 1 6 6 H 1.48506 * 109.47018 * 60.00320 * 3 2 1 7 7 C 1.38954 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99271 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99990 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99681 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99981 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47057 * 179.97438 * 12 10 9 14 14 C 1.46901 * 111.00152 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47470 * 179.97438 * 14 13 12 16 16 C 1.53779 * 113.61633 * 175.00464 * 15 14 13 17 17 C 1.53772 * 87.08207 * 139.98402 * 16 15 14 18 18 N 1.46499 * 113.61767 * 89.11232 * 17 16 15 19 19 C 1.34782 * 119.99988 * 156.52485 * 18 17 16 20 20 O 1.21602 * 119.99872 * 0.02562 * 19 18 17 21 21 C 1.47448 * 120.00140 * 180.02562 * 19 18 17 22 22 C 1.37974 * 124.15798 * 180.02562 * 21 19 18 23 23 S 1.72101 * 104.03589 * 179.97438 * 22 21 19 24 24 N 1.56401 * 96.15383 * 0.02562 * 23 22 21 25 25 N 1.27414 * 109.87608 * 359.97438 * 24 23 22 26 26 C 1.53784 * 87.17392 * 334.52364 * 17 16 15 27 27 H 0.97000 * 119.99834 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00122 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47241 * 59.99440 * 12 10 9 30 30 H 1.09007 * 109.46640 * 299.99814 * 12 10 9 31 31 H 1.00899 * 111.00377 * 303.95192 * 13 12 10 32 32 H 1.09005 * 109.46480 * 60.00161 * 14 13 12 33 33 H 1.08996 * 109.47239 * 300.00246 * 14 13 12 34 34 H 1.09004 * 112.84856 * 43.80865 * 15 14 13 35 35 H 1.08998 * 113.61372 * 25.42807 * 16 15 14 36 36 H 1.09000 * 113.61083 * 254.53137 * 16 15 14 37 37 H 1.08997 * 113.61641 * 219.93772 * 17 16 15 38 38 H 0.97001 * 120.00482 * 336.53791 * 18 17 16 39 39 H 1.08001 * 127.98142 * 0.02562 * 22 21 19 40 40 H 1.09000 * 113.61290 * 140.02601 * 26 17 16 41 41 H 1.09001 * 113.61405 * 270.92741 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0034 13 7 2.1983 -5.9795 -0.0036 14 6 1.4980 -7.2709 -0.0047 15 6 2.5229 -8.4069 -0.0056 16 6 1.8933 -9.8046 0.1159 17 6 2.9319 -10.2760 -0.9154 18 7 4.1880 -10.7339 -0.3163 19 6 4.9836 -11.5884 -0.9897 20 8 4.6591 -11.9788 -2.0946 21 6 6.2475 -12.0497 -0.3865 22 6 7.1250 -12.9213 -0.9981 23 16 8.3999 -13.1001 0.1442 24 7 7.7923 -12.1459 1.2242 25 7 6.6813 -11.6772 0.8125 26 6 2.9821 -8.8228 -1.4160 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0016 29 1 0.6180 -4.9201 -0.8940 30 1 0.6161 -4.9213 0.8860 31 1 2.8338 -5.9119 -0.7844 32 1 0.8735 -7.3447 -0.8951 33 1 0.8727 -7.3459 0.8849 34 1 3.3446 -8.2362 0.6900 35 1 0.8660 -9.8537 -0.2450 36 1 2.0192 -10.2561 1.1000 37 1 2.5325 -10.9767 -1.6485 38 1 4.4469 -10.4224 0.5650 39 1 7.0335 -13.3838 -1.9697 40 1 3.9864 -8.4822 -1.6679 41 1 2.2519 -8.6039 -2.1952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505509433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:55 Heat of formation + Delta-G solvation = 23.442515 kcal Electronic energy + Delta-G solvation = -25231.537928 eV Core-core repulsion = 21274.857214 eV Total energy + Delta-G solvation = -3956.680714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59222 -40.30289 -38.71475 -38.12157 -35.25804 -33.90145 -33.42585 -32.50436 -31.19750 -28.67548 -27.57988 -26.03065 -25.71252 -24.51013 -23.48807 -21.97783 -21.38615 -19.86775 -19.55191 -19.08967 -17.86463 -17.21400 -16.64847 -16.48323 -16.16484 -15.90286 -15.52818 -15.25203 -14.90691 -14.56948 -14.40337 -14.04169 -13.96445 -13.61795 -13.14757 -13.06428 -12.96544 -12.65392 -12.57262 -12.30530 -11.73959 -11.55298 -11.48638 -11.08725 -11.00203 -10.88435 -10.67260 -10.61233 -10.59850 -10.44411 -10.33152 -10.29646 -10.20034 -9.50319 -9.40872 -8.43384 -8.02038 -7.93584 -6.40171 -3.80777 -0.45739 0.39358 0.94534 1.01709 2.61759 2.68090 3.17589 3.27956 3.32398 3.35537 3.93219 4.07578 4.16016 4.24457 4.26215 4.39225 4.53238 4.63566 4.79975 4.82954 5.15724 5.26923 5.31895 5.44565 5.47365 5.52128 5.59610 5.70385 5.80766 5.86341 5.97965 6.00838 6.03043 6.28153 6.35624 6.84976 7.13955 7.27294 7.57086 7.66079 7.71563 8.08636 8.63391 9.19878 9.56489 10.08132 10.77707 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.001657 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.904541 B =16895.232265 C =17927.172969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.069 3.931 15 C -0.107 4.107 16 C -0.138 4.138 17 C 0.118 3.882 18 N -0.689 5.689 19 C 0.609 3.391 20 O -0.524 6.524 21 C -0.024 4.024 22 C -0.237 4.237 23 S 0.466 5.534 24 N -0.286 5.286 25 N -0.209 5.209 26 C -0.150 4.150 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.349 0.651 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.413 0.587 39 H 0.209 0.791 40 H 0.074 0.926 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 -29.913 -1.645 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.301 5.301 14 C -0.061 4.061 15 C -0.125 4.125 16 C -0.177 4.177 17 C 0.013 3.987 18 N -0.340 5.340 19 C 0.390 3.610 20 O -0.399 6.399 21 C -0.171 4.171 22 C -0.394 4.394 23 S 0.602 5.398 24 N -0.267 5.267 25 N -0.080 5.080 26 C -0.188 4.188 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.250 0.750 39 H 0.226 0.774 40 H 0.093 0.907 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.138 -29.891 -0.225 31.564 hybrid contribution -1.592 1.178 -1.587 2.538 sum 8.546 -28.713 -1.812 30.013 Atomic orbital electron populations 1.69626 1.05925 1.28008 1.50813 1.25268 0.95647 0.99722 0.97402 0.85796 0.79715 0.81135 0.77676 1.19226 1.20798 1.20747 1.19758 0.93406 0.82251 1.47364 0.87882 1.41876 1.09196 1.04619 1.64478 1.19843 0.88397 0.84762 0.84353 1.90521 1.13796 1.87086 1.55305 1.21671 0.94404 0.91052 1.01116 1.60067 1.18800 0.99945 1.51296 1.21945 0.95064 0.88753 1.00315 1.22701 0.99065 0.93243 0.97541 1.23335 0.98801 0.96099 0.99417 1.21934 0.83700 0.96307 0.96778 1.45511 1.21271 1.45651 1.21555 1.16606 0.81104 0.78865 0.84460 1.90850 1.72665 1.57533 1.18880 1.22658 1.00383 1.01668 0.92392 1.28912 0.98961 1.02824 1.08672 1.81624 1.21945 1.35558 1.00712 1.78673 1.08603 1.14389 1.25030 1.71545 1.05331 1.19280 1.11827 1.23584 1.02814 0.94999 0.97427 0.91958 0.77469 0.93981 0.89642 0.83210 0.95376 0.90986 0.88042 0.88390 0.90566 0.87743 0.75047 0.77363 0.90748 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 10 C 0.44 10.60 7.82 -10.98 -0.09 10.52 16 11 O -0.58 -16.15 15.78 5.55 0.09 -16.06 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.85 6.13 -115.06 -0.70 -11.56 16 14 C 0.07 0.81 5.52 -3.82 -0.02 0.79 16 15 C -0.11 -1.05 3.79 -89.67 -0.34 -1.39 16 16 C -0.14 -1.04 7.38 -25.92 -0.19 -1.23 16 17 C 0.12 1.03 4.29 -67.12 -0.29 0.74 16 18 N -0.69 -6.28 5.26 -54.09 -0.28 -6.57 16 19 C 0.61 6.33 7.81 -12.51 -0.10 6.23 16 20 O -0.52 -6.68 16.42 5.28 0.09 -6.59 16 21 C -0.02 -0.21 6.87 -83.78 -0.58 -0.79 16 22 C -0.24 -1.44 11.21 30.64 0.34 -1.09 16 23 S 0.47 2.23 23.38 -107.50 -2.51 -0.28 16 24 N -0.29 -2.56 12.49 60.35 0.75 -1.81 16 25 N -0.21 -2.07 11.24 32.74 0.37 -1.70 16 26 C -0.15 -1.44 7.45 -25.78 -0.19 -1.63 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.35 5.92 8.43 -39.29 -0.33 5.59 16 32 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.96 7.50 -51.93 -0.39 0.57 16 38 H 0.41 3.46 8.29 -40.82 -0.34 3.12 16 39 H 0.21 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -34.59 371.73 -7.77 -42.37 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.09 Total: 14.07 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.72 Total: 4.90 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.80 Total: -60.27 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.59 -7.77 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505509433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.808 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds