Wall clock time and date at job start Tue Mar 31 2020 23:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99781 * 2 1 4 4 C 1.54320 * 109.98248 * 238.97445 * 2 1 3 5 5 C 1.55154 * 102.86276 * 263.04412 * 4 2 1 6 6 H 1.09003 * 111.00195 * 82.38078 * 5 4 2 7 7 N 1.46902 * 111.00532 * 206.23099 * 5 4 2 8 8 C 1.46905 * 111.00077 * 198.65120 * 7 5 4 9 9 C 1.50694 * 109.47011 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00125 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.37091 * 120.00058 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00333 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00043 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00056 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00203 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46855 * 59.99986 * 16 14 12 18 18 H 1.48495 * 109.47433 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47085 * 300.00561 * 16 14 12 20 20 C 1.54912 * 101.58299 * 324.30674 * 5 4 2 21 21 N 1.47023 * 109.88212 * 121.09991 * 2 1 3 22 22 C 1.34766 * 125.64773 * 300.50691 * 21 2 1 23 23 O 1.21603 * 120.00193 * 359.72441 * 22 21 2 24 24 C 1.47452 * 120.00371 * 179.72167 * 22 21 2 25 25 C 1.37975 * 124.15726 * 180.02562 * 24 22 21 26 26 S 1.72105 * 104.03369 * 179.73414 * 25 24 22 27 27 N 1.56408 * 96.15164 * 0.26365 * 26 25 24 28 28 N 1.27417 * 109.87832 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.46630 * 300.35394 * 1 2 3 30 30 H 1.08998 * 109.47148 * 60.35981 * 1 2 3 31 31 H 1.08998 * 109.46689 * 180.35518 * 1 2 3 32 32 H 1.09007 * 110.92455 * 144.63310 * 4 2 1 33 33 H 1.08999 * 110.59186 * 21.30803 * 4 2 1 34 34 H 1.00900 * 110.99578 * 322.60330 * 7 5 4 35 35 H 1.09001 * 109.47022 * 300.00439 * 8 7 5 36 36 H 1.09000 * 109.46697 * 60.00211 * 8 7 5 37 37 H 0.97001 * 119.99893 * 359.97438 * 11 9 8 38 38 H 0.96993 * 120.00495 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.36468 * 278.16653 * 20 5 4 40 40 H 1.08999 * 110.45983 * 155.89476 * 20 5 4 41 41 H 1.08002 * 127.98713 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0574 -0.7475 -1.2428 5 6 2.3476 -2.1692 -0.6934 6 1 1.4382 -2.7694 -0.6630 7 7 3.3902 -2.8367 -1.4843 8 6 3.3627 -4.2900 -1.2719 9 6 4.4441 -4.9388 -2.0970 10 8 5.1663 -4.2576 -2.7938 11 7 4.6080 -6.2761 -2.0614 12 6 5.5914 -6.8663 -2.8124 13 1 6.2345 -6.2598 -3.4328 14 6 5.7608 -8.2450 -2.7753 15 7 4.9787 -8.9830 -2.0200 16 14 7.1012 -9.0493 -3.7980 17 1 8.4245 -8.5141 -3.3885 18 1 7.0739 -10.5183 -3.5828 19 1 6.8713 -8.7545 -5.2352 20 6 2.8524 -1.8531 0.7366 21 7 2.0300 -0.7142 1.1839 22 6 1.7744 -0.3854 2.4656 23 8 1.0791 0.5796 2.7187 24 6 2.3376 -1.1959 3.5611 25 6 2.1311 -0.9380 4.9007 26 16 3.0026 -2.1852 5.7050 27 7 3.5300 -2.8838 4.4088 28 7 3.1089 -2.2619 3.3795 29 1 -0.3632 0.5193 0.8868 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3632 -1.0276 0.0064 32 1 2.9707 -0.2848 -1.6170 33 1 1.2950 -0.7829 -2.0210 34 1 3.2999 -2.6126 -2.4640 35 1 3.5319 -4.5063 -0.2170 36 1 2.3912 -4.6827 -1.5721 37 1 4.0302 -6.8209 -1.5044 38 1 5.0967 -9.9454 -1.9943 39 1 3.9060 -1.5746 0.7140 40 1 2.7013 -2.7106 1.3922 41 1 1.5520 -0.1406 5.3426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507316615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:41 Heat of formation + Delta-G solvation = 18.569062 kcal Electronic energy + Delta-G solvation = -26664.143163 eV Core-core repulsion = 22707.251120 eV Total energy + Delta-G solvation = -3956.892043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47289 -40.06028 -38.41402 -37.74049 -34.82941 -33.76976 -32.84506 -31.70412 -31.21446 -29.93939 -27.45418 -26.36270 -26.05458 -24.57407 -23.82414 -21.75215 -20.72721 -20.50233 -19.25461 -18.73141 -17.85985 -16.91283 -16.58815 -16.40775 -15.90433 -15.76249 -15.38048 -15.16678 -14.74589 -14.45883 -14.05336 -13.83596 -13.70929 -13.42988 -13.36569 -12.88078 -12.74730 -12.59117 -12.43957 -12.26801 -12.01631 -11.66138 -11.52167 -11.20981 -11.15615 -11.00863 -10.78014 -10.44882 -10.42757 -10.41605 -10.34519 -10.22671 -10.19262 -9.48032 -8.88807 -8.46553 -8.12254 -7.94211 -6.39542 -3.80345 -0.27521 0.57850 1.14782 1.21281 2.61437 2.84499 3.21697 3.27262 3.31688 3.48879 3.92575 4.01076 4.20153 4.35909 4.37766 4.48100 4.56686 4.79251 4.92079 5.08213 5.14215 5.21053 5.25232 5.33540 5.41027 5.66408 5.70059 5.76493 5.82687 5.87256 5.98786 6.02341 6.08452 6.20361 6.30016 7.11413 7.16808 7.23656 7.57004 7.60691 7.77020 8.08007 8.63286 9.19773 9.56459 10.07798 10.78148 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002665 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.115023 B =10504.481629 C =12402.179924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.059 0.941 7 N -0.655 5.655 8 C 0.049 3.951 9 C 0.442 3.558 10 O -0.584 6.584 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.106 3.894 21 N -0.593 5.593 22 C 0.619 3.381 23 O -0.530 6.530 24 C -0.020 4.020 25 C -0.240 4.240 26 S 0.459 5.541 27 N -0.283 5.283 28 N -0.202 5.202 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.355 0.645 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 15.878 14.725 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.099 0.901 4 C -0.168 4.168 5 C -0.038 4.038 6 H 0.076 0.924 7 N -0.288 5.288 8 C -0.083 4.083 9 C 0.227 3.773 10 O -0.468 6.468 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.017 4.017 21 N -0.326 5.326 22 C 0.403 3.597 23 O -0.407 6.407 24 C -0.167 4.167 25 C -0.397 4.397 26 S 0.595 5.405 27 N -0.263 5.263 28 N -0.073 5.073 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.176 0.824 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.225 15.229 15.379 23.527 hybrid contribution -1.280 -0.023 -1.195 1.751 sum -10.505 15.206 14.184 23.297 Atomic orbital electron populations 1.22174 0.94400 1.02543 1.03129 1.21594 0.94773 0.96418 0.83617 0.90067 1.22919 1.02563 0.95074 0.96276 1.22655 0.93197 0.94293 0.93682 0.92353 1.59946 1.47109 1.07757 1.14012 1.21752 0.97510 0.87847 1.01229 1.19762 0.87781 0.83046 0.86704 1.90522 1.48590 1.62731 1.44945 1.41849 1.31694 1.05109 1.41289 1.19653 1.10577 0.90430 1.22271 0.87968 1.25257 0.98575 0.96302 0.97763 1.69601 1.38827 1.06554 1.39329 0.85923 0.80807 0.77616 0.79903 1.19869 1.21001 1.19933 1.22702 0.95506 0.88658 0.94856 1.48307 1.49619 1.30390 1.04236 1.16200 0.80199 0.83132 0.80199 1.90814 1.38982 1.27832 1.83035 1.22618 1.02356 0.97128 0.94594 1.28857 1.06683 1.07590 0.96580 1.81592 1.29580 1.09895 1.19422 1.78791 1.23460 1.25199 0.98852 1.71765 1.09211 1.05360 1.20949 0.91039 0.91374 0.92377 0.88988 0.89655 0.82422 0.89353 0.93738 0.77447 0.91830 0.89502 0.88524 0.77536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.07 37.16 0.34 -1.20 16 2 C 0.14 1.42 3.48 -66.95 -0.23 1.19 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.27 5.97 -24.90 -0.15 -1.42 16 5 C 0.07 0.88 3.31 -65.56 -0.22 0.67 16 6 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 7 N -0.65 -10.10 6.00 -105.72 -0.63 -10.74 16 8 C 0.05 0.86 6.04 -4.98 -0.03 0.83 16 9 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 10 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 11 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 13 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 16 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.11 1.35 5.73 -2.53 -0.01 1.33 16 21 N -0.59 -7.10 3.08 -164.27 -0.51 -7.61 16 22 C 0.62 7.84 7.62 -12.51 -0.10 7.75 16 23 O -0.53 -7.47 15.70 5.27 0.08 -7.38 16 24 C -0.02 -0.23 6.76 -83.78 -0.57 -0.79 16 25 C -0.24 -1.90 11.21 30.64 0.34 -1.56 16 26 S 0.46 3.17 23.38 -107.50 -2.51 0.66 16 27 N -0.28 -3.29 12.49 60.35 0.75 -2.53 16 28 N -0.20 -2.56 8.51 32.74 0.28 -2.29 16 29 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.36 5.52 8.23 -39.29 -0.32 5.20 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.10 1.31 6.07 -51.93 -0.32 0.99 16 41 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -33.64 361.50 -7.33 -40.97 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.02 Total: 12.25 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.95 Total: 9.06 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.56 Total: -61.50 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.51 Total: 0.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.64 -7.33 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507316615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.538 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds