Wall clock time and date at job start Tue Mar 31 2020 23:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32584 * 2 1 4 4 C 1.55123 * 110.51267 * 237.87059 * 2 1 3 5 5 C 1.55155 * 101.48726 * 204.24759 * 4 2 1 6 6 H 1.09002 * 110.71546 * 276.83073 * 5 4 2 7 7 N 1.46895 * 110.72512 * 153.73769 * 5 4 2 8 8 C 1.46893 * 111.00318 * 157.43805 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 300.00675 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00238 * 16 14 12 20 20 C 1.54318 * 103.10407 * 35.27840 * 5 4 2 21 21 N 1.47024 * 107.26941 * 337.89834 * 20 5 4 22 22 C 1.34782 * 125.65041 * 178.97332 * 21 20 5 23 23 O 1.21602 * 120.00515 * 179.97438 * 22 21 20 24 24 C 1.47453 * 119.99685 * 359.97438 * 22 21 20 25 25 C 1.37974 * 124.15622 * 179.97438 * 24 22 21 26 26 S 1.72101 * 104.03754 * 179.97438 * 25 24 22 27 27 N 1.56407 * 96.14955 * 0.02562 * 26 25 24 28 28 N 1.27411 * 109.87734 * 359.72322 * 27 26 25 29 29 H 1.08996 * 109.47241 * 299.21489 * 1 2 3 30 30 H 1.08998 * 109.47405 * 59.21882 * 1 2 3 31 31 H 1.09000 * 109.47154 * 179.21448 * 1 2 3 32 32 H 1.09005 * 111.16542 * 86.14968 * 4 2 1 33 33 H 1.09004 * 110.93372 * 322.23707 * 4 2 1 34 34 H 1.00908 * 110.99391 * 281.38966 * 7 5 4 35 35 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 36 36 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 37 37 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.88272 * 97.31236 * 20 5 4 40 40 H 1.09003 * 109.88634 * 218.33033 * 20 5 4 41 41 H 1.08008 * 127.98230 * 359.96678 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0736 -0.7727 -1.2304 5 6 3.4803 -1.1970 -0.7320 6 1 4.1982 -0.3885 -0.8696 7 7 3.9313 -2.4129 -1.4219 8 6 5.3953 -2.5274 -1.3841 9 6 5.8196 -3.7841 -2.0995 10 8 4.9845 -4.5129 -2.5920 11 7 7.1269 -4.0986 -2.1912 12 6 7.5128 -5.2416 -2.8425 13 1 6.7694 -5.8902 -3.2817 14 6 8.8607 -5.5656 -2.9375 15 7 9.7655 -4.7762 -2.4035 16 14 9.3866 -7.1234 -3.8243 17 1 10.8666 -7.2388 -3.7866 18 1 8.7804 -8.3025 -3.1553 19 1 8.9309 -7.0669 -5.2365 20 6 3.2509 -1.4740 0.7688 21 7 2.0432 -0.7372 1.1689 22 6 1.4961 -0.7356 2.4007 23 8 0.4915 -0.0860 2.6190 24 6 2.1157 -1.5214 3.4836 25 6 1.6294 -1.5809 4.7735 26 16 2.7289 -2.6260 5.5863 27 7 3.6497 -2.8941 4.3508 28 7 3.2076 -2.2633 3.3360 29 1 -0.3633 0.5016 0.8969 30 1 -0.3634 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0141 32 1 2.1476 -0.1226 -2.1022 33 1 1.4562 -1.6447 -1.4465 34 1 3.4942 -3.2339 -1.0306 35 1 5.7298 -2.5692 -0.3475 36 1 5.8402 -1.6618 -1.8749 37 1 7.7948 -3.5160 -1.7971 38 1 10.7064 -5.0027 -2.4696 39 1 3.1043 -2.5418 0.9305 40 1 4.1081 -1.1260 1.3452 41 1 0.7595 -1.0859 5.1794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507316608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:31 Heat of formation + Delta-G solvation = -7.662569 kcal Electronic energy + Delta-G solvation = -26660.682426 eV Core-core repulsion = 22702.652894 eV Total energy + Delta-G solvation = -3958.029532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.29926 -40.99697 -40.11866 -38.88709 -36.24460 -35.59541 -33.71190 -33.25825 -32.44943 -31.17843 -28.23308 -27.90710 -26.83561 -25.88974 -24.99839 -22.60619 -21.91851 -21.41987 -21.06142 -19.91129 -19.40359 -18.07648 -17.76292 -17.39948 -17.11476 -16.81680 -16.62776 -16.24595 -16.05782 -15.90078 -15.41800 -15.25577 -15.00914 -14.64561 -14.17557 -14.06234 -13.67609 -13.49925 -13.48141 -13.37093 -13.10120 -13.06091 -12.96290 -12.82737 -12.43152 -12.37733 -12.13684 -12.06226 -11.75963 -11.49285 -11.33202 -11.20501 -11.01959 -10.93540 -10.33591 -10.00560 -9.84897 -9.35707 -8.45555 -5.94234 -0.97410 -0.07188 0.28112 0.50549 1.40369 1.42014 1.52976 1.74849 1.93499 2.06922 2.29802 2.64500 2.90178 3.21773 3.39765 3.41227 3.63566 3.66677 3.84028 4.04182 4.12251 4.24428 4.29598 4.33915 4.41138 4.50628 4.59815 4.64841 4.77064 4.78786 4.94150 5.07096 5.18915 5.22689 5.41745 5.47763 5.88813 6.08951 6.18948 6.32291 6.39662 6.61203 6.86298 7.13594 7.57577 8.12884 8.71661 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.002632 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.831240 B =10635.473901 C =12450.921677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.097 0.903 4 C -0.108 4.108 5 C 0.079 3.921 6 H 0.113 0.887 7 N -0.661 5.661 8 C 0.063 3.937 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.992 3.008 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.271 1.271 20 C 0.088 3.912 21 N -0.594 5.594 22 C 0.615 3.385 23 O -0.545 6.545 24 C -0.049 4.049 25 C -0.232 4.232 26 S 0.557 5.443 27 N -0.338 5.338 28 N -0.233 5.233 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.344 0.656 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 12.420 17.027 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 H 0.114 0.886 4 C -0.147 4.147 5 C -0.032 4.032 6 H 0.131 0.869 7 N -0.292 5.292 8 C -0.069 4.069 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.037 4.037 21 N -0.326 5.326 22 C 0.399 3.601 23 O -0.423 6.423 24 C -0.197 4.197 25 C -0.389 4.389 26 S 0.692 5.308 27 N -0.319 5.319 28 N -0.102 5.102 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.790 11.362 16.702 25.036 hybrid contribution 0.001 -0.046 0.039 0.060 sum -14.790 11.316 16.741 25.041 Atomic orbital electron populations 1.22102 0.93380 1.02187 1.03916 1.22251 0.95621 0.96129 0.82965 0.88559 1.22907 0.94188 1.00626 0.96929 1.22814 0.98448 0.93405 0.88552 0.86874 1.60241 1.04969 1.05273 1.58712 1.21623 0.89875 0.96052 0.99383 1.20871 0.82435 0.89276 0.84859 1.90492 1.52179 1.54959 1.53416 1.41919 1.06310 1.22656 1.50105 1.19633 0.92449 1.01334 1.33027 0.90343 1.26028 0.94982 1.02106 0.98088 1.69667 1.02082 1.39044 1.45317 0.85009 0.77346 0.77576 0.78534 1.19461 1.19758 1.19667 1.22941 0.86986 0.96505 0.97264 1.48346 1.27861 1.47498 1.08876 1.16446 0.82774 0.80350 0.80483 1.90757 1.25119 1.44531 1.81939 1.22658 0.96432 1.03971 0.96675 1.29278 1.08573 1.04874 0.96199 1.81187 1.06196 1.25651 1.17783 1.78406 1.27310 1.24305 1.01874 1.71762 1.11008 1.06412 1.21010 0.91058 0.89563 0.93734 0.87278 0.90925 0.83621 0.91673 0.87045 0.76953 0.91297 0.91991 0.90657 0.75055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.72 71.98 0.63 -2.33 16 2 C 0.13 2.47 3.76 45.54 0.17 2.65 16 3 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.11 -2.05 6.22 32.06 0.20 -1.85 16 5 C 0.08 1.74 3.24 46.10 0.15 1.89 16 6 H 0.11 2.14 7.86 -2.39 -0.02 2.12 16 7 N -0.66 -20.11 5.99 -489.47 -2.93 -23.04 16 8 C 0.06 2.11 6.03 85.56 0.52 2.62 16 9 C 0.44 20.88 7.82 87.66 0.69 21.56 16 10 O -0.62 -34.74 15.78 -3.05 -0.05 -34.79 16 11 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 12 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 13 H 0.08 4.79 7.16 -2.92 -0.02 4.77 16 14 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 15 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 16 Si 0.99 43.29 29.55 68.60 2.03 45.31 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.09 2.06 5.19 86.73 0.45 2.51 16 21 N -0.59 -13.45 3.24 -791.56 -2.57 -16.02 16 22 C 0.61 15.02 7.62 86.67 0.66 15.68 16 23 O -0.55 -14.60 14.45 -4.04 -0.06 -14.66 16 24 C -0.05 -1.08 6.76 41.36 0.28 -0.80 16 25 C -0.23 -3.22 11.21 67.76 0.76 -2.46 16 26 S 0.56 6.48 23.38 -56.49 -1.32 5.16 16 27 N -0.34 -7.59 12.49 37.02 0.46 -7.13 16 28 N -0.23 -5.79 8.86 -50.34 -0.45 -6.23 16 29 H 0.07 1.57 5.88 -2.39 -0.01 1.56 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 34 H 0.34 11.54 7.80 -89.69 -0.70 10.84 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.11 3.25 8.08 -2.39 -0.02 3.24 16 37 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 38 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.06 1.69 6.95 -2.39 -0.02 1.67 16 40 H 0.08 1.79 7.69 -2.39 -0.02 1.77 16 41 H 0.23 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -74.39 359.61 -0.77 -75.17 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.33 Total: 36.31 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 5.78 Total: 20.88 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -6.82 Total: -133.38 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.11 Total: -49.45 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.32 Total: 5.16 kcal Total: -74.39 -0.77 -75.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507316608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.506 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds