Wall clock time and date at job start Tue Mar 31 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.00056 * 2 1 4 4 C 1.54337 * 109.77735 * 121.16640 * 2 1 3 5 5 C 1.55150 * 103.01883 * 97.49763 * 4 2 1 6 6 H 1.09001 * 111.00582 * 277.22811 * 5 4 2 7 7 N 1.46899 * 111.00542 * 153.38348 * 5 4 2 8 8 C 1.46899 * 111.00380 * 161.34863 * 7 5 4 9 9 C 1.50700 * 109.47032 * 179.97438 * 8 7 5 10 10 O 1.21286 * 120.00279 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99827 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00102 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99554 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00266 * 179.97438 * 12 11 9 15 15 N 1.31407 * 119.99963 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99696 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47386 * 89.99826 * 16 14 12 18 18 H 1.48498 * 109.46756 * 209.99811 * 16 14 12 19 19 H 1.48507 * 109.47026 * 329.99574 * 16 14 12 20 20 C 1.54909 * 101.58616 * 35.30396 * 5 4 2 21 21 N 1.47017 * 109.88288 * 238.90452 * 2 1 3 22 22 C 1.34783 * 125.64832 * 59.56090 * 21 2 1 23 23 O 1.21606 * 119.99615 * 359.71286 * 22 21 2 24 24 C 1.47447 * 120.00199 * 179.71844 * 22 21 2 25 25 C 1.37980 * 124.15770 * 179.97438 * 24 22 21 26 26 S 1.72096 * 104.03411 * 180.02562 * 25 24 22 27 27 N 1.56407 * 96.15569 * 359.97438 * 26 25 24 28 28 N 1.27408 * 109.87501 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47231 * 179.64299 * 1 2 3 30 30 H 1.09004 * 109.47141 * 299.63976 * 1 2 3 31 31 H 1.09000 * 109.46786 * 59.63949 * 1 2 3 32 32 H 1.09002 * 110.84971 * 339.02790 * 4 2 1 33 33 H 1.09001 * 110.66319 * 215.87887 * 4 2 1 34 34 H 1.00894 * 111.00339 * 37.38865 * 7 5 4 35 35 H 1.08996 * 109.47132 * 299.99522 * 8 7 5 36 36 H 1.09003 * 109.47443 * 59.99848 * 8 7 5 37 37 H 0.97002 * 119.99843 * 359.97438 * 11 9 8 38 38 H 0.96999 * 119.99791 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.37050 * 204.14882 * 20 5 4 40 40 H 1.09007 * 110.45860 * 81.87521 * 20 5 4 41 41 H 1.07998 * 127.97799 * 0.03417 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 6 2.3561 -2.1697 0.6914 6 1 1.4522 -2.7778 0.6579 7 7 3.4028 -2.8294 1.4834 8 6 3.3886 -4.2825 1.2683 9 6 4.4737 -4.9232 2.0947 10 8 5.1883 -4.2370 2.7944 11 7 4.6495 -6.2590 2.0571 12 6 5.6364 -6.8420 2.8093 13 1 6.2727 -6.2309 3.4323 14 6 5.8173 -8.2192 2.7709 15 7 6.7629 -8.7780 3.4923 16 14 4.7162 -9.2761 1.6938 17 1 5.3229 -9.4085 0.3450 18 1 4.5701 -10.6215 2.3051 19 1 3.3803 -8.6385 1.5753 20 6 2.8613 -1.8465 -0.7369 21 7 2.0300 -0.7140 -1.1839 22 6 1.7754 -0.3844 -2.4657 23 8 1.0728 0.5754 -2.7186 24 6 2.3486 -1.1876 -3.5614 25 6 2.1440 -0.9283 -4.9011 26 16 3.0339 -2.1622 -5.7056 27 7 3.5599 -2.8619 -4.4094 28 7 3.1254 -2.2497 -3.3800 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 1.2885 -0.7952 2.0192 33 1 2.9600 -0.2828 1.6225 34 1 3.3085 -2.6080 2.4632 35 1 2.4200 -4.6843 1.5656 36 1 3.5621 -4.4954 0.2135 37 1 4.0773 -6.8080 1.4984 38 1 6.8894 -9.7393 3.4652 39 1 2.7178 -2.7048 -1.3933 40 1 3.9126 -1.5594 -0.7134 41 1 1.5602 -0.1342 -5.3427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507316613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:38 Heat of formation + Delta-G solvation = 25.605793 kcal Electronic energy + Delta-G solvation = -26739.281911 eV Core-core repulsion = 22782.695003 eV Total energy + Delta-G solvation = -3956.586908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52724 -40.11607 -38.56918 -37.85102 -34.92680 -33.83835 -32.90028 -31.76487 -31.64514 -30.06142 -27.51042 -26.54034 -26.10530 -24.59206 -23.69659 -21.79887 -20.79268 -20.55874 -19.38115 -18.83695 -18.29150 -16.96952 -16.62347 -16.46262 -15.96825 -15.77720 -15.42484 -15.32140 -14.91457 -14.64082 -14.02927 -13.85828 -13.78220 -13.50957 -13.14887 -12.95190 -12.81870 -12.66729 -12.51555 -12.42350 -12.21795 -11.97555 -11.81900 -11.27922 -11.23317 -11.13183 -10.85695 -10.58272 -10.49985 -10.46921 -10.39582 -10.28461 -9.96259 -9.55873 -8.94274 -8.59948 -8.24199 -8.15984 -6.29859 -3.81140 -0.32764 0.52624 1.09238 1.15815 2.56020 2.79340 3.03731 3.08900 3.16456 3.43249 3.75123 3.94025 4.11643 4.24572 4.30606 4.40890 4.51889 4.72573 4.84019 4.87702 5.08470 5.13464 5.18805 5.26316 5.35657 5.57663 5.63736 5.65557 5.77446 5.78360 5.82063 5.91961 5.97133 6.04977 6.15477 7.03500 7.06755 7.17528 7.50877 7.59406 7.71883 8.15798 8.60966 8.96285 9.43876 9.83860 10.83308 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.002913 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.696728 B = 9608.713490 C =11525.141816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.059 0.941 7 N -0.654 5.654 8 C 0.046 3.954 9 C 0.451 3.549 10 O -0.564 6.564 11 N -0.590 5.590 12 C -0.304 4.304 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.882 5.882 16 Si 0.879 3.121 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.106 3.894 21 N -0.594 5.594 22 C 0.619 3.381 23 O -0.529 6.529 24 C -0.020 4.020 25 C -0.239 4.239 26 S 0.460 5.540 27 N -0.284 5.284 28 N -0.203 5.203 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.357 0.643 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 15.818 -18.213 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.038 4.038 6 H 0.077 0.923 7 N -0.288 5.288 8 C -0.086 4.086 9 C 0.237 3.763 10 O -0.446 6.446 11 N -0.230 5.230 12 C -0.433 4.433 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.522 5.522 16 Si 0.706 3.294 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.017 4.017 21 N -0.326 5.326 22 C 0.403 3.597 23 O -0.406 6.406 24 C -0.167 4.167 25 C -0.397 4.397 26 S 0.597 5.403 27 N -0.264 5.264 28 N -0.074 5.074 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.178 0.822 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.250 15.211 -18.754 27.544 hybrid contribution -2.341 -0.240 0.284 2.370 sum -15.591 14.971 -18.470 28.432 Atomic orbital electron populations 1.22181 0.94401 1.02513 1.03168 1.21602 0.94809 0.96409 0.83558 0.89992 1.22916 1.02645 0.94985 0.96295 1.22651 0.93043 0.94433 0.93692 0.92320 1.59925 1.47022 1.07801 1.14074 1.21788 0.97408 0.88241 1.01196 1.19663 0.87613 0.82558 0.86498 1.90565 1.48345 1.61921 1.43804 1.42204 1.32359 1.06117 1.42291 1.19433 1.09889 0.91653 1.22342 0.86262 1.25033 0.97049 0.96547 0.97500 1.69620 1.31310 1.11628 1.39616 0.86678 0.80559 0.80990 0.81203 1.19542 1.20218 1.19541 1.22699 0.95387 0.88857 0.94802 1.48303 1.49380 1.30660 1.04249 1.16202 0.80283 0.83052 0.80189 1.90818 1.38676 1.28047 1.83026 1.22614 1.02285 0.97194 0.94599 1.28865 1.06636 1.07590 0.96580 1.81599 1.28849 1.10566 1.19336 1.78775 1.23486 1.25290 0.98879 1.71753 1.09061 1.05582 1.20974 0.92413 0.91349 0.91028 0.89595 0.88969 0.82235 0.93607 0.89215 0.79683 0.91626 0.88568 0.89445 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.05 37.16 0.34 -1.13 16 2 C 0.14 1.36 3.51 -66.95 -0.23 1.12 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.20 5.95 -24.89 -0.15 -1.35 16 5 C 0.07 0.83 3.32 -65.57 -0.22 0.61 16 6 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 7 N -0.65 -9.54 6.00 -105.73 -0.63 -10.18 16 8 C 0.05 0.75 6.04 -4.98 -0.03 0.72 16 9 C 0.45 10.13 7.82 -10.98 -0.09 10.05 16 10 O -0.56 -14.98 15.78 5.55 0.09 -14.89 16 11 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 12 C -0.30 -8.63 10.16 -14.93 -0.15 -8.79 16 13 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 14 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 15 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 16 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 20 C 0.11 1.27 5.72 -2.53 -0.01 1.26 16 21 N -0.59 -6.77 3.08 -164.26 -0.51 -7.28 16 22 C 0.62 7.53 7.63 -12.51 -0.10 7.43 16 23 O -0.53 -7.23 15.68 5.27 0.08 -7.15 16 24 C -0.02 -0.21 6.76 -83.78 -0.57 -0.78 16 25 C -0.24 -1.79 11.21 30.64 0.34 -1.44 16 26 S 0.46 2.96 23.38 -107.50 -2.51 0.44 16 27 N -0.28 -3.13 12.49 60.35 0.75 -2.37 16 28 N -0.20 -2.45 8.51 32.74 0.28 -2.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.75 6.73 -51.93 -0.35 0.40 16 32 H 0.09 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.36 5.26 8.23 -39.29 -0.32 4.94 16 35 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.10 1.22 6.08 -51.93 -0.32 0.90 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -34.90 358.35 -6.98 -41.88 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.98 Total: 11.99 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -0.96 Total: 8.75 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.61 Total: -61.20 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.17 Total: -22.04 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.51 Total: 0.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.90 -6.98 -41.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507316613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.487 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds