Wall clock time and date at job start Tue Mar 31 2020 22:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00322 * 2 1 4 4 H 1.48497 * 109.47151 * 239.99508 * 3 2 1 5 5 H 1.48500 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47412 * 119.99395 * 3 2 1 7 7 C 1.38798 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00271 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46995 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00315 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99683 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99923 * 179.97438 * 13 11 10 15 15 H 1.08993 * 112.90417 * 333.11346 * 14 13 11 16 16 C 1.53783 * 113.61346 * 104.36356 * 14 13 11 17 17 C 1.53783 * 87.08044 * 89.11632 * 16 14 13 18 18 H 1.09001 * 113.61315 * 139.97775 * 17 16 14 19 19 N 1.46498 * 113.61775 * 270.88223 * 17 16 14 20 20 C 1.34773 * 120.00464 * 182.68294 * 19 17 16 21 21 O 1.21282 * 119.99699 * 359.97438 * 20 19 17 22 22 C 1.50696 * 120.00083 * 179.97438 * 20 19 17 23 23 N 1.46499 * 109.46970 * 179.97438 * 22 20 19 24 24 C 1.34427 * 126.82243 * 125.00593 * 23 22 20 25 25 N 1.30834 * 108.08024 * 179.97438 * 24 23 22 26 26 C 1.33239 * 109.82850 * 359.97438 * 25 24 23 27 27 N 1.30723 * 108.94500 * 359.76024 * 26 25 24 28 28 C 1.53784 * 87.08223 * 25.43267 * 17 16 14 29 29 H 0.97002 * 120.00071 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47137 * 59.99887 * 10 9 7 31 31 H 1.09000 * 109.46946 * 299.99751 * 10 9 7 32 32 H 0.97005 * 120.00500 * 359.97438 * 13 11 10 33 33 H 1.09002 * 113.61366 * 203.66421 * 16 14 13 34 34 H 1.08992 * 113.61484 * 334.56990 * 16 14 13 35 35 H 0.97005 * 119.99849 * 2.68429 * 19 17 16 36 36 H 1.09000 * 109.47353 * 300.00141 * 22 20 19 37 37 H 1.09004 * 109.46756 * 60.00556 * 22 20 19 38 38 H 1.08002 * 125.96326 * 359.92213 * 24 23 22 39 39 H 1.08000 * 125.52732 * 180.02562 * 26 25 24 40 40 H 1.09000 * 113.61182 * 220.02383 * 28 17 16 41 41 H 1.08998 * 113.61453 * 89.11226 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7909 -5.5024 0.0000 13 7 2.8439 -6.3432 0.0003 14 6 2.3301 -7.7152 0.0003 15 1 1.3426 -7.7983 0.4539 16 6 2.4419 -8.4148 -1.3646 17 6 3.8391 -8.8813 -0.9228 18 1 4.0696 -9.9060 -1.2143 19 7 4.9073 -7.9379 -1.2619 20 6 6.1899 -8.2432 -0.9824 21 8 6.4597 -9.2989 -0.4497 22 6 7.2888 -7.2730 -1.3318 23 7 8.5811 -7.8331 -0.9288 24 6 9.6595 -8.0149 -1.7106 25 7 10.6089 -8.5374 -0.9776 26 6 10.1764 -8.7025 0.2718 27 7 8.9417 -8.2807 0.3527 28 6 3.3386 -8.7506 0.5254 29 1 -0.4850 0.8401 -0.0004 30 1 3.1243 -3.7314 0.8905 31 1 3.1243 -3.7314 -0.8895 32 1 3.8007 -6.1836 0.0006 33 1 1.7308 -9.2303 -1.4969 34 1 2.4585 -7.7253 -2.2086 35 1 4.6915 -7.0934 -1.6876 36 1 7.2887 -7.0958 -2.4073 37 1 7.1222 -6.3315 -0.8083 38 1 9.7296 -7.7727 -2.7607 39 1 10.7537 -9.1138 1.0866 40 1 4.0790 -8.3322 1.2072 41 1 2.8726 -9.6579 0.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525292038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:29 Heat of formation + Delta-G solvation = 54.745894 kcal Electronic energy + Delta-G solvation = -26017.793922 eV Core-core repulsion = 22062.470624 eV Total energy + Delta-G solvation = -3955.323298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40002 -40.96659 -39.40815 -38.01504 -34.44197 -34.03898 -32.84468 -32.49698 -31.50717 -29.33722 -28.56999 -26.13322 -25.58954 -24.63655 -22.73872 -22.31753 -21.36021 -20.38847 -20.00119 -18.00448 -17.84057 -17.77342 -16.78505 -16.29426 -16.17488 -15.94000 -15.54321 -15.24535 -15.10032 -14.86818 -14.75096 -14.45435 -14.14289 -13.97206 -13.35683 -13.30511 -12.96837 -12.74443 -12.63980 -12.21069 -12.17553 -12.04263 -11.25893 -11.11959 -11.09513 -10.85681 -10.76662 -10.66093 -10.34880 -10.09626 -9.91841 -9.90090 -9.60670 -9.48557 -9.13558 -9.04088 -8.33050 -6.58493 -6.28423 -3.99986 1.25857 1.75238 2.02504 2.55541 2.68929 2.89731 2.93075 3.18089 3.22201 3.24754 3.56779 3.88490 3.97685 4.04682 4.10233 4.13609 4.28414 4.44138 4.52123 4.54823 4.79962 4.88793 5.01044 5.06862 5.30770 5.35144 5.45715 5.48513 5.61253 5.66035 5.74393 5.79943 5.84257 5.99996 6.03380 6.10632 6.34674 6.54358 6.89606 7.51552 7.53783 7.64208 7.74958 8.27609 8.46120 9.16780 10.78867 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.002514 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.566559 B =11134.690846 C =13290.193815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.511 6.511 13 N -0.723 5.723 14 C 0.123 3.877 15 H 0.105 0.895 16 C -0.154 4.154 17 C 0.123 3.877 18 H 0.095 0.905 19 N -0.713 5.713 20 C 0.502 3.498 21 O -0.504 6.504 22 C 0.108 3.892 23 N -0.371 5.371 24 C 0.255 3.745 25 N -0.544 5.544 26 C 0.193 3.807 27 N -0.289 5.289 28 C -0.154 4.154 29 H 0.270 0.730 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.394 0.606 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.077 0.923 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.225 -17.654 -5.536 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.384 6.384 13 N -0.378 5.378 14 C 0.017 3.983 15 H 0.123 0.877 16 C -0.194 4.194 17 C 0.018 3.982 18 H 0.113 0.887 19 N -0.368 5.368 20 C 0.286 3.714 21 O -0.377 6.377 22 C -0.018 4.018 23 N -0.162 5.162 24 C -0.042 4.042 25 N -0.271 5.271 26 C -0.110 4.110 27 N -0.115 5.115 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.228 0.772 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.239 0.761 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.096 0.904 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.073 -18.717 -4.604 23.290 hybrid contribution 2.217 1.887 -0.453 2.947 sum 15.290 -16.830 -5.057 23.294 Atomic orbital electron populations 1.69999 1.05961 1.27668 1.46555 1.24992 0.95035 0.99052 0.94455 0.86223 0.79252 0.81219 0.78804 1.19933 1.20774 1.19917 1.22809 0.94830 0.91628 1.59338 0.90988 1.85439 1.04631 0.96279 1.96726 1.23545 1.06791 0.95348 1.04862 1.20370 0.86584 0.86205 0.74870 1.90713 1.15308 1.85467 1.46929 1.45826 1.09537 1.04743 1.77687 1.21831 0.99131 0.81312 0.96068 0.87652 1.23766 0.95157 1.01415 0.99013 1.21921 0.86459 0.93501 0.96271 0.88718 1.45766 1.05467 1.22467 1.63085 1.20434 0.83488 0.87967 0.79523 1.90820 1.82581 1.24226 1.40070 1.21608 0.79698 0.97028 1.03496 1.49962 1.11246 1.47481 1.07545 1.26103 0.82679 0.96006 0.99363 1.70539 1.30792 1.21943 1.03830 1.26045 0.90788 0.98924 0.95229 1.78216 1.15471 1.19044 0.98811 1.23727 0.98892 0.99883 0.96851 0.92052 0.89206 0.89277 0.77175 0.87479 0.90107 0.76066 0.84883 0.85922 0.76409 0.76684 0.90398 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 9 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 10 C -0.15 -2.84 6.16 36.01 0.22 -2.62 16 11 C 0.53 8.92 7.85 -10.98 -0.09 8.83 16 12 O -0.51 -10.73 15.50 5.56 0.09 -10.64 16 13 N -0.72 -8.18 4.96 -53.01 -0.26 -8.44 16 14 C 0.12 1.22 4.28 -67.11 -0.29 0.94 16 15 H 0.11 1.26 7.54 -51.93 -0.39 0.87 16 16 C -0.15 -1.17 7.57 -25.92 -0.20 -1.36 16 17 C 0.12 0.91 4.00 -67.12 -0.27 0.64 16 18 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 19 N -0.71 -4.43 4.34 -53.02 -0.23 -4.66 16 20 C 0.50 4.04 7.87 -10.99 -0.09 3.95 16 21 O -0.50 -6.50 15.69 5.56 0.09 -6.41 16 22 C 0.11 0.54 7.03 -5.20 -0.04 0.50 16 23 N -0.37 -3.16 3.40 -63.81 -0.22 -3.37 16 24 C 0.26 1.87 12.63 -90.65 -1.14 0.73 16 25 N -0.54 -5.50 11.19 -15.83 -0.18 -5.67 16 26 C 0.19 1.95 13.03 -91.81 -1.20 0.76 16 27 N -0.29 -3.36 11.84 29.29 0.35 -3.01 16 28 C -0.15 -1.29 7.62 -25.92 -0.20 -1.48 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 30 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 31 H 0.09 1.44 8.14 -51.92 -0.42 1.01 16 32 H 0.39 3.44 7.19 -40.82 -0.29 3.15 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 35 H 0.40 1.72 7.82 -40.82 -0.32 1.40 16 36 H 0.13 0.08 8.09 -51.93 -0.42 -0.34 16 37 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.22 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.22 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -40.22 372.51 -9.53 -49.74 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.19 Total: 1.15 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.08 Total: -1.57 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.19 Total: -49.89 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.17 Total: -17.06 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.22 -9.53 -49.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525292038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.488 kcal (2) G-P(sol) polarization free energy of solvation -40.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds