Wall clock time and date at job start Tue Mar 31 2020 22:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00322 * 2 1 4 4 H 1.48497 * 109.47151 * 239.99508 * 3 2 1 5 5 H 1.48500 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47412 * 119.99395 * 3 2 1 7 7 C 1.38798 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00271 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46995 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00315 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99683 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99923 * 179.97438 * 13 11 10 15 15 H 1.08993 * 112.90417 * 333.11346 * 14 13 11 16 16 C 1.53783 * 113.61346 * 104.36356 * 14 13 11 17 17 C 1.53783 * 87.08044 * 89.11632 * 16 14 13 18 18 H 1.09001 * 113.61315 * 139.97775 * 17 16 14 19 19 N 1.46498 * 113.61775 * 270.88223 * 17 16 14 20 20 C 1.34773 * 120.00464 * 182.68294 * 19 17 16 21 21 O 1.21282 * 119.99699 * 359.97438 * 20 19 17 22 22 C 1.50696 * 120.00083 * 179.97438 * 20 19 17 23 23 N 1.46499 * 109.46970 * 179.97438 * 22 20 19 24 24 C 1.34427 * 126.82243 * 125.00593 * 23 22 20 25 25 N 1.30834 * 108.08024 * 179.97438 * 24 23 22 26 26 C 1.33239 * 109.82850 * 359.97438 * 25 24 23 27 27 N 1.30723 * 108.94500 * 359.76024 * 26 25 24 28 28 C 1.53784 * 87.08223 * 25.43267 * 17 16 14 29 29 H 0.97002 * 120.00071 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47137 * 59.99887 * 10 9 7 31 31 H 1.09000 * 109.46946 * 299.99751 * 10 9 7 32 32 H 0.97005 * 120.00500 * 359.97438 * 13 11 10 33 33 H 1.09002 * 113.61366 * 203.66421 * 16 14 13 34 34 H 1.08992 * 113.61484 * 334.56990 * 16 14 13 35 35 H 0.97005 * 119.99849 * 2.68429 * 19 17 16 36 36 H 1.09000 * 109.47353 * 300.00141 * 22 20 19 37 37 H 1.09004 * 109.46756 * 60.00556 * 22 20 19 38 38 H 1.08002 * 125.96326 * 359.92213 * 24 23 22 39 39 H 1.08000 * 125.52732 * 180.02562 * 26 25 24 40 40 H 1.09000 * 113.61182 * 220.02383 * 28 17 16 41 41 H 1.08998 * 113.61453 * 89.11226 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7909 -5.5024 0.0000 13 7 2.8439 -6.3432 0.0003 14 6 2.3301 -7.7152 0.0003 15 1 1.3426 -7.7983 0.4539 16 6 2.4419 -8.4148 -1.3646 17 6 3.8391 -8.8813 -0.9228 18 1 4.0696 -9.9060 -1.2143 19 7 4.9073 -7.9379 -1.2619 20 6 6.1899 -8.2432 -0.9824 21 8 6.4597 -9.2989 -0.4497 22 6 7.2888 -7.2730 -1.3318 23 7 8.5811 -7.8331 -0.9288 24 6 9.6595 -8.0149 -1.7106 25 7 10.6089 -8.5374 -0.9776 26 6 10.1764 -8.7025 0.2718 27 7 8.9417 -8.2807 0.3527 28 6 3.3386 -8.7506 0.5254 29 1 -0.4850 0.8401 -0.0004 30 1 3.1243 -3.7314 0.8905 31 1 3.1243 -3.7314 -0.8895 32 1 3.8007 -6.1836 0.0006 33 1 1.7308 -9.2303 -1.4969 34 1 2.4585 -7.7253 -2.2086 35 1 4.6915 -7.0934 -1.6876 36 1 7.2887 -7.0958 -2.4073 37 1 7.1222 -6.3315 -0.8083 38 1 9.7296 -7.7727 -2.7607 39 1 10.7537 -9.1138 1.0866 40 1 4.0790 -8.3322 1.2072 41 1 2.8726 -9.6579 0.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525292038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:28 Heat of formation + Delta-G solvation = 25.434033 kcal Electronic energy + Delta-G solvation = -26019.064979 eV Core-core repulsion = 22062.470624 eV Total energy + Delta-G solvation = -3956.594356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99181 -41.75247 -40.39111 -39.01760 -35.02778 -34.89320 -34.56706 -33.81166 -32.14524 -30.68068 -29.15152 -27.66002 -26.81167 -25.42351 -23.42380 -22.88883 -22.23030 -21.31966 -20.80909 -19.79247 -18.48887 -18.36087 -17.91914 -17.17547 -16.94469 -16.86293 -16.76819 -16.46855 -16.13355 -15.91041 -15.70816 -15.57481 -15.01821 -14.77418 -14.59178 -14.44788 -13.95094 -13.79763 -13.35992 -13.29074 -13.15339 -12.97186 -12.85580 -12.77129 -12.60833 -12.06965 -11.75394 -11.47824 -11.33782 -11.11500 -11.00244 -10.96540 -10.76512 -10.52334 -10.26571 -10.24708 -10.03476 -8.64806 -8.33279 -6.10885 0.69167 1.26843 1.30262 1.44741 1.45114 1.48684 1.56829 1.59066 1.99218 2.07461 2.25753 2.29813 3.01202 3.32345 3.37126 3.42247 3.55076 3.61081 3.71529 3.81221 3.97676 4.09100 4.09327 4.17137 4.32274 4.41451 4.51678 4.65996 4.74068 4.78461 4.83506 4.96483 4.99498 5.25866 5.33068 5.43307 5.47473 5.62412 5.87961 6.20901 6.38475 6.46175 7.08438 7.09563 7.14863 7.22415 8.75411 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.002514 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.566559 B =11134.690846 C =13290.193815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.996 3.004 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.696 5.696 14 C 0.109 3.891 15 H 0.084 0.916 16 C -0.139 4.139 17 C 0.130 3.870 18 H 0.093 0.907 19 N -0.702 5.702 20 C 0.502 3.498 21 O -0.558 6.558 22 C 0.104 3.896 23 N -0.376 5.376 24 C 0.263 3.737 25 N -0.578 5.578 26 C 0.183 3.817 27 N -0.336 5.336 28 C -0.146 4.146 29 H 0.270 0.730 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.410 0.590 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.416 0.584 36 H 0.185 0.815 37 H 0.142 0.858 38 H 0.267 0.733 39 H 0.232 0.768 40 H 0.065 0.935 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.486 -17.279 -7.145 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.324 3.676 12 O -0.438 6.438 13 N -0.350 5.350 14 C 0.004 3.996 15 H 0.102 0.898 16 C -0.178 4.178 17 C 0.024 3.976 18 H 0.111 0.889 19 N -0.357 5.357 20 C 0.288 3.712 21 O -0.435 6.435 22 C -0.021 4.021 23 N -0.167 5.167 24 C -0.032 4.032 25 N -0.306 5.306 26 C -0.119 4.119 27 N -0.163 5.163 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.247 0.753 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.254 0.746 36 H 0.202 0.798 37 H 0.160 0.840 38 H 0.283 0.717 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.364 -18.347 -6.235 24.729 hybrid contribution 1.530 1.634 0.034 2.239 sum 16.894 -16.712 -6.201 24.559 Atomic orbital electron populations 1.70173 1.07975 1.28613 1.48043 1.26103 0.95918 1.03293 0.93849 0.85035 0.77809 0.75843 0.79519 1.18363 1.20733 1.18880 1.23170 0.95382 0.91951 1.58747 0.89707 1.85639 1.10518 0.99220 1.97055 1.23388 1.03636 0.94137 1.07037 1.20087 0.86225 0.86553 0.74730 1.90707 1.17421 1.85969 1.49692 1.45504 1.09717 1.04303 1.75510 1.22021 0.98639 0.80590 0.98368 0.89772 1.23702 0.95510 1.01371 0.97196 1.21824 0.86635 0.93842 0.95288 0.88858 1.45678 1.04887 1.22645 1.62442 1.20988 0.84269 0.87660 0.78291 1.90810 1.83368 1.26683 1.42598 1.22045 0.77133 0.96136 1.06773 1.50125 1.12533 1.47373 1.06701 1.27027 0.81599 0.93881 1.00723 1.70532 1.32402 1.23512 1.04154 1.26461 0.90764 0.98690 0.96033 1.78111 1.16255 1.20634 1.01276 1.23714 0.97949 0.99527 0.97335 0.92073 0.87572 0.86277 0.75270 0.85922 0.89891 0.74597 0.79805 0.84023 0.71729 0.75166 0.91666 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.54 13.22 21.65 0.29 -54.26 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.54 -29.58 9.50 67.95 0.65 -28.94 16 8 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 9 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 10 C -0.13 -4.59 6.16 71.24 0.44 -4.15 16 11 C 0.54 17.44 7.85 87.66 0.69 18.13 16 12 O -0.56 -23.85 15.50 -3.02 -0.05 -23.90 16 13 N -0.70 -14.39 4.96 -440.03 -2.18 -16.57 16 14 C 0.11 2.03 4.28 45.52 0.19 2.23 16 15 H 0.08 2.00 7.54 -2.39 -0.02 1.98 16 16 C -0.14 -1.79 7.57 31.12 0.24 -1.55 16 17 C 0.13 1.63 4.00 45.52 0.18 1.81 16 18 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 19 N -0.70 -6.67 4.34 -440.04 -1.91 -8.58 16 20 C 0.50 6.86 7.87 87.66 0.69 7.55 16 21 O -0.56 -13.85 15.69 -3.03 -0.05 -13.90 16 22 C 0.10 0.66 7.03 85.63 0.60 1.26 16 23 N -0.38 -5.55 3.40 -355.81 -1.21 -6.76 16 24 C 0.26 3.16 12.63 180.36 2.28 5.44 16 25 N -0.58 -11.01 11.19 -203.99 -2.28 -13.29 16 26 C 0.18 3.68 13.03 180.76 2.36 6.03 16 27 N -0.34 -7.62 11.84 -61.24 -0.72 -8.35 16 28 C -0.15 -2.22 7.62 31.12 0.24 -1.98 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.11 3.41 8.14 -2.40 -0.02 3.39 16 31 H 0.12 3.48 8.14 -2.40 -0.02 3.46 16 32 H 0.41 5.93 7.19 -92.70 -0.67 5.26 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 35 H 0.42 1.93 7.82 -92.70 -0.73 1.21 16 36 H 0.18 -0.80 8.09 -2.39 -0.02 -0.82 16 37 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.27 0.02 8.06 -2.91 -0.02 0.00 16 39 H 0.23 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -92.79 372.51 1.46 -91.34 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.30 Total: 12.42 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 9.01 Total: 7.03 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -8.02 Total: -107.81 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.09 Total: -37.80 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -92.79 1.46 -91.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525292038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.770 kcal (2) G-P(sol) polarization free energy of solvation -92.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds