Wall clock time and date at job start Tue Mar 31 2020 22:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33319 * 126.81214 * 2 1 4 4 N 1.28510 * 109.43763 * 179.97438 * 3 2 1 5 5 N 1.28722 * 110.64279 * 359.75225 * 4 3 2 6 6 H 0.96993 * 126.04099 * 180.26085 * 5 4 3 7 7 C 1.37007 * 126.81239 * 179.97438 * 2 1 3 8 8 C 1.47229 * 127.19286 * 0.02562 * 7 2 1 9 9 O 1.21621 * 119.99766 * 323.75556 * 8 7 2 10 10 N 1.34776 * 120.00019 * 143.75211 * 8 7 2 11 11 C 1.46969 * 120.59297 * 174.23095 * 10 8 7 12 12 C 1.53371 * 108.63555 * 125.04845 * 11 10 8 13 13 N 1.46970 * 108.63318 * 49.42525 * 12 11 10 14 14 C 1.34769 * 120.59164 * 124.75349 * 13 12 11 15 15 O 1.21283 * 119.99930 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00278 * 0.02562 * 14 13 12 17 17 S 1.81004 * 109.47210 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99971 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00161 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00273 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99742 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00360 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47039 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47086 * 119.99635 * 22 20 18 25 25 H 1.48494 * 109.46924 * 239.99584 * 22 20 18 26 26 C 1.46965 * 118.80906 * 304.77024 * 13 12 11 27 27 C 1.46962 * 120.59497 * 354.51006 * 10 8 7 28 28 H 1.08998 * 109.47268 * 270.03856 * 1 2 3 29 29 H 1.08999 * 109.47376 * 30.04386 * 1 2 3 30 30 H 1.09010 * 109.46717 * 150.04074 * 1 2 3 31 31 H 1.09000 * 109.61262 * 244.79944 * 11 10 8 32 32 H 1.09004 * 109.60747 * 5.30822 * 11 10 8 33 33 H 1.09003 * 109.60671 * 289.67985 * 12 11 10 34 34 H 1.09000 * 109.60876 * 169.16945 * 12 11 10 35 35 H 1.09003 * 109.47326 * 300.00387 * 16 14 13 36 36 H 1.08997 * 109.47076 * 59.99967 * 16 14 13 37 37 H 0.96998 * 120.00192 * 180.02562 * 21 20 18 38 38 H 1.08989 * 109.61288 * 295.48224 * 26 13 12 39 39 H 1.09002 * 109.74701 * 175.05022 * 26 13 12 40 40 H 1.09001 * 109.60777 * 354.69967 * 27 10 8 41 41 H 1.09006 * 109.60736 * 115.20640 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5323 0.6836 0.0005 5 7 3.6057 -0.6015 0.0061 6 1 4.4212 -1.1265 0.0112 7 6 2.3280 -1.0969 0.0005 8 6 1.9223 -2.5122 0.0006 9 8 0.9379 -2.8625 0.6230 10 7 2.6417 -3.4195 -0.6891 11 6 2.3248 -4.8517 -0.5973 12 6 2.0956 -5.3947 -2.0133 13 7 3.2150 -4.9701 -2.8658 14 6 3.9381 -5.8780 -3.5508 15 8 4.8598 -5.5158 -4.2509 16 6 3.6013 -7.3432 -3.4470 17 16 4.7444 -8.2993 -4.4743 18 6 4.1385 -9.9262 -4.1736 19 1 3.2959 -10.0754 -3.5145 20 6 4.7438 -11.0161 -4.7836 21 7 5.7704 -10.8343 -5.5873 22 14 4.1010 -12.7409 -4.4653 23 1 2.9476 -12.6749 -3.5321 24 1 3.6667 -13.3517 -5.7473 25 1 5.1778 -13.5672 -3.8630 26 6 3.5318 -3.5380 -2.9576 27 6 3.7609 -2.9950 -1.5417 28 1 -0.3634 0.0007 1.0276 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5133 31 1 3.1563 -5.3813 -0.1324 32 1 1.4219 -4.9891 -0.0023 33 1 1.1617 -4.9972 -2.4107 34 1 2.0500 -6.4833 -1.9846 35 1 3.6910 -7.6640 -2.4091 36 1 2.5799 -7.5065 -3.7907 37 1 6.1932 -11.5959 -6.0139 38 1 2.7003 -3.0084 -3.4224 39 1 4.4337 -3.3978 -3.5535 40 1 3.8066 -1.9063 -1.5703 41 1 4.6948 -3.3925 -1.1441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522424449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:09 Heat of formation + Delta-G solvation = 45.578184 kcal Electronic energy + Delta-G solvation = -26718.599537 eV Core-core repulsion = 22762.878698 eV Total energy + Delta-G solvation = -3955.720840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.92488 -40.77208 -39.42014 -37.25921 -34.89553 -34.10704 -32.99113 -32.50926 -32.00601 -29.79222 -28.52241 -27.56805 -25.58329 -24.88899 -24.35857 -23.07651 -22.23850 -20.81261 -19.63664 -18.42162 -17.80471 -17.37771 -17.02004 -16.87932 -16.28354 -15.94896 -15.78757 -15.53879 -14.87788 -14.80333 -14.34869 -14.18775 -14.04385 -13.57697 -13.50312 -13.45372 -13.07333 -12.99929 -12.62221 -12.43437 -12.23741 -12.08164 -11.86560 -11.76806 -11.58586 -11.13343 -11.10455 -11.01015 -10.82444 -10.68185 -9.88661 -9.82742 -9.67849 -9.56966 -9.15222 -8.67380 -8.33581 -6.60556 -6.29924 -4.01573 0.43623 1.71168 1.88388 2.05105 2.44277 2.76311 2.82916 3.16099 3.18439 3.25220 3.43640 3.59209 3.88983 4.11712 4.16150 4.25508 4.33819 4.48962 4.58398 4.65848 4.79565 4.82339 4.98314 5.05753 5.17908 5.19764 5.24940 5.28579 5.38602 5.40915 5.51110 5.57100 5.71402 5.74968 5.76584 5.96474 6.06465 6.28599 6.58004 7.25959 7.35528 7.51914 7.78239 8.26987 8.31358 9.15775 10.77501 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028605 B = 0.002227 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.623788 B =12568.935050 C =13186.178641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.056 3.944 3 N -0.265 5.265 4 N -0.044 5.044 5 N -0.376 5.376 6 H 0.453 0.547 7 C -0.067 4.067 8 C 0.598 3.402 9 O -0.508 6.508 10 N -0.605 5.605 11 C 0.098 3.902 12 C 0.095 3.905 13 N -0.622 5.622 14 C 0.537 3.463 15 O -0.512 6.512 16 C -0.152 4.152 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.280 1.280 26 C 0.103 3.897 27 C 0.080 3.920 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.269 0.731 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 18.469 12.228 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 N -0.132 5.132 4 N -0.025 5.025 5 N -0.105 5.105 6 H 0.302 0.698 7 C -0.201 4.201 8 C 0.382 3.618 9 O -0.381 6.381 10 N -0.339 5.339 11 C -0.025 4.025 12 C -0.029 4.029 13 N -0.360 5.360 14 C 0.325 3.675 15 O -0.385 6.385 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.021 4.021 27 C -0.044 4.044 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.954 20.078 11.400 24.113 hybrid contribution -1.265 -2.810 0.985 3.236 sum -8.219 17.267 12.385 22.784 Atomic orbital electron populations 1.20230 0.84800 1.03943 1.04073 1.22319 0.98598 0.86880 1.00528 1.74965 0.95142 1.25840 1.17277 1.78231 1.15968 0.92145 1.16153 1.45823 1.08765 1.07022 1.48893 0.69848 1.21944 0.85255 0.96340 1.16587 1.16807 0.83159 0.82237 0.79553 1.90870 1.25282 1.78774 1.43149 1.48002 1.32631 1.07532 1.45727 1.22194 1.03799 0.78509 0.97959 1.22138 0.89706 1.01953 0.89144 1.48066 1.33537 1.06065 1.48296 1.20428 0.81144 0.87600 0.78285 1.90707 1.28849 1.80685 1.38269 1.23564 1.06481 0.93961 1.06252 1.85437 1.39520 1.00235 1.58154 1.22880 1.19984 0.91633 1.33879 0.90823 1.25003 0.94680 0.99449 0.94454 1.70020 1.20577 1.31571 1.28032 0.86107 0.78779 0.82288 0.78273 1.19577 1.20520 1.20540 1.21793 1.03658 0.81568 0.95115 1.22468 0.89837 1.00118 0.91981 0.89483 0.89903 0.89951 0.89942 0.87129 0.90585 0.87475 0.89106 0.89060 0.92161 0.91019 0.87168 0.89629 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 9.91 36.01 0.36 -0.15 16 2 C 0.06 0.53 7.29 -82.39 -0.60 -0.07 16 3 N -0.27 -2.85 12.35 33.51 0.41 -2.43 16 4 N -0.04 -0.42 13.35 60.35 0.81 0.38 16 5 N -0.38 -2.63 5.66 33.31 0.19 -2.44 16 6 H 0.45 1.72 7.60 -190.33 -1.45 0.27 16 7 C -0.07 -0.57 6.10 -82.33 -0.50 -1.08 16 8 C 0.60 5.41 7.44 -12.61 -0.09 5.32 16 9 O -0.51 -5.87 15.73 5.26 0.08 -5.79 16 10 N -0.60 -4.68 2.95 -173.82 -0.51 -5.19 16 11 C 0.10 0.76 6.60 -3.59 -0.02 0.73 16 12 C 0.09 0.84 6.51 -3.59 -0.02 0.82 16 13 N -0.62 -7.29 2.95 -172.49 -0.51 -7.80 16 14 C 0.54 8.98 7.72 -10.99 -0.08 8.90 16 15 O -0.51 -10.52 15.27 5.55 0.08 -10.44 16 16 C -0.15 -2.79 4.50 36.01 0.16 -2.63 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -14.59 9.50 30.94 0.29 -14.30 16 19 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 22 Si 0.92 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.10 0.96 6.59 -3.60 -0.02 0.94 16 27 C 0.08 0.53 5.77 -3.60 -0.02 0.51 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.58 7.71 -51.92 -0.40 0.18 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 0.84 6.99 -51.93 -0.36 0.48 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.93 5.91 -51.93 -0.31 0.62 16 35 H 0.09 1.50 7.72 -51.91 -0.40 1.10 16 36 H 0.09 1.55 7.91 -51.92 -0.41 1.14 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.07 0.62 8.14 -51.94 -0.42 0.20 16 39 H 0.11 1.17 7.00 -51.93 -0.36 0.81 16 40 H 0.09 0.45 4.80 -51.93 -0.25 0.20 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -35.88 356.93 -7.25 -43.13 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.02 Total: -3.01 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.66 Total: 0.93 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.12 Total: -42.13 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.17 Total: -16.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.88 -7.25 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522424449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.706 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds