Wall clock time and date at job start Tue Mar 31 2020 23:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.00056 * 2 1 4 4 C 1.54337 * 109.77735 * 121.16640 * 2 1 3 5 5 C 1.55150 * 103.01883 * 97.49763 * 4 2 1 6 6 H 1.09001 * 111.00582 * 277.22811 * 5 4 2 7 7 N 1.46899 * 111.00542 * 153.38348 * 5 4 2 8 8 C 1.46899 * 111.00380 * 161.34863 * 7 5 4 9 9 C 1.50700 * 109.47032 * 179.97438 * 8 7 5 10 10 O 1.21286 * 120.00279 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99827 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00102 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99554 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00266 * 179.97438 * 12 11 9 15 15 N 1.31407 * 119.99963 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99696 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47386 * 89.99826 * 16 14 12 18 18 H 1.48498 * 109.46756 * 209.99811 * 16 14 12 19 19 H 1.48507 * 109.47026 * 329.99574 * 16 14 12 20 20 C 1.54909 * 101.58616 * 35.30396 * 5 4 2 21 21 N 1.47017 * 109.88288 * 238.90452 * 2 1 3 22 22 C 1.34783 * 125.64832 * 59.56090 * 21 2 1 23 23 O 1.21606 * 119.99615 * 359.71286 * 22 21 2 24 24 C 1.47447 * 120.00199 * 179.71844 * 22 21 2 25 25 C 1.37980 * 124.15770 * 179.97438 * 24 22 21 26 26 S 1.72096 * 104.03411 * 180.02562 * 25 24 22 27 27 N 1.56407 * 96.15569 * 359.97438 * 26 25 24 28 28 N 1.27408 * 109.87501 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47231 * 179.64299 * 1 2 3 30 30 H 1.09004 * 109.47141 * 299.63976 * 1 2 3 31 31 H 1.09000 * 109.46786 * 59.63949 * 1 2 3 32 32 H 1.09002 * 110.84971 * 339.02790 * 4 2 1 33 33 H 1.09001 * 110.66319 * 215.87887 * 4 2 1 34 34 H 1.00894 * 111.00339 * 37.38865 * 7 5 4 35 35 H 1.08996 * 109.47132 * 299.99522 * 8 7 5 36 36 H 1.09003 * 109.47443 * 59.99848 * 8 7 5 37 37 H 0.97002 * 119.99843 * 359.97438 * 11 9 8 38 38 H 0.96999 * 119.99791 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.37050 * 204.14882 * 20 5 4 40 40 H 1.09007 * 110.45860 * 81.87521 * 20 5 4 41 41 H 1.07998 * 127.97799 * 0.03417 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 6 2.3561 -2.1697 0.6914 6 1 1.4522 -2.7778 0.6579 7 7 3.4028 -2.8294 1.4834 8 6 3.3886 -4.2825 1.2683 9 6 4.4737 -4.9232 2.0947 10 8 5.1883 -4.2370 2.7944 11 7 4.6495 -6.2590 2.0571 12 6 5.6364 -6.8420 2.8093 13 1 6.2727 -6.2309 3.4323 14 6 5.8173 -8.2192 2.7709 15 7 6.7629 -8.7780 3.4923 16 14 4.7162 -9.2761 1.6938 17 1 5.3229 -9.4085 0.3450 18 1 4.5701 -10.6215 2.3051 19 1 3.3803 -8.6385 1.5753 20 6 2.8613 -1.8465 -0.7369 21 7 2.0300 -0.7140 -1.1839 22 6 1.7754 -0.3844 -2.4657 23 8 1.0728 0.5754 -2.7186 24 6 2.3486 -1.1876 -3.5614 25 6 2.1440 -0.9283 -4.9011 26 16 3.0339 -2.1622 -5.7056 27 7 3.5599 -2.8619 -4.4094 28 7 3.1254 -2.2497 -3.3800 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 1.2885 -0.7952 2.0192 33 1 2.9600 -0.2828 1.6225 34 1 3.3085 -2.6080 2.4632 35 1 2.4200 -4.6843 1.5656 36 1 3.5621 -4.4954 0.2135 37 1 4.0773 -6.8080 1.4984 38 1 6.8894 -9.7393 3.4652 39 1 2.7178 -2.7048 -1.3933 40 1 3.9126 -1.5594 -0.7134 41 1 1.5602 -0.1342 -5.3427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507316613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:37 Heat of formation + Delta-G solvation = -3.097371 kcal Electronic energy + Delta-G solvation = -26740.526574 eV Core-core repulsion = 22782.695003 eV Total energy + Delta-G solvation = -3957.831570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28147 -40.96666 -40.24695 -38.91513 -36.29364 -35.64095 -33.74240 -33.65824 -32.49638 -31.12053 -28.25306 -28.03439 -26.92407 -25.80095 -25.03894 -22.62483 -21.64166 -21.39231 -21.19300 -20.27078 -19.60948 -17.89998 -17.67929 -17.24607 -17.20919 -16.87365 -16.71822 -16.41683 -16.20190 -15.70865 -15.47347 -14.97252 -14.77997 -14.73192 -14.55063 -14.30463 -13.89271 -13.82956 -13.58309 -13.45432 -13.16430 -13.09787 -12.91739 -12.84830 -12.40349 -12.08753 -12.04337 -11.96455 -11.69562 -11.50569 -11.33795 -11.17333 -11.13297 -10.90345 -10.42467 -10.23639 -9.83271 -9.39925 -8.40455 -6.00979 -0.94668 -0.04798 0.29687 0.53184 1.30490 1.36437 1.44521 1.74561 1.94959 1.96840 2.23596 2.62775 2.76582 3.16117 3.24028 3.51161 3.56646 3.66216 3.77301 4.00896 4.14351 4.23344 4.28886 4.33172 4.38536 4.45486 4.56113 4.65403 4.81758 4.90047 4.95157 5.00503 5.08212 5.25053 5.38518 5.53768 5.90711 6.02929 6.22462 6.37843 6.42061 6.60591 6.86304 6.89178 7.40931 7.97193 8.77256 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.002913 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.696728 B = 9608.713490 C =11525.141816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.081 0.919 4 C -0.120 4.120 5 C 0.078 3.922 6 H 0.076 0.924 7 N -0.670 5.670 8 C 0.062 3.938 9 C 0.451 3.549 10 O -0.612 6.612 11 N -0.592 5.592 12 C -0.327 4.327 13 H 0.057 0.943 14 C -0.014 4.014 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.231 1.231 20 C 0.113 3.887 21 N -0.594 5.594 22 C 0.616 3.384 23 O -0.551 6.551 24 C -0.047 4.047 25 C -0.233 4.233 26 S 0.558 5.442 27 N -0.336 5.336 28 N -0.231 5.231 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.355 0.645 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.179 15.641 -20.879 31.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.033 4.033 6 H 0.094 0.906 7 N -0.304 5.304 8 C -0.071 4.071 9 C 0.239 3.761 10 O -0.496 6.496 11 N -0.233 5.233 12 C -0.457 4.457 13 H 0.075 0.925 14 C -0.213 4.213 15 N -0.575 5.575 16 Si 0.783 3.217 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.154 1.154 20 C -0.011 4.011 21 N -0.326 5.326 22 C 0.400 3.600 23 O -0.429 6.429 24 C -0.195 4.195 25 C -0.390 4.390 26 S 0.693 5.307 27 N -0.317 5.317 28 N -0.100 5.100 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.380 15.052 -21.418 30.880 hybrid contribution -1.280 -0.042 1.027 1.642 sum -17.660 15.010 -20.392 30.871 Atomic orbital electron populations 1.22114 0.93394 1.02587 1.03337 1.21738 0.95564 0.96301 0.83171 0.90146 1.22885 1.03120 0.93318 0.96496 1.22658 0.92458 0.95426 0.92709 0.90626 1.59851 1.49135 1.07027 1.14403 1.21677 0.95997 0.88857 1.00521 1.20914 0.87812 0.81908 0.85494 1.90544 1.50371 1.62961 1.45728 1.42039 1.31946 1.06928 1.42428 1.19017 1.11245 0.91998 1.23412 0.92534 1.26087 0.98680 0.97625 0.98893 1.69801 1.33626 1.12438 1.41685 0.85395 0.79597 0.78205 0.78534 1.18375 1.19944 1.15413 1.22527 0.94369 0.88895 0.95264 1.48367 1.49098 1.30514 1.04637 1.16431 0.79978 0.82910 0.80633 1.90795 1.39753 1.28973 1.83398 1.22581 1.03627 0.97855 0.95447 1.29269 1.05877 1.08105 0.95777 1.81203 1.25851 1.07898 1.15733 1.78417 1.25448 1.27221 1.00565 1.71775 1.09847 1.06237 1.22104 0.92285 0.89266 0.92762 0.87263 0.89557 0.82399 0.90109 0.87457 0.77548 0.91162 0.88974 0.91586 0.75163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.05 71.98 0.65 -1.82 16 2 C 0.13 2.44 3.51 45.35 0.16 2.60 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.12 -1.98 5.95 31.78 0.19 -1.79 16 5 C 0.08 1.61 3.32 46.30 0.15 1.76 16 6 H 0.08 1.36 7.92 -2.39 -0.02 1.35 16 7 N -0.67 -18.62 6.00 -488.42 -2.93 -21.55 16 8 C 0.06 1.86 6.04 85.56 0.52 2.38 16 9 C 0.45 20.22 7.82 87.66 0.69 20.91 16 10 O -0.61 -33.60 15.78 -3.05 -0.05 -33.65 16 11 N -0.59 -28.00 5.09 -306.98 -1.56 -29.57 16 12 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 13 H 0.06 3.96 7.39 -2.91 -0.02 3.93 16 14 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 15 N -0.93 -56.70 13.96 21.66 0.30 -56.40 16 16 Si 0.96 39.12 27.74 68.60 1.90 41.03 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 20 C 0.11 2.63 5.72 86.86 0.50 3.13 16 21 N -0.59 -13.11 3.08 -791.84 -2.44 -15.55 16 22 C 0.62 14.62 7.63 86.67 0.66 15.28 16 23 O -0.55 -14.72 15.68 -4.05 -0.06 -14.78 16 24 C -0.05 -0.98 6.76 41.36 0.28 -0.70 16 25 C -0.23 -2.99 11.21 67.76 0.76 -2.23 16 26 S 0.56 5.78 23.38 -56.49 -1.32 4.46 16 27 N -0.34 -7.00 12.49 37.02 0.46 -6.54 16 28 N -0.23 -5.40 8.51 -50.34 -0.43 -5.83 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.07 6.73 -2.39 -0.02 1.05 16 32 H 0.11 1.32 7.83 -2.39 -0.02 1.30 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.36 10.11 8.23 -89.70 -0.74 9.37 16 35 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 36 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.39 15.32 5.76 -92.71 -0.53 14.79 16 38 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.09 2.25 6.08 -2.39 -0.01 2.24 16 40 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.23 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -82.25 358.35 -0.48 -82.73 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.23 Total: 34.92 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 5.87 Total: 20.75 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -6.60 Total: -135.44 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.11 Total: -48.43 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.03 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.32 Total: 4.46 kcal Total: -82.25 -0.48 -82.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507316613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.628 kcal (2) G-P(sol) polarization free energy of solvation -82.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds