Wall clock time and date at job start Tue Mar 31 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99781 * 2 1 4 4 C 1.54320 * 109.98248 * 238.97445 * 2 1 3 5 5 C 1.55154 * 102.86276 * 263.04412 * 4 2 1 6 6 H 1.09003 * 111.00195 * 82.38078 * 5 4 2 7 7 N 1.46902 * 111.00532 * 206.23099 * 5 4 2 8 8 C 1.46905 * 111.00077 * 198.65120 * 7 5 4 9 9 C 1.50694 * 109.47011 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00125 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.37091 * 120.00058 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00333 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00043 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00056 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00203 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46855 * 59.99986 * 16 14 12 18 18 H 1.48495 * 109.47433 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47085 * 300.00561 * 16 14 12 20 20 C 1.54912 * 101.58299 * 324.30674 * 5 4 2 21 21 N 1.47023 * 109.88212 * 121.09991 * 2 1 3 22 22 C 1.34766 * 125.64773 * 300.50691 * 21 2 1 23 23 O 1.21603 * 120.00193 * 359.72441 * 22 21 2 24 24 C 1.47452 * 120.00371 * 179.72167 * 22 21 2 25 25 C 1.37975 * 124.15726 * 180.02562 * 24 22 21 26 26 S 1.72105 * 104.03369 * 179.73414 * 25 24 22 27 27 N 1.56408 * 96.15164 * 0.26365 * 26 25 24 28 28 N 1.27417 * 109.87832 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.46630 * 300.35394 * 1 2 3 30 30 H 1.08998 * 109.47148 * 60.35981 * 1 2 3 31 31 H 1.08998 * 109.46689 * 180.35518 * 1 2 3 32 32 H 1.09007 * 110.92455 * 144.63310 * 4 2 1 33 33 H 1.08999 * 110.59186 * 21.30803 * 4 2 1 34 34 H 1.00900 * 110.99578 * 322.60330 * 7 5 4 35 35 H 1.09001 * 109.47022 * 300.00439 * 8 7 5 36 36 H 1.09000 * 109.46697 * 60.00211 * 8 7 5 37 37 H 0.97001 * 119.99893 * 359.97438 * 11 9 8 38 38 H 0.96993 * 120.00495 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.36468 * 278.16653 * 20 5 4 40 40 H 1.08999 * 110.45983 * 155.89476 * 20 5 4 41 41 H 1.08002 * 127.98713 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0574 -0.7475 -1.2428 5 6 2.3476 -2.1692 -0.6934 6 1 1.4382 -2.7694 -0.6630 7 7 3.3902 -2.8367 -1.4843 8 6 3.3627 -4.2900 -1.2719 9 6 4.4441 -4.9388 -2.0970 10 8 5.1663 -4.2576 -2.7938 11 7 4.6080 -6.2761 -2.0614 12 6 5.5914 -6.8663 -2.8124 13 1 6.2345 -6.2598 -3.4328 14 6 5.7608 -8.2450 -2.7753 15 7 4.9787 -8.9830 -2.0200 16 14 7.1012 -9.0493 -3.7980 17 1 8.4245 -8.5141 -3.3885 18 1 7.0739 -10.5183 -3.5828 19 1 6.8713 -8.7545 -5.2352 20 6 2.8524 -1.8531 0.7366 21 7 2.0300 -0.7142 1.1839 22 6 1.7744 -0.3854 2.4656 23 8 1.0791 0.5796 2.7187 24 6 2.3376 -1.1959 3.5611 25 6 2.1311 -0.9380 4.9007 26 16 3.0026 -2.1852 5.7050 27 7 3.5300 -2.8838 4.4088 28 7 3.1089 -2.2619 3.3795 29 1 -0.3632 0.5193 0.8868 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3632 -1.0276 0.0064 32 1 2.9707 -0.2848 -1.6170 33 1 1.2950 -0.7829 -2.0210 34 1 3.2999 -2.6126 -2.4640 35 1 3.5319 -4.5063 -0.2170 36 1 2.3912 -4.6827 -1.5721 37 1 4.0302 -6.8209 -1.5044 38 1 5.0967 -9.9454 -1.9943 39 1 3.9060 -1.5746 0.7140 40 1 2.7013 -2.7106 1.3922 41 1 1.5520 -0.1406 5.3426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507316615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:40 Heat of formation + Delta-G solvation = -7.754663 kcal Electronic energy + Delta-G solvation = -26665.284645 eV Core-core repulsion = 22707.251120 eV Total energy + Delta-G solvation = -3958.033525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28589 -40.96528 -40.11011 -38.90428 -36.26503 -35.59678 -33.66919 -33.25371 -32.49722 -31.07073 -28.23042 -27.94107 -26.93662 -25.94029 -25.09979 -22.63794 -21.64518 -21.37257 -21.00672 -19.91016 -19.61393 -17.91266 -17.69509 -17.23585 -17.21127 -16.72387 -16.70675 -16.33958 -16.18645 -15.86649 -15.51029 -15.12166 -14.78722 -14.70596 -14.47313 -13.97646 -13.82386 -13.58655 -13.52369 -13.39260 -13.12193 -13.09785 -12.90993 -12.81732 -12.42104 -12.13384 -12.09130 -12.03121 -11.69094 -11.48663 -11.34509 -11.17708 -11.13535 -10.90531 -10.33259 -10.00434 -9.83672 -9.40062 -8.45218 -5.94001 -0.94953 -0.04874 0.29397 0.52957 1.40698 1.42410 1.53383 1.74307 1.94621 2.06657 2.30027 2.66342 2.90124 3.22168 3.30685 3.54185 3.60155 3.65851 3.76653 4.00584 4.21375 4.27308 4.32151 4.33333 4.38125 4.49649 4.58860 4.66012 4.81170 4.89050 4.94562 5.00028 5.07843 5.24550 5.37908 5.42054 5.88141 6.08654 6.21952 6.39277 6.42205 6.61105 6.85960 7.13658 7.57529 8.12480 8.72068 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002665 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.115023 B =10504.481629 C =12402.179924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.083 0.917 4 C -0.119 4.119 5 C 0.076 3.924 6 H 0.071 0.929 7 N -0.666 5.666 8 C 0.065 3.935 9 C 0.440 3.560 10 O -0.621 6.621 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.080 0.920 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.992 3.008 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.114 3.886 21 N -0.594 5.594 22 C 0.616 3.384 23 O -0.550 6.550 24 C -0.048 4.048 25 C -0.232 4.232 26 S 0.558 5.442 27 N -0.337 5.337 28 N -0.232 5.232 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.355 0.645 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 16.149 15.611 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.034 4.034 6 H 0.089 0.911 7 N -0.300 5.300 8 C -0.067 4.067 9 C 0.227 3.773 10 O -0.507 6.507 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.098 0.902 14 C -0.213 4.213 15 N -0.562 5.562 16 Si 0.816 3.184 17 H -0.198 1.198 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.009 4.009 21 N -0.326 5.326 22 C 0.401 3.599 23 O -0.428 6.428 24 C -0.196 4.196 25 C -0.389 4.389 26 S 0.694 5.306 27 N -0.318 5.318 28 N -0.101 5.101 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.176 0.824 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.224 15.498 16.269 24.686 hybrid contribution -0.990 -0.031 -1.294 1.629 sum -11.214 15.467 14.975 24.274 Atomic orbital electron populations 1.22111 0.93407 1.02503 1.03421 1.21746 0.95524 0.96397 0.83123 0.89926 1.22889 1.03175 0.93077 0.96538 1.22665 0.92466 0.95444 0.92846 0.91147 1.59872 1.49135 1.06554 1.14404 1.21571 0.96086 0.88811 1.00235 1.20798 0.88125 0.82331 0.86013 1.90490 1.50303 1.63408 1.46545 1.41927 1.31629 1.05987 1.41502 1.19644 1.11910 0.91163 1.23666 0.90211 1.26041 1.00463 0.96235 0.98525 1.69666 1.39702 1.06988 1.39837 0.84997 0.77902 0.77132 0.78368 1.19800 1.19537 1.19529 1.22497 0.94572 0.88676 0.95189 1.48367 1.49352 1.30184 1.04695 1.16419 0.79897 0.83006 0.80610 1.90790 1.39979 1.28678 1.83376 1.22601 1.03726 0.97746 0.95521 1.29271 1.05822 1.08120 0.95711 1.81174 1.26531 1.07207 1.15731 1.78422 1.25566 1.27201 1.00601 1.71792 1.10083 1.06065 1.22141 0.92676 0.89135 0.92493 0.89298 0.87283 0.82438 0.88478 0.91186 0.77048 0.91315 0.91505 0.89323 0.75051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.07 71.98 0.65 -2.02 16 2 C 0.13 2.60 3.48 45.34 0.16 2.76 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -2.13 5.97 31.78 0.19 -1.94 16 5 C 0.08 1.76 3.31 46.31 0.15 1.92 16 6 H 0.07 1.50 7.92 -2.39 -0.02 1.49 16 7 N -0.67 -20.15 6.00 -488.39 -2.93 -23.08 16 8 C 0.07 2.24 6.04 85.55 0.52 2.75 16 9 C 0.44 20.95 7.82 87.65 0.69 21.64 16 10 O -0.62 -34.23 15.78 -3.07 -0.05 -34.28 16 11 N -0.57 -29.70 5.29 -306.99 -1.62 -31.32 16 12 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 13 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 14 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 15 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 16 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.11 2.92 5.73 86.86 0.50 3.42 16 21 N -0.59 -14.08 3.08 -791.88 -2.44 -16.52 16 22 C 0.62 15.51 7.62 86.67 0.66 16.17 16 23 O -0.55 -15.28 15.70 -4.04 -0.06 -15.34 16 24 C -0.05 -1.08 6.76 41.36 0.28 -0.80 16 25 C -0.23 -3.28 11.21 67.76 0.76 -2.52 16 26 S 0.56 6.61 23.38 -56.49 -1.32 5.29 16 27 N -0.34 -7.71 12.49 37.02 0.46 -7.25 16 28 N -0.23 -5.92 8.51 -50.34 -0.43 -6.35 16 29 H 0.05 1.14 6.75 -2.39 -0.02 1.13 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.11 1.47 7.83 -2.39 -0.02 1.45 16 34 H 0.35 10.79 8.23 -89.69 -0.74 10.05 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 37 H 0.40 19.58 7.90 -92.71 -0.73 18.84 16 38 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.09 2.44 6.07 -2.39 -0.01 2.42 16 41 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -74.44 361.50 -0.62 -75.06 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.37 Total: 35.63 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 5.83 Total: 22.82 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -6.68 Total: -134.44 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.11 Total: -49.62 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.32 Total: 5.29 kcal Total: -74.44 -0.62 -75.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507316615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.303 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds