Wall clock time and date at job start Tue Mar 31 2020 22:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33319 * 126.81214 * 2 1 4 4 N 1.28510 * 109.43763 * 179.97438 * 3 2 1 5 5 N 1.28722 * 110.64279 * 359.75225 * 4 3 2 6 6 H 0.96993 * 126.04099 * 180.26085 * 5 4 3 7 7 C 1.37007 * 126.81239 * 179.97438 * 2 1 3 8 8 C 1.47229 * 127.19286 * 0.02562 * 7 2 1 9 9 O 1.21621 * 119.99766 * 323.75556 * 8 7 2 10 10 N 1.34776 * 120.00019 * 143.75211 * 8 7 2 11 11 C 1.46969 * 120.59297 * 174.23095 * 10 8 7 12 12 C 1.53371 * 108.63555 * 125.04845 * 11 10 8 13 13 N 1.46970 * 108.63318 * 49.42525 * 12 11 10 14 14 C 1.34769 * 120.59164 * 124.75349 * 13 12 11 15 15 O 1.21283 * 119.99930 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00278 * 0.02562 * 14 13 12 17 17 S 1.81004 * 109.47210 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99971 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00161 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00273 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99742 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00360 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47039 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47086 * 119.99635 * 22 20 18 25 25 H 1.48494 * 109.46924 * 239.99584 * 22 20 18 26 26 C 1.46965 * 118.80906 * 304.77024 * 13 12 11 27 27 C 1.46962 * 120.59497 * 354.51006 * 10 8 7 28 28 H 1.08998 * 109.47268 * 270.03856 * 1 2 3 29 29 H 1.08999 * 109.47376 * 30.04386 * 1 2 3 30 30 H 1.09010 * 109.46717 * 150.04074 * 1 2 3 31 31 H 1.09000 * 109.61262 * 244.79944 * 11 10 8 32 32 H 1.09004 * 109.60747 * 5.30822 * 11 10 8 33 33 H 1.09003 * 109.60671 * 289.67985 * 12 11 10 34 34 H 1.09000 * 109.60876 * 169.16945 * 12 11 10 35 35 H 1.09003 * 109.47326 * 300.00387 * 16 14 13 36 36 H 1.08997 * 109.47076 * 59.99967 * 16 14 13 37 37 H 0.96998 * 120.00192 * 180.02562 * 21 20 18 38 38 H 1.08989 * 109.61288 * 295.48224 * 26 13 12 39 39 H 1.09002 * 109.74701 * 175.05022 * 26 13 12 40 40 H 1.09001 * 109.60777 * 354.69967 * 27 10 8 41 41 H 1.09006 * 109.60736 * 115.20640 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5323 0.6836 0.0005 5 7 3.6057 -0.6015 0.0061 6 1 4.4212 -1.1265 0.0112 7 6 2.3280 -1.0969 0.0005 8 6 1.9223 -2.5122 0.0006 9 8 0.9379 -2.8625 0.6230 10 7 2.6417 -3.4195 -0.6891 11 6 2.3248 -4.8517 -0.5973 12 6 2.0956 -5.3947 -2.0133 13 7 3.2150 -4.9701 -2.8658 14 6 3.9381 -5.8780 -3.5508 15 8 4.8598 -5.5158 -4.2509 16 6 3.6013 -7.3432 -3.4470 17 16 4.7444 -8.2993 -4.4743 18 6 4.1385 -9.9262 -4.1736 19 1 3.2959 -10.0754 -3.5145 20 6 4.7438 -11.0161 -4.7836 21 7 5.7704 -10.8343 -5.5873 22 14 4.1010 -12.7409 -4.4653 23 1 2.9476 -12.6749 -3.5321 24 1 3.6667 -13.3517 -5.7473 25 1 5.1778 -13.5672 -3.8630 26 6 3.5318 -3.5380 -2.9576 27 6 3.7609 -2.9950 -1.5417 28 1 -0.3634 0.0007 1.0276 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5133 31 1 3.1563 -5.3813 -0.1324 32 1 1.4219 -4.9891 -0.0023 33 1 1.1617 -4.9972 -2.4107 34 1 2.0500 -6.4833 -1.9846 35 1 3.6910 -7.6640 -2.4091 36 1 2.5799 -7.5065 -3.7907 37 1 6.1932 -11.5959 -6.0139 38 1 2.7003 -3.0084 -3.4224 39 1 4.4337 -3.3978 -3.5535 40 1 3.8066 -1.9063 -1.5703 41 1 4.6948 -3.3925 -1.1441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522424449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:09 Heat of formation + Delta-G solvation = 18.990777 kcal Electronic energy + Delta-G solvation = -26719.752454 eV Core-core repulsion = 22762.878698 eV Total energy + Delta-G solvation = -3956.873756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.59970 -41.62123 -40.46797 -38.21491 -35.73471 -34.87218 -34.57708 -33.68197 -32.79764 -30.97992 -29.31786 -28.37224 -27.63784 -25.62012 -25.11852 -23.84811 -22.99211 -21.59794 -20.57767 -19.77917 -19.00281 -18.29227 -17.83830 -17.73004 -17.18772 -16.95976 -16.86814 -16.80874 -16.34025 -15.85712 -15.50402 -15.11633 -14.94298 -14.74398 -14.51663 -14.34645 -14.06607 -13.67180 -13.60762 -13.49501 -13.17159 -13.10219 -12.97090 -12.91951 -12.67068 -12.52272 -12.50559 -12.25424 -11.71313 -11.66821 -11.42270 -11.15616 -10.95766 -10.57754 -10.39891 -10.24814 -9.56758 -8.66256 -8.34610 -6.12070 -0.23437 1.02565 1.19349 1.25921 1.37348 1.41789 1.47701 1.52688 1.58009 1.82715 2.08415 2.27309 2.95709 3.00234 3.21270 3.26495 3.50665 3.57959 3.68294 3.69598 3.92068 3.98382 4.05808 4.13678 4.27656 4.29896 4.46656 4.51682 4.56639 4.64501 4.67457 4.73299 4.85756 4.87390 5.08017 5.22035 5.37077 5.43304 5.54939 5.89481 6.15476 6.20845 6.65707 7.06212 7.07685 7.09452 8.74600 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028605 B = 0.002227 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.623788 B =12568.935050 C =13186.178641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.048 3.952 3 N -0.291 5.291 4 N -0.056 5.056 5 N -0.356 5.356 6 H 0.466 0.534 7 C -0.068 4.068 8 C 0.605 3.395 9 O -0.532 6.532 10 N -0.600 5.600 11 C 0.102 3.898 12 C 0.091 3.909 13 N -0.608 5.608 14 C 0.539 3.461 15 O -0.559 6.559 16 C -0.127 4.127 17 S -0.152 6.152 18 C -0.542 4.542 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.275 1.275 26 C 0.099 3.901 27 C 0.088 3.912 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.270 0.730 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 18.382 13.900 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 N -0.158 5.158 4 N -0.037 5.037 5 N -0.088 5.088 6 H 0.318 0.682 7 C -0.203 4.203 8 C 0.390 3.610 9 O -0.407 6.407 10 N -0.333 5.333 11 C -0.021 4.021 12 C -0.032 4.032 13 N -0.343 5.343 14 C 0.327 3.673 15 O -0.437 6.437 16 C -0.278 4.278 17 S 0.075 5.925 18 C -0.690 4.690 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.025 4.025 27 C -0.035 4.035 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.551 20.023 13.104 25.411 hybrid contribution -0.829 -2.658 0.515 2.832 sum -9.380 17.365 13.619 23.979 Atomic orbital electron populations 1.20298 0.83634 1.04498 1.04534 1.22707 0.99563 0.86800 1.00196 1.74956 0.95633 1.26758 1.18432 1.78182 1.15807 0.93036 1.16638 1.45800 1.09041 1.06466 1.47444 0.68177 1.21870 0.85603 0.96012 1.16798 1.16755 0.82725 0.82282 0.79226 1.90865 1.26386 1.79132 1.44330 1.48004 1.32483 1.07476 1.45305 1.22200 1.04531 0.78305 0.97028 1.22374 0.88958 1.02529 0.89339 1.47990 1.32978 1.06389 1.46947 1.20116 0.81159 0.87512 0.78547 1.90697 1.31144 1.81173 1.40684 1.23393 1.04742 0.94088 1.05536 1.85611 1.43430 1.02213 1.61238 1.23220 1.20053 0.91953 1.33742 0.89735 1.26102 0.94798 1.04219 0.94060 1.70183 1.22253 1.32920 1.29457 0.84934 0.78528 0.76293 0.78397 1.17851 1.20185 1.20099 1.21968 1.03605 0.80016 0.96881 1.22465 0.89961 1.01050 0.90046 0.89025 0.88872 0.89836 0.89102 0.86526 0.89253 0.86972 0.86858 0.87338 0.92067 0.89859 0.88479 0.87978 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 9.91 71.24 0.71 -0.20 16 2 C 0.05 0.82 7.29 42.04 0.31 1.12 16 3 N -0.29 -5.92 12.35 -47.88 -0.59 -6.51 16 4 N -0.06 -0.99 13.35 37.02 0.49 -0.49 16 5 N -0.36 -4.23 5.66 -48.52 -0.27 -4.51 16 6 H 0.47 2.35 7.60 -219.90 -1.67 0.68 16 7 C -0.07 -1.02 6.10 40.40 0.25 -0.77 16 8 C 0.60 9.46 7.44 86.61 0.64 10.10 16 9 O -0.53 -11.15 15.73 -4.10 -0.06 -11.21 16 10 N -0.60 -7.52 2.95 -822.10 -2.42 -9.94 16 11 C 0.10 1.25 6.60 86.41 0.57 1.82 16 12 C 0.09 1.34 6.51 86.41 0.56 1.90 16 13 N -0.61 -12.97 2.95 -818.02 -2.41 -15.38 16 14 C 0.54 17.55 7.72 87.66 0.68 18.23 16 15 O -0.56 -23.34 15.27 -3.04 -0.05 -23.38 16 16 C -0.13 -4.50 4.50 71.24 0.32 -4.18 16 17 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 18 C -0.54 -29.48 9.50 67.95 0.65 -28.84 16 19 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 22 Si 1.00 42.13 29.55 68.60 2.03 44.16 16 23 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 26 C 0.10 1.65 6.59 86.42 0.57 2.22 16 27 C 0.09 0.93 5.77 86.42 0.50 1.43 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.04 7.71 -2.38 -0.02 1.02 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 1.41 6.99 -2.38 -0.02 1.40 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.58 5.91 -2.39 -0.01 1.57 16 35 H 0.11 3.51 7.72 -2.39 -0.02 3.49 16 36 H 0.11 3.48 7.91 -2.40 -0.02 3.46 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.98 7.00 -2.39 -0.02 1.96 16 40 H 0.10 0.78 4.80 -2.39 -0.01 0.76 16 41 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -79.72 356.93 1.47 -78.25 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -0.58 Total: 8.38 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 6.21 Total: 4.01 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -4.92 Total: -91.04 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.11 Total: -34.60 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -79.72 1.47 -78.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522424449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.239 kcal (2) G-P(sol) polarization free energy of solvation -79.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds