Wall clock time and date at job start Tue Mar 31 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48494 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46914 * 300.00338 * 3 2 1 6 6 H 1.48506 * 109.47018 * 60.00320 * 3 2 1 7 7 C 1.38954 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99271 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99990 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99681 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99981 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47057 * 179.97438 * 12 10 9 14 14 C 1.46901 * 111.00152 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47470 * 179.97438 * 14 13 12 16 16 C 1.53779 * 113.61633 * 175.00464 * 15 14 13 17 17 C 1.53772 * 87.08207 * 139.98402 * 16 15 14 18 18 N 1.46499 * 113.61767 * 89.11232 * 17 16 15 19 19 C 1.34782 * 119.99988 * 156.52485 * 18 17 16 20 20 O 1.21602 * 119.99872 * 0.02562 * 19 18 17 21 21 C 1.47448 * 120.00140 * 180.02562 * 19 18 17 22 22 C 1.37974 * 124.15798 * 180.02562 * 21 19 18 23 23 S 1.72101 * 104.03589 * 179.97438 * 22 21 19 24 24 N 1.56401 * 96.15383 * 0.02562 * 23 22 21 25 25 N 1.27414 * 109.87608 * 359.97438 * 24 23 22 26 26 C 1.53784 * 87.17392 * 334.52364 * 17 16 15 27 27 H 0.97000 * 119.99834 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00122 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47241 * 59.99440 * 12 10 9 30 30 H 1.09007 * 109.46640 * 299.99814 * 12 10 9 31 31 H 1.00899 * 111.00377 * 303.95192 * 13 12 10 32 32 H 1.09005 * 109.46480 * 60.00161 * 14 13 12 33 33 H 1.08996 * 109.47239 * 300.00246 * 14 13 12 34 34 H 1.09004 * 112.84856 * 43.80865 * 15 14 13 35 35 H 1.08998 * 113.61372 * 25.42807 * 16 15 14 36 36 H 1.09000 * 113.61083 * 254.53137 * 16 15 14 37 37 H 1.08997 * 113.61641 * 219.93772 * 17 16 15 38 38 H 0.97001 * 120.00482 * 336.53791 * 18 17 16 39 39 H 1.08001 * 127.98142 * 0.02562 * 22 21 19 40 40 H 1.09000 * 113.61290 * 140.02601 * 26 17 16 41 41 H 1.09001 * 113.61405 * 270.92741 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0034 13 7 2.1983 -5.9795 -0.0036 14 6 1.4980 -7.2709 -0.0047 15 6 2.5229 -8.4069 -0.0056 16 6 1.8933 -9.8046 0.1159 17 6 2.9319 -10.2760 -0.9154 18 7 4.1880 -10.7339 -0.3163 19 6 4.9836 -11.5884 -0.9897 20 8 4.6591 -11.9788 -2.0946 21 6 6.2475 -12.0497 -0.3865 22 6 7.1250 -12.9213 -0.9981 23 16 8.3999 -13.1001 0.1442 24 7 7.7923 -12.1459 1.2242 25 7 6.6813 -11.6772 0.8125 26 6 2.9821 -8.8228 -1.4160 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0016 29 1 0.6180 -4.9201 -0.8940 30 1 0.6161 -4.9213 0.8860 31 1 2.8338 -5.9119 -0.7844 32 1 0.8735 -7.3447 -0.8951 33 1 0.8727 -7.3459 0.8849 34 1 3.3446 -8.2362 0.6900 35 1 0.8660 -9.8537 -0.2450 36 1 2.0192 -10.2561 1.1000 37 1 2.5325 -10.9767 -1.6485 38 1 4.4469 -10.4224 0.5650 39 1 7.0335 -13.3838 -1.9697 40 1 3.9864 -8.4822 -1.6679 41 1 2.2519 -8.6039 -2.1952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505509433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:55 Heat of formation + Delta-G solvation = -4.932344 kcal Electronic energy + Delta-G solvation = -25232.768354 eV Core-core repulsion = 21274.857214 eV Total energy + Delta-G solvation = -3957.911141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22055 -41.04038 -40.15098 -39.38846 -36.56102 -35.79204 -34.35778 -33.27485 -33.10169 -29.86462 -28.24091 -27.31273 -26.65152 -25.70107 -24.67280 -22.87243 -22.00389 -21.14021 -20.50155 -20.18459 -19.87077 -17.97256 -17.74448 -17.27350 -17.11391 -17.00481 -16.56424 -16.43072 -16.12066 -15.79378 -15.70224 -15.39033 -15.11326 -14.94222 -14.36987 -14.16844 -13.70961 -13.69485 -13.51543 -13.34576 -13.11564 -13.04491 -12.84690 -12.59015 -12.41747 -12.12464 -11.89186 -11.52987 -11.52402 -11.46857 -11.28633 -11.20474 -11.08014 -10.93512 -10.35177 -10.15864 -10.02236 -9.28693 -8.47632 -5.96368 -0.96472 -0.06996 0.26942 0.51003 1.35966 1.41158 1.55560 1.92409 1.97398 2.04500 2.28775 2.70527 2.93922 3.19576 3.49215 3.53117 3.61014 3.75291 3.80114 3.89591 3.98083 4.32876 4.33399 4.45427 4.49997 4.55901 4.67740 4.77347 4.82579 4.86072 4.90995 5.07371 5.18108 5.22276 5.40330 5.58270 5.91035 6.14303 6.17941 6.43729 6.50034 6.59630 6.92105 7.11961 7.55531 8.11162 8.69971 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.001657 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.904541 B =16895.232265 C =17927.172969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.686 5.686 14 C 0.071 3.929 15 C -0.106 4.106 16 C -0.119 4.119 17 C 0.117 3.883 18 N -0.686 5.686 19 C 0.607 3.393 20 O -0.554 6.554 21 C -0.048 4.048 22 C -0.236 4.236 23 S 0.562 5.438 24 N -0.334 5.334 25 N -0.234 5.234 26 C -0.150 4.150 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.341 0.659 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.230 0.770 40 H 0.054 0.946 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -31.099 -1.750 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.512 6.512 12 C -0.068 4.068 13 N -0.318 5.318 14 C -0.058 4.058 15 C -0.125 4.125 16 C -0.157 4.157 17 C 0.012 3.988 18 N -0.336 5.336 19 C 0.389 3.611 20 O -0.432 6.432 21 C -0.196 4.196 22 C -0.393 4.393 23 S 0.697 5.303 24 N -0.314 5.314 25 N -0.104 5.104 26 C -0.188 4.188 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.253 0.747 39 H 0.247 0.753 40 H 0.073 0.927 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.753 -31.084 -0.300 32.579 hybrid contribution -1.375 1.435 -1.583 2.541 sum 8.378 -29.648 -1.883 30.867 Atomic orbital electron populations 1.69679 1.06783 1.29247 1.50340 1.26050 0.96583 1.02409 0.96268 0.84862 0.77964 0.77066 0.78380 1.19921 1.19501 1.19529 1.19701 0.92678 0.84107 1.49925 0.90460 1.41942 1.09345 1.04710 1.65060 1.20964 0.88271 0.86294 0.82111 1.90488 1.16005 1.88010 1.56685 1.21540 0.94052 0.88091 1.03069 1.60088 1.19159 1.01257 1.51275 1.22058 0.95440 0.86839 1.01442 1.22622 0.98571 0.93970 0.97318 1.23277 0.99153 0.93676 0.99593 1.21953 0.83940 0.95597 0.97272 1.45552 1.21302 1.45168 1.21546 1.16821 0.81536 0.78600 0.84130 1.90819 1.73545 1.58781 1.20039 1.22578 1.00680 1.03304 0.93031 1.29301 0.98804 1.01516 1.09653 1.81236 1.19051 1.32116 0.97850 1.78335 1.09010 1.16502 1.27586 1.71571 1.06080 1.20313 1.12409 1.23597 1.01967 0.95660 0.97617 0.91273 0.76916 0.91591 0.87735 0.84070 0.93746 0.90066 0.89554 0.86494 0.89610 0.87914 0.74698 0.75319 0.92697 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.98 13.05 21.67 0.28 -49.69 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.93 5.29 -306.98 -1.62 -31.55 16 10 C 0.44 21.21 7.82 87.66 0.69 21.90 16 11 O -0.63 -35.66 15.78 -3.05 -0.05 -35.70 16 12 C 0.06 2.24 6.17 85.56 0.53 2.77 16 13 N -0.69 -21.75 6.13 -517.93 -3.17 -24.92 16 14 C 0.07 1.53 5.52 86.30 0.48 2.00 16 15 C -0.11 -1.98 3.79 -10.18 -0.04 -2.02 16 16 C -0.12 -1.56 7.38 31.12 0.23 -1.33 16 17 C 0.12 1.96 4.29 45.52 0.20 2.16 16 18 N -0.69 -12.59 5.26 -443.29 -2.33 -14.92 16 19 C 0.61 12.78 7.81 86.67 0.68 13.46 16 20 O -0.55 -14.22 16.42 -4.04 -0.07 -14.29 16 21 C -0.05 -0.86 6.87 41.36 0.28 -0.58 16 22 C -0.24 -2.56 11.21 67.76 0.76 -1.80 16 23 S 0.56 4.37 23.38 -56.49 -1.32 3.05 16 24 N -0.33 -5.80 12.49 37.02 0.46 -5.33 16 25 N -0.23 -4.68 11.24 -50.35 -0.57 -5.24 16 26 C -0.15 -2.82 7.45 31.21 0.23 -2.58 16 27 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.40 19.55 7.90 -92.70 -0.73 18.82 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 31 H 0.34 11.64 8.43 -89.69 -0.76 10.88 16 32 H 0.04 0.84 7.85 -2.38 -0.02 0.83 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.12 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.81 7.50 -2.39 -0.02 1.79 16 38 H 0.42 7.13 8.29 -92.71 -0.77 6.36 16 39 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.71 7.90 -2.39 -0.02 1.69 16 Total: -1.00 -76.54 371.73 -2.19 -78.73 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -1.14 Total: 39.17 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 5.31 Total: 15.19 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -6.95 Total: -131.66 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.11 Total: -49.99 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.32 Total: 3.05 kcal Total: -76.54 -2.19 -78.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505509433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.794 kcal (2) G-P(sol) polarization free energy of solvation -76.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds