Wall clock time and date at job start Tue Mar 31 2020 23:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32584 * 2 1 4 4 C 1.55123 * 110.51267 * 237.87059 * 2 1 3 5 5 C 1.55155 * 101.48726 * 204.24759 * 4 2 1 6 6 H 1.09002 * 110.71546 * 276.83073 * 5 4 2 7 7 N 1.46895 * 110.72512 * 153.73769 * 5 4 2 8 8 C 1.46893 * 111.00318 * 157.43805 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 300.00675 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00238 * 16 14 12 20 20 C 1.54318 * 103.10407 * 35.27840 * 5 4 2 21 21 N 1.47024 * 107.26941 * 337.89834 * 20 5 4 22 22 C 1.34782 * 125.65041 * 178.97332 * 21 20 5 23 23 O 1.21602 * 120.00515 * 179.97438 * 22 21 20 24 24 C 1.47453 * 119.99685 * 359.97438 * 22 21 20 25 25 C 1.37974 * 124.15622 * 179.97438 * 24 22 21 26 26 S 1.72101 * 104.03754 * 179.97438 * 25 24 22 27 27 N 1.56407 * 96.14955 * 0.02562 * 26 25 24 28 28 N 1.27411 * 109.87734 * 359.72322 * 27 26 25 29 29 H 1.08996 * 109.47241 * 299.21489 * 1 2 3 30 30 H 1.08998 * 109.47405 * 59.21882 * 1 2 3 31 31 H 1.09000 * 109.47154 * 179.21448 * 1 2 3 32 32 H 1.09005 * 111.16542 * 86.14968 * 4 2 1 33 33 H 1.09004 * 110.93372 * 322.23707 * 4 2 1 34 34 H 1.00908 * 110.99391 * 281.38966 * 7 5 4 35 35 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 36 36 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 37 37 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.88272 * 97.31236 * 20 5 4 40 40 H 1.09003 * 109.88634 * 218.33033 * 20 5 4 41 41 H 1.08008 * 127.98230 * 359.96678 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0736 -0.7727 -1.2304 5 6 3.4803 -1.1970 -0.7320 6 1 4.1982 -0.3885 -0.8696 7 7 3.9313 -2.4129 -1.4219 8 6 5.3953 -2.5274 -1.3841 9 6 5.8196 -3.7841 -2.0995 10 8 4.9845 -4.5129 -2.5920 11 7 7.1269 -4.0986 -2.1912 12 6 7.5128 -5.2416 -2.8425 13 1 6.7694 -5.8902 -3.2817 14 6 8.8607 -5.5656 -2.9375 15 7 9.7655 -4.7762 -2.4035 16 14 9.3866 -7.1234 -3.8243 17 1 10.8666 -7.2388 -3.7866 18 1 8.7804 -8.3025 -3.1553 19 1 8.9309 -7.0669 -5.2365 20 6 3.2509 -1.4740 0.7688 21 7 2.0432 -0.7372 1.1689 22 6 1.4961 -0.7356 2.4007 23 8 0.4915 -0.0860 2.6190 24 6 2.1157 -1.5214 3.4836 25 6 1.6294 -1.5809 4.7735 26 16 2.7289 -2.6260 5.5863 27 7 3.6497 -2.8941 4.3508 28 7 3.2076 -2.2633 3.3360 29 1 -0.3633 0.5016 0.8969 30 1 -0.3634 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0141 32 1 2.1476 -0.1226 -2.1022 33 1 1.4562 -1.6447 -1.4465 34 1 3.4942 -3.2339 -1.0306 35 1 5.7298 -2.5692 -0.3475 36 1 5.8402 -1.6618 -1.8749 37 1 7.7948 -3.5160 -1.7971 38 1 10.7064 -5.0027 -2.4696 39 1 3.1043 -2.5418 0.9305 40 1 4.1081 -1.1260 1.3452 41 1 0.7595 -1.0859 5.1794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507316608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:32 Heat of formation + Delta-G solvation = 18.733349 kcal Electronic energy + Delta-G solvation = -26659.537813 eV Core-core repulsion = 22702.652894 eV Total energy + Delta-G solvation = -3956.884919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50762 -40.11111 -38.44842 -37.71852 -34.83007 -33.77840 -32.91101 -31.66459 -31.22478 -30.04221 -27.46855 -26.33966 -25.94136 -24.48594 -23.78144 -21.75201 -20.97476 -20.64268 -19.26128 -18.58564 -17.89539 -17.10012 -16.63494 -16.39269 -16.04864 -15.88919 -15.18588 -15.11950 -14.57468 -14.49024 -14.22838 -13.82371 -13.77336 -13.62065 -12.99877 -12.82886 -12.61338 -12.53315 -12.40564 -12.24851 -12.12366 -11.70381 -11.52147 -11.39150 -11.17967 -11.00576 -10.86681 -10.60725 -10.46265 -10.42851 -10.28960 -10.19625 -10.13444 -9.48295 -8.94125 -8.46099 -8.09269 -7.94314 -6.39845 -3.80610 -0.31509 0.54052 1.11121 1.17347 2.58844 2.80660 3.21621 3.27133 3.31621 3.44034 3.92447 4.03817 4.20726 4.28894 4.35693 4.47272 4.62694 4.89753 4.91507 5.03174 5.11157 5.17533 5.24156 5.28087 5.48093 5.61179 5.65732 5.80115 5.82270 5.89978 5.99001 6.00851 6.06775 6.27762 6.31444 7.07456 7.15211 7.19422 7.56839 7.58767 7.74585 8.07779 8.63027 9.19567 9.56142 10.07526 10.77828 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.002632 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.831240 B =10635.473901 C =12450.921677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.076 3.924 6 H 0.095 0.905 7 N -0.651 5.651 8 C 0.047 3.953 9 C 0.441 3.559 10 O -0.584 6.584 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.285 1.285 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.077 3.923 21 N -0.592 5.592 22 C 0.619 3.381 23 O -0.527 6.527 24 C -0.021 4.021 25 C -0.239 4.239 26 S 0.460 5.540 27 N -0.284 5.284 28 N -0.205 5.205 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.353 0.647 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 11.476 16.054 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.036 4.036 6 H 0.113 0.887 7 N -0.283 5.283 8 C -0.085 4.085 9 C 0.226 3.774 10 O -0.468 6.468 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.048 4.048 21 N -0.324 5.324 22 C 0.403 3.597 23 O -0.403 6.403 24 C -0.169 4.169 25 C -0.396 4.396 26 S 0.596 5.404 27 N -0.264 5.264 28 N -0.075 5.075 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.666 10.388 15.728 23.883 hybrid contribution 0.052 0.240 0.185 0.308 sum -14.614 10.629 15.913 24.078 Atomic orbital electron populations 1.22179 0.93550 1.02909 1.03655 1.22117 0.95489 0.95607 0.83705 0.90118 1.22948 0.95577 1.00764 0.96216 1.22731 0.97246 0.94711 0.88933 0.88693 1.60214 1.06203 1.04288 1.57607 1.21758 0.88544 0.98968 0.99249 1.19775 0.83508 0.88048 0.86023 1.90524 1.51295 1.53093 1.51905 1.41847 1.05379 1.22968 1.49738 1.19654 0.92133 0.99999 1.31146 0.87980 1.25257 0.95493 0.99296 0.97845 1.69606 1.01714 1.37905 1.45092 0.85923 0.77168 0.81346 0.79815 1.20991 1.19915 1.19887 1.23152 0.86866 0.97488 0.97330 1.48269 1.28024 1.47582 1.08534 1.16234 0.82949 0.80473 0.80083 1.90775 1.24413 1.43616 1.81526 1.22659 0.95623 1.02872 0.95709 1.28868 1.08108 1.05566 0.97100 1.81597 1.09016 1.28454 1.21346 1.78766 1.24765 1.22697 1.00215 1.71737 1.10211 1.05667 1.19917 0.89647 0.91634 0.92504 0.89093 0.89710 0.82633 0.93439 0.89408 0.77437 0.91830 0.90235 0.90477 0.77499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 8.72 37.16 0.32 -1.30 16 2 C 0.13 1.34 3.76 -66.30 -0.25 1.09 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -1.19 6.22 -24.47 -0.15 -1.34 16 5 C 0.08 0.89 3.24 -65.88 -0.21 0.67 16 6 H 0.09 1.02 7.86 -51.93 -0.41 0.62 16 7 N -0.65 -10.10 5.99 -106.06 -0.64 -10.73 16 8 C 0.05 0.81 6.03 -4.98 -0.03 0.78 16 9 C 0.44 10.37 7.82 -10.98 -0.09 10.29 16 10 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 11 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 12 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 13 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 16 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.08 0.91 5.19 -3.07 -0.02 0.89 16 21 N -0.59 -6.84 3.24 -164.17 -0.53 -7.38 16 22 C 0.62 7.64 7.62 -12.50 -0.10 7.55 16 23 O -0.53 -7.17 14.45 5.28 0.08 -7.09 16 24 C -0.02 -0.24 6.76 -83.78 -0.57 -0.81 16 25 C -0.24 -1.86 11.21 30.64 0.34 -1.52 16 26 S 0.46 3.12 23.38 -107.50 -2.51 0.61 16 27 N -0.28 -3.25 12.49 60.35 0.75 -2.50 16 28 N -0.20 -2.54 8.86 32.74 0.29 -2.25 16 29 H 0.08 0.97 5.88 -51.93 -0.31 0.66 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.35 5.82 7.80 -39.29 -0.31 5.52 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 37 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.08 1.05 6.95 -51.93 -0.36 0.69 16 40 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 41 H 0.21 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -33.60 359.61 -7.38 -40.98 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.99 Total: 12.54 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.98 Total: 8.26 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.54 Total: -61.13 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.16 Total: -22.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.51 Total: 0.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.60 -7.38 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507316608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.714 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds