Wall clock time and date at job start Tue Mar 31 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81500 * 2 1 4 4 N 1.28511 * 109.43807 * 180.27488 * 3 2 1 5 5 N 1.28711 * 110.64096 * 359.72390 * 4 3 2 6 6 H 0.96993 * 126.03903 * 179.97438 * 5 4 3 7 7 C 1.37001 * 126.81254 * 179.81629 * 2 1 3 8 8 C 1.47236 * 127.19060 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99759 * 359.43670 * 8 7 2 10 10 N 1.34777 * 119.99872 * 179.71093 * 8 7 2 11 11 C 1.46503 * 119.99611 * 174.99672 * 10 8 7 12 12 C 1.53007 * 115.54947 * 279.61498 * 11 10 8 13 13 N 1.46501 * 109.47023 * 324.96377 * 12 11 10 14 14 C 1.34770 * 119.99993 * 174.90611 * 13 12 11 15 15 O 1.21290 * 119.99719 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00190 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47217 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00019 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00027 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99858 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47508 * 359.97438 * 22 20 18 24 24 H 1.48511 * 109.47243 * 119.99651 * 22 20 18 25 25 H 1.48498 * 109.47133 * 239.99528 * 22 20 18 26 26 C 1.52996 * 117.49772 * 133.90852 * 11 10 8 27 27 C 1.52998 * 117.50118 * 65.28539 * 11 10 8 28 28 H 1.09000 * 109.47310 * 270.18620 * 1 2 3 29 29 H 1.09004 * 109.47038 * 30.18434 * 1 2 3 30 30 H 1.08996 * 109.47251 * 150.18283 * 1 2 3 31 31 H 0.96996 * 120.00515 * 354.99686 * 10 8 7 32 32 H 1.08998 * 109.46891 * 84.96096 * 12 11 10 33 33 H 1.08995 * 109.47115 * 204.96503 * 12 11 10 34 34 H 0.97001 * 120.00197 * 354.91166 * 13 12 11 35 35 H 1.08998 * 109.47147 * 299.99688 * 16 14 13 36 36 H 1.08999 * 109.46860 * 60.00529 * 16 14 13 37 37 H 0.97008 * 119.99591 * 180.02562 * 21 20 18 38 38 H 1.09004 * 117.50211 * 359.97438 * 26 11 10 39 39 H 1.09003 * 117.49790 * 145.02086 * 26 11 10 40 40 H 1.09000 * 117.50227 * 214.97862 * 27 11 10 41 41 H 1.09004 * 117.49554 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5324 0.6835 -0.0058 5 7 3.6057 -0.6015 -0.0040 6 1 4.4212 -1.1266 -0.0077 7 6 2.3280 -1.0968 0.0035 8 6 1.9222 -2.5122 0.0075 9 8 0.7422 -2.8064 0.0183 10 7 2.8585 -3.4816 0.0048 11 6 2.4587 -4.8864 0.1195 12 6 2.1488 -5.3707 1.5374 13 7 3.0417 -4.7028 2.4876 14 6 2.8831 -4.8967 3.8118 15 8 2.0015 -5.6246 4.2168 16 6 3.8012 -4.2093 4.7893 17 16 3.3362 -4.6665 6.4778 18 6 4.5370 -3.7498 7.3847 19 1 5.2617 -3.1435 6.8616 20 6 4.5523 -3.8078 8.7714 21 7 3.6694 -4.5472 9.4089 22 14 5.8248 -2.8354 9.7328 23 1 6.6953 -2.0899 8.7885 24 1 5.1374 -1.8768 10.6350 25 1 6.6538 -3.7668 10.5394 26 6 3.1034 -5.8852 -0.8436 27 6 1.6385 -5.4832 -1.0259 28 1 -0.3634 0.0033 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5110 31 1 3.7970 -3.2493 -0.0730 32 1 1.1137 -5.1344 1.7839 33 1 2.2988 -6.4488 1.5940 34 1 3.7470 -4.1209 2.1637 35 1 4.8297 -4.5164 4.5995 36 1 3.7165 -3.1292 4.6694 37 1 3.6799 -4.5874 10.3781 38 1 3.8248 -5.4971 -1.5628 39 1 3.3071 -6.8876 -0.4671 40 1 0.8784 -6.2211 -0.7695 41 1 1.3960 -4.8305 -1.8646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505953832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:12 Heat of formation + Delta-G solvation = 50.850345 kcal Electronic energy + Delta-G solvation = -26460.364707 eV Core-core repulsion = 22504.872485 eV Total energy + Delta-G solvation = -3955.492222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.79460 -40.60389 -39.10948 -37.79291 -34.69998 -34.08252 -33.50757 -32.46774 -32.46177 -29.86516 -28.28609 -26.55305 -25.46487 -24.90249 -23.29763 -22.95119 -21.34553 -20.46183 -20.32789 -19.45341 -18.05028 -17.33522 -16.94624 -16.80036 -16.41411 -15.73862 -15.48537 -15.11094 -14.99058 -14.83650 -14.41027 -14.15001 -13.94689 -13.48351 -13.36289 -13.30347 -13.03943 -12.86532 -12.60140 -12.25649 -12.05080 -11.89353 -11.58056 -11.46276 -11.09811 -11.06056 -10.96699 -10.81469 -10.78498 -10.43060 -9.91777 -9.83090 -9.63692 -9.47905 -9.11480 -8.98331 -8.28124 -6.54324 -6.25320 -3.96314 0.42518 1.86506 1.93963 2.22135 2.58458 2.90739 3.00407 3.13954 3.19105 3.26114 3.30158 3.62369 3.78987 4.03322 4.16583 4.17979 4.30364 4.35949 4.49128 4.61674 4.96236 5.08275 5.10099 5.13248 5.30541 5.36142 5.41419 5.44086 5.53714 5.56715 5.60299 5.69774 5.80320 5.86025 5.96196 6.04440 6.10600 6.46844 6.69927 7.48470 7.55306 7.57224 7.84860 8.31407 8.51161 9.20148 10.82135 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.002957 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.739659 B = 9465.551836 C =11183.561854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.069 3.931 3 N -0.268 5.268 4 N -0.038 5.038 5 N -0.375 5.375 6 H 0.450 0.550 7 C -0.077 4.077 8 C 0.603 3.397 9 O -0.492 6.492 10 N -0.699 5.699 11 C 0.082 3.918 12 C 0.153 3.847 13 N -0.735 5.735 14 C 0.532 3.468 15 O -0.513 6.513 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.166 4.166 27 C -0.147 4.147 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.397 0.603 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.392 0.608 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 2.383 -26.540 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 N -0.135 5.135 4 N -0.020 5.020 5 N -0.103 5.103 6 H 0.296 0.704 7 C -0.211 4.211 8 C 0.387 3.613 9 O -0.363 6.363 10 N -0.351 5.351 11 C -0.005 4.005 12 C 0.028 3.972 13 N -0.389 5.389 14 C 0.318 3.682 15 O -0.387 6.387 16 C -0.303 4.303 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.204 4.204 27 C -0.186 4.186 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.232 0.768 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.361 2.247 -25.656 25.790 hybrid contribution 2.911 0.655 0.011 2.984 sum 1.550 2.902 -25.645 25.855 Atomic orbital electron populations 1.20370 0.84629 1.04429 1.04282 1.22397 0.98760 0.86848 0.99121 1.75004 0.95103 1.25865 1.17483 1.78227 1.16099 0.92081 1.15584 1.45453 1.08649 1.07099 1.49076 0.70385 1.22007 0.85151 0.96233 1.17676 1.16689 0.86015 0.81925 0.76679 1.90874 1.16225 1.81596 1.47582 1.45109 1.09127 1.05014 1.75872 1.20886 1.07184 0.79910 0.92498 1.21029 0.95510 0.96922 0.83747 1.45825 1.35930 1.51311 1.05875 1.20315 0.84789 0.81231 0.81900 1.90720 1.33190 1.36782 1.77962 1.23519 1.01348 1.02959 1.02522 1.85430 1.44860 1.63067 0.89716 1.22895 1.18534 1.33240 0.93818 0.90944 1.24991 0.96370 0.95514 0.96669 1.70026 1.33895 1.37404 1.08840 0.86116 0.80427 0.79423 0.79522 1.19654 1.20496 1.20520 1.23522 0.96843 0.99292 1.00716 1.23261 0.94364 1.02507 0.98423 0.89492 0.90117 0.88751 0.76832 0.90092 0.90273 0.77454 0.89286 0.89510 0.92181 0.88053 0.86969 0.87177 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.93 36.01 0.36 -0.35 16 2 C 0.07 0.74 7.30 -82.39 -0.60 0.13 16 3 N -0.27 -3.23 12.35 33.51 0.41 -2.81 16 4 N -0.04 -0.40 13.35 60.35 0.81 0.40 16 5 N -0.38 -2.64 6.98 33.31 0.23 -2.41 16 6 H 0.45 1.16 8.33 -190.34 -1.59 -0.42 16 7 C -0.08 -0.70 7.17 -82.33 -0.59 -1.29 16 8 C 0.60 5.50 7.74 -12.60 -0.10 5.40 16 9 O -0.49 -5.98 14.57 5.26 0.08 -5.90 16 10 N -0.70 -4.29 4.39 -48.73 -0.21 -4.51 16 11 C 0.08 0.59 2.01 -131.82 -0.27 0.33 16 12 C 0.15 1.66 5.90 -4.04 -0.02 1.63 16 13 N -0.73 -9.06 5.40 -60.29 -0.33 -9.38 16 14 C 0.53 9.63 7.85 -10.99 -0.09 9.54 16 15 O -0.51 -11.46 15.86 5.55 0.09 -11.37 16 16 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 22 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.17 -0.79 10.10 -26.73 -0.27 -1.06 16 27 C -0.15 -0.94 9.56 -26.73 -0.26 -1.20 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.85 6.62 -51.93 -0.34 0.51 16 31 H 0.40 1.11 8.11 -40.82 -0.33 0.78 16 32 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 33 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 34 H 0.39 3.61 7.76 -40.82 -0.32 3.30 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 0.50 8.05 -51.93 -0.42 0.08 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -38.45 374.27 -7.53 -45.98 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.33 Total: -0.34 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.41 Total: -2.55 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.65 Total: -44.00 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.16 Total: -17.27 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.45 -7.53 -45.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505953832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.827 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds