Wall clock time and date at job start Tue Mar 31 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81500 * 2 1 4 4 N 1.28511 * 109.43807 * 180.27488 * 3 2 1 5 5 N 1.28711 * 110.64096 * 359.72390 * 4 3 2 6 6 H 0.96993 * 126.03903 * 179.97438 * 5 4 3 7 7 C 1.37001 * 126.81254 * 179.81629 * 2 1 3 8 8 C 1.47236 * 127.19060 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99759 * 359.43670 * 8 7 2 10 10 N 1.34777 * 119.99872 * 179.71093 * 8 7 2 11 11 C 1.46503 * 119.99611 * 174.99672 * 10 8 7 12 12 C 1.53007 * 115.54947 * 279.61498 * 11 10 8 13 13 N 1.46501 * 109.47023 * 324.96377 * 12 11 10 14 14 C 1.34770 * 119.99993 * 174.90611 * 13 12 11 15 15 O 1.21290 * 119.99719 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00190 * 180.02562 * 14 13 12 17 17 S 1.81006 * 109.47217 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00019 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00027 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99858 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99889 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47508 * 359.97438 * 22 20 18 24 24 H 1.48511 * 109.47243 * 119.99651 * 22 20 18 25 25 H 1.48498 * 109.47133 * 239.99528 * 22 20 18 26 26 C 1.52996 * 117.49772 * 133.90852 * 11 10 8 27 27 C 1.52998 * 117.50118 * 65.28539 * 11 10 8 28 28 H 1.09000 * 109.47310 * 270.18620 * 1 2 3 29 29 H 1.09004 * 109.47038 * 30.18434 * 1 2 3 30 30 H 1.08996 * 109.47251 * 150.18283 * 1 2 3 31 31 H 0.96996 * 120.00515 * 354.99686 * 10 8 7 32 32 H 1.08998 * 109.46891 * 84.96096 * 12 11 10 33 33 H 1.08995 * 109.47115 * 204.96503 * 12 11 10 34 34 H 0.97001 * 120.00197 * 354.91166 * 13 12 11 35 35 H 1.08998 * 109.47147 * 299.99688 * 16 14 13 36 36 H 1.08999 * 109.46860 * 60.00529 * 16 14 13 37 37 H 0.97008 * 119.99591 * 180.02562 * 21 20 18 38 38 H 1.09004 * 117.50211 * 359.97438 * 26 11 10 39 39 H 1.09003 * 117.49790 * 145.02086 * 26 11 10 40 40 H 1.09000 * 117.50227 * 214.97862 * 27 11 10 41 41 H 1.09004 * 117.49554 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5324 0.6835 -0.0058 5 7 3.6057 -0.6015 -0.0040 6 1 4.4212 -1.1266 -0.0077 7 6 2.3280 -1.0968 0.0035 8 6 1.9222 -2.5122 0.0075 9 8 0.7422 -2.8064 0.0183 10 7 2.8585 -3.4816 0.0048 11 6 2.4587 -4.8864 0.1195 12 6 2.1488 -5.3707 1.5374 13 7 3.0417 -4.7028 2.4876 14 6 2.8831 -4.8967 3.8118 15 8 2.0015 -5.6246 4.2168 16 6 3.8012 -4.2093 4.7893 17 16 3.3362 -4.6665 6.4778 18 6 4.5370 -3.7498 7.3847 19 1 5.2617 -3.1435 6.8616 20 6 4.5523 -3.8078 8.7714 21 7 3.6694 -4.5472 9.4089 22 14 5.8248 -2.8354 9.7328 23 1 6.6953 -2.0899 8.7885 24 1 5.1374 -1.8768 10.6350 25 1 6.6538 -3.7668 10.5394 26 6 3.1034 -5.8852 -0.8436 27 6 1.6385 -5.4832 -1.0259 28 1 -0.3634 0.0033 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5110 31 1 3.7970 -3.2493 -0.0730 32 1 1.1137 -5.1344 1.7839 33 1 2.2988 -6.4488 1.5940 34 1 3.7470 -4.1209 2.1637 35 1 4.8297 -4.5164 4.5995 36 1 3.7165 -3.1292 4.6694 37 1 3.6799 -4.5874 10.3781 38 1 3.8248 -5.4971 -1.5628 39 1 3.3071 -6.8876 -0.4671 40 1 0.8784 -6.2211 -0.7695 41 1 1.3960 -4.8305 -1.8646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505953832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:12 Heat of formation + Delta-G solvation = 19.524388 kcal Electronic energy + Delta-G solvation = -26461.723102 eV Core-core repulsion = 22504.872485 eV Total energy + Delta-G solvation = -3956.850617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.53490 -41.37901 -40.40100 -38.55558 -35.44107 -35.27976 -34.60276 -34.21302 -33.16535 -31.33318 -29.00823 -27.90136 -27.32603 -25.65785 -23.96480 -23.48060 -22.07533 -21.81375 -21.04492 -20.12851 -19.87045 -18.30516 -17.82181 -17.66597 -17.57493 -16.90254 -16.75278 -16.58891 -16.07598 -15.98624 -15.60618 -15.08711 -14.88117 -14.71058 -14.62151 -14.38529 -14.07042 -13.75651 -13.61125 -13.44639 -13.18360 -13.01778 -12.93183 -12.62547 -12.40931 -12.32762 -12.03533 -11.73694 -11.70493 -11.52457 -11.17875 -11.14120 -11.00661 -10.58664 -10.31515 -10.29569 -10.15171 -8.69083 -8.36789 -6.15020 -0.29958 1.07059 1.23211 1.30867 1.39980 1.44671 1.54863 1.56100 1.64967 1.86121 2.19215 2.25286 2.65556 2.97756 3.11859 3.29040 3.34537 3.53293 3.69807 3.79277 3.85349 3.89073 3.99921 4.23466 4.39977 4.44152 4.56114 4.59077 4.67646 4.71120 4.77461 4.88114 5.01146 5.16039 5.20194 5.24932 5.38700 5.39982 5.60950 6.15382 6.17772 6.40912 6.84750 7.04810 7.08807 7.17504 8.72645 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.002957 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.739659 B = 9465.551836 C =11183.561854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.298 5.298 4 N -0.052 5.052 5 N -0.346 5.346 6 H 0.469 0.531 7 C -0.072 4.072 8 C 0.605 3.395 9 O -0.525 6.525 10 N -0.680 5.680 11 C 0.068 3.932 12 C 0.154 3.846 13 N -0.706 5.706 14 C 0.532 3.468 15 O -0.563 6.563 16 C -0.128 4.128 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.273 1.273 26 C -0.132 4.132 27 C -0.154 4.154 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.417 0.583 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.411 0.589 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 2.795 -28.448 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 N -0.164 5.164 4 N -0.034 5.034 5 N -0.077 5.077 6 H 0.321 0.679 7 C -0.207 4.207 8 C 0.389 3.611 9 O -0.399 6.399 10 N -0.333 5.333 11 C -0.020 4.020 12 C 0.029 3.971 13 N -0.360 5.360 14 C 0.318 3.682 15 O -0.441 6.441 16 C -0.280 4.280 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.201 1.201 25 H -0.198 1.198 26 C -0.169 4.169 27 C -0.192 4.192 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.464 2.676 -27.631 27.799 hybrid contribution 2.043 0.469 0.463 2.147 sum 3.506 3.145 -27.168 27.574 Atomic orbital electron populations 1.20363 0.84110 1.04876 1.04100 1.22711 0.99532 0.87235 0.99670 1.74978 0.95728 1.26880 1.18798 1.78147 1.15705 0.93285 1.16261 1.45397 1.08973 1.06350 1.47026 0.67949 1.21944 0.85559 0.95962 1.17229 1.16717 0.85906 0.82185 0.76334 1.90871 1.17781 1.81995 1.49213 1.44919 1.09755 1.04174 1.74494 1.20692 1.09888 0.80634 0.90738 1.21084 0.93483 0.97321 0.85255 1.45501 1.35967 1.50443 1.04061 1.20078 0.83925 0.80725 0.83457 1.90711 1.35152 1.39129 1.79092 1.23348 1.02843 1.03964 0.97796 1.85625 1.46428 1.64300 0.95967 1.23226 1.18523 1.33205 0.94448 0.89909 1.26116 0.98605 0.96493 0.97872 1.70189 1.36058 1.39200 1.09263 0.84917 0.77461 0.77775 0.77867 1.17996 1.20099 1.19784 1.23643 0.95896 0.98619 0.98770 1.23307 0.95779 1.02511 0.97608 0.89962 0.88982 0.88970 0.74511 0.93198 0.89636 0.75190 0.86744 0.87868 0.91974 0.85561 0.86079 0.87487 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.93 71.24 0.71 -0.67 16 2 C 0.05 1.03 7.30 42.04 0.31 1.33 16 3 N -0.30 -7.01 12.35 -47.88 -0.59 -7.60 16 4 N -0.05 -1.02 13.35 37.02 0.49 -0.53 16 5 N -0.35 -4.07 6.98 -48.52 -0.34 -4.41 16 6 H 0.47 0.84 8.33 -219.91 -1.83 -0.99 16 7 C -0.07 -1.19 7.17 40.41 0.29 -0.90 16 8 C 0.60 10.00 7.74 86.61 0.67 10.67 16 9 O -0.53 -12.48 14.57 -4.10 -0.06 -12.54 16 10 N -0.68 -6.32 4.39 -426.32 -1.87 -8.20 16 11 C 0.07 0.80 2.01 3.60 0.01 0.81 16 12 C 0.15 3.11 5.90 86.38 0.51 3.62 16 13 N -0.71 -15.95 5.40 -463.06 -2.50 -18.45 16 14 C 0.53 18.88 7.85 87.66 0.69 19.57 16 15 O -0.56 -25.69 15.86 -3.06 -0.05 -25.73 16 16 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 17 S -0.15 -8.26 20.57 -56.49 -1.16 -9.43 16 18 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 22 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 C -0.13 -0.73 10.10 30.59 0.31 -0.42 16 27 C -0.15 -1.62 9.56 30.59 0.29 -1.33 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.69 6.62 -2.39 -0.02 1.67 16 31 H 0.42 0.56 8.11 -92.71 -0.75 -0.20 16 32 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 33 H 0.09 1.67 7.91 -2.39 -0.02 1.65 16 34 H 0.41 6.13 7.76 -92.71 -0.72 5.41 16 35 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 36 H 0.10 3.61 8.14 -2.40 -0.02 3.59 16 37 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 38 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.12 0.56 8.05 -2.39 -0.02 0.54 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.13 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -87.50 374.27 -0.62 -88.12 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -2.18 Total: 9.66 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.33 Total: -0.75 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -4.52 Total: -94.64 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.11 Total: -38.27 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.43 kcal Total: -87.50 -0.62 -88.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505953832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.640 kcal (2) G-P(sol) polarization free energy of solvation -87.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds