Wall clock time and date at job start Tue Mar 31 2020 22:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48495 * 109.47187 * 270.00465 * 3 2 1 5 5 H 1.48503 * 109.47052 * 30.00351 * 3 2 1 6 6 H 1.48498 * 109.46752 * 149.99870 * 3 2 1 7 7 C 1.38796 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99731 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99939 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99628 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46984 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99905 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.90889 * 336.25053 * 14 13 11 16 16 C 1.53784 * 113.61524 * 107.50411 * 14 13 11 17 17 C 1.53779 * 87.08045 * 89.11591 * 16 14 13 18 18 H 1.09001 * 113.69124 * 270.87427 * 17 16 14 19 19 N 1.46503 * 113.61483 * 139.98067 * 17 16 14 20 20 C 1.34781 * 119.99611 * 107.50299 * 19 17 16 21 21 O 1.21273 * 120.00337 * 359.97438 * 20 19 17 22 22 C 1.50701 * 119.99619 * 180.02562 * 20 19 17 23 23 N 1.46501 * 109.47244 * 179.97438 * 22 20 19 24 24 N 1.28601 * 124.61769 * 269.70252 * 23 22 20 25 25 C 1.31377 * 108.71632 * 179.82708 * 24 23 22 26 26 C 1.39680 * 105.90113 * 0.41074 * 25 24 23 27 27 N 1.28597 * 124.61926 * 89.99479 * 23 22 20 28 28 C 1.53779 * 87.08402 * 25.43458 * 17 16 14 29 29 H 0.96996 * 120.00074 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47447 * 60.00272 * 10 9 7 31 31 H 1.09000 * 109.47074 * 299.99882 * 10 9 7 32 32 H 0.96998 * 119.99607 * 0.02562 * 13 11 10 33 33 H 1.09002 * 113.61478 * 203.66556 * 16 14 13 34 34 H 1.09004 * 113.61162 * 334.56734 * 16 14 13 35 35 H 0.96998 * 120.00047 * 287.50318 * 19 17 16 36 36 H 1.08997 * 109.47035 * 300.00054 * 22 20 19 37 37 H 1.09003 * 109.47012 * 60.00128 * 22 20 19 38 38 H 1.08007 * 127.04922 * 180.16125 * 25 24 23 39 39 H 1.07998 * 127.04985 * 179.76435 * 26 25 24 40 40 H 1.08997 * 113.61646 * 220.02209 * 28 17 16 41 41 H 1.09000 * 113.61527 * 89.11480 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3441 -2.2961 -0.0014 13 7 6.0459 -4.4945 -0.0030 14 6 7.4909 -4.7355 -0.0026 15 1 8.0608 -3.8986 -0.4063 16 6 8.0283 -5.2555 1.3412 17 6 7.7383 -6.6726 0.8192 18 1 6.7311 -7.0242 1.0430 19 7 8.7726 -7.6496 1.1682 20 6 8.5260 -8.5864 2.1053 21 8 7.4481 -8.6202 2.6600 22 6 9.5902 -9.5911 2.4647 23 7 9.0803 -10.4931 3.5004 24 7 9.1951 -10.2921 4.7654 25 6 8.6266 -11.2896 5.4040 26 6 8.1459 -12.1522 4.4162 27 7 8.4618 -11.5965 3.2684 28 6 7.8887 -6.0962 -0.5986 29 1 -0.4850 0.8400 0.0004 30 1 3.6435 -3.4309 -0.8927 31 1 3.6441 -3.4320 0.8873 32 1 5.4293 -5.2432 -0.0036 33 1 9.0887 -5.0551 1.4944 34 1 7.4149 -4.9711 2.1962 35 1 9.6349 -7.6224 0.7248 36 1 9.8587 -10.1681 1.5799 37 1 10.4708 -9.0693 2.8393 38 1 8.5505 -11.4185 6.4737 39 1 7.6217 -13.0846 4.5653 40 1 7.1627 -6.4905 -1.3095 41 1 8.9110 -6.1256 -0.9757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524878260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:38 Heat of formation + Delta-G solvation = 68.512198 kcal Electronic energy + Delta-G solvation = -25295.941088 eV Core-core repulsion = 21341.214742 eV Total energy + Delta-G solvation = -3954.726346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.90262 -40.84618 -39.62004 -38.10336 -34.55858 -34.18392 -32.76465 -32.64865 -32.43947 -29.44662 -28.75315 -26.15536 -25.64369 -24.78229 -23.25014 -22.48384 -21.29538 -20.89827 -19.89406 -18.28203 -18.04289 -17.87073 -16.98821 -16.34388 -16.18988 -16.10947 -16.05216 -15.18081 -15.08322 -14.98956 -14.84453 -14.45660 -14.24908 -13.79406 -13.38308 -13.35106 -13.00618 -12.81173 -12.80247 -12.50160 -12.08050 -11.99856 -11.27761 -11.23789 -11.15825 -11.01898 -10.96099 -10.74450 -10.66634 -10.60418 -9.87238 -9.68672 -9.61451 -9.59035 -9.07663 -8.99962 -8.52211 -6.93304 -6.29448 -4.01612 1.32637 1.72141 1.91964 2.16319 2.62885 2.70517 2.87036 3.24063 3.32470 3.49552 3.60624 3.72049 3.89999 4.05056 4.16668 4.25347 4.32254 4.39335 4.54197 4.61373 4.68915 4.71317 5.00648 5.09475 5.16031 5.21186 5.22532 5.42822 5.46579 5.61147 5.69104 5.73345 5.76683 5.82104 5.94088 5.99773 6.21192 6.49819 6.82455 7.51365 7.54421 7.93552 7.95040 8.40800 8.41581 9.16492 10.79760 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.001759 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.088340 B =15911.999501 C =16661.320419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.517 6.517 13 N -0.721 5.721 14 C 0.129 3.871 15 H 0.111 0.889 16 C -0.164 4.164 17 C 0.122 3.878 18 H 0.117 0.883 19 N -0.713 5.713 20 C 0.501 3.499 21 O -0.515 6.515 22 C 0.123 3.877 23 N -0.147 5.147 24 N -0.282 5.282 25 C -0.022 4.022 26 C -0.023 4.023 27 N -0.283 5.283 28 C -0.152 4.152 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.401 0.599 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.404 0.596 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.199 0.801 39 H 0.199 0.801 40 H 0.084 0.916 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.723 -24.568 3.338 34.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.391 6.391 13 N -0.375 5.375 14 C 0.022 3.978 15 H 0.129 0.871 16 C -0.205 4.205 17 C 0.017 3.983 18 H 0.135 0.865 19 N -0.365 5.365 20 C 0.284 3.716 21 O -0.389 6.389 22 C -0.002 4.002 23 N -0.047 5.047 24 N -0.122 5.122 25 C -0.206 4.206 26 C -0.206 4.206 27 N -0.123 5.123 28 C -0.191 4.191 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.235 0.765 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.239 0.761 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.216 0.784 39 H 0.216 0.784 40 H 0.102 0.898 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 24.522 -22.059 2.756 33.099 hybrid contribution -1.106 -1.321 0.519 1.800 sum 23.415 -23.380 3.275 33.251 Atomic orbital electron populations 1.69940 1.05906 1.27775 1.48000 1.24720 0.94462 0.98974 0.93182 0.86729 0.81889 0.83282 0.79910 1.19208 1.19922 1.15939 1.22316 0.88226 0.97570 1.58842 0.89352 1.84773 1.09364 0.99888 1.97438 1.23291 0.93791 1.04541 1.05960 1.20316 0.90650 0.82158 0.74736 1.90698 1.58745 1.42125 1.47491 1.45691 1.06232 1.08266 1.77288 1.21533 0.82700 0.97538 0.96055 0.87109 1.23973 1.02521 0.94805 0.99168 1.22752 0.93123 0.86976 0.95404 0.86531 1.45847 1.18064 1.31811 1.40779 1.20532 0.88894 0.81938 0.80245 1.90828 1.24787 1.72067 1.51185 1.21671 0.96845 0.90942 0.90718 1.47276 1.39506 1.14462 1.03478 1.74061 1.21129 1.25058 0.91947 1.24827 1.01631 0.92059 1.02039 1.24818 1.04940 1.03058 0.87761 1.74042 1.11886 0.98343 1.28022 1.23755 1.03440 0.95660 0.96197 0.91927 0.88366 0.88338 0.76470 0.88747 0.90198 0.76119 0.84413 0.84395 0.78401 0.78406 0.89762 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.13 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.54 9.16 7.85 -10.98 -0.09 9.08 16 12 O -0.52 -10.76 15.46 5.56 0.09 -10.67 16 13 N -0.72 -8.57 5.26 -53.01 -0.28 -8.85 16 14 C 0.13 1.23 4.32 -67.12 -0.29 0.94 16 15 H 0.11 1.22 7.47 -51.93 -0.39 0.84 16 16 C -0.16 -1.42 7.68 -25.92 -0.20 -1.62 16 17 C 0.12 0.88 4.12 -67.12 -0.28 0.61 16 18 H 0.12 1.10 7.46 -51.93 -0.39 0.71 16 19 N -0.71 -3.73 5.36 -53.02 -0.28 -4.01 16 20 C 0.50 4.11 7.90 -10.98 -0.09 4.02 16 21 O -0.51 -7.11 16.03 5.56 0.09 -7.02 16 22 C 0.12 0.65 7.02 -5.19 -0.04 0.62 16 23 N -0.15 -1.41 3.44 -11.66 -0.04 -1.45 16 24 N -0.28 -2.92 12.05 30.68 0.37 -2.55 16 25 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 26 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 27 N -0.28 -2.87 12.05 30.67 0.37 -2.50 16 28 C -0.15 -0.89 7.58 -25.92 -0.20 -1.08 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 31 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.40 3.82 8.70 -40.82 -0.36 3.46 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 0.57 8.73 -40.82 -0.36 0.21 16 36 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.14 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.20 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.36 8.12 -51.93 -0.42 -0.06 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -41.26 373.33 -6.44 -47.70 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.29 Total: 0.48 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.15 Total: -2.44 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.91 Total: -45.21 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.18 Total: -17.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.26 -6.44 -47.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524878260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.214 kcal (2) G-P(sol) polarization free energy of solvation -41.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds