Wall clock time and date at job start Tue Mar 31 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48506 * 109.46644 * 269.99615 * 3 2 1 5 5 H 1.48496 * 109.47214 * 29.99452 * 3 2 1 6 6 H 1.48499 * 109.47190 * 150.00144 * 3 2 1 7 7 C 1.38794 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00241 * 0.02562 * 7 2 1 9 9 S 1.76207 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00005 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47017 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00310 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00205 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49439 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11621 * 204.63969 * 14 13 11 16 16 C 1.53004 * 113.73988 * 221.94050 * 15 14 13 17 17 N 1.46501 * 109.46877 * 183.07251 * 16 15 14 18 18 C 1.34779 * 119.99823 * 180.02562 * 17 16 15 19 19 O 1.21275 * 119.99833 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99677 * 180.02562 * 18 17 16 21 21 C 1.50702 * 109.46679 * 180.02562 * 20 18 17 22 22 N 1.33239 * 125.52265 * 269.68940 * 21 20 18 23 23 C 1.30831 * 109.82755 * 179.85754 * 22 21 20 24 24 N 1.34427 * 108.07837 * 0.40162 * 23 22 21 25 25 H 0.97005 * 126.82404 * 179.78602 * 24 23 22 26 26 N 1.30710 * 125.52841 * 89.99788 * 21 20 18 27 27 C 1.47925 * 134.49772 * 0.02562 * 13 11 10 28 28 H 0.97009 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47089 * 59.99588 * 10 9 7 30 30 H 1.09001 * 109.47212 * 299.99988 * 10 9 7 31 31 H 1.09003 * 113.77049 * 90.34034 * 14 13 11 32 32 H 1.08993 * 113.77081 * 318.93795 * 14 13 11 33 33 H 1.09002 * 113.74276 * 90.74001 * 15 14 13 34 34 H 1.08998 * 109.46823 * 303.07465 * 16 15 14 35 35 H 1.08998 * 109.46745 * 63.07477 * 16 15 14 36 36 H 0.97000 * 119.99767 * 0.02562 * 17 16 15 37 37 H 1.09002 * 109.46960 * 299.99752 * 20 18 17 38 38 H 1.08997 * 109.47295 * 59.99878 * 20 18 17 39 39 H 1.08010 * 125.96031 * 180.12492 * 23 22 21 40 40 H 1.09006 * 113.87423 * 41.10256 * 27 13 11 41 41 H 1.08997 * 113.77410 * 269.60428 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5729 -3.2326 0.0008 12 8 6.3440 -2.2964 0.0014 13 7 6.0456 -4.4948 0.0011 14 6 7.3942 -5.0942 0.0016 15 6 6.7320 -6.3277 -0.6388 16 6 7.2321 -7.6586 -0.0732 17 7 6.5985 -8.7648 -0.7952 18 6 6.8898 -10.0389 -0.4659 19 8 7.6767 -10.2695 0.4276 20 6 6.2385 -11.1768 -1.2090 21 6 6.7300 -12.4876 -0.6510 22 7 7.7939 -13.1629 -1.0838 23 6 7.9416 -14.2563 -0.3807 24 7 6.9509 -14.3059 0.5265 25 1 6.7998 -15.0021 1.1850 26 7 6.1785 -13.1492 0.3322 27 6 5.4211 -5.8358 0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4314 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 7.7930 -5.2780 0.9993 32 1 8.1013 -4.5855 -0.6535 33 1 6.7239 -6.3054 -1.7285 34 1 8.3139 -7.7199 -0.1912 35 1 6.9777 -7.7222 0.9848 36 1 5.9695 -8.5802 -1.5101 37 1 5.1565 -11.1153 -1.0917 38 1 6.4935 -11.1133 -2.2668 39 1 8.7208 -14.9930 -0.5099 40 1 4.5541 -5.9187 -0.6544 41 1 5.2415 -6.2369 0.9986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530915149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:58 Heat of formation + Delta-G solvation = 52.763642 kcal Electronic energy + Delta-G solvation = -24926.170310 eV Core-core repulsion = 20970.761055 eV Total energy + Delta-G solvation = -3955.409255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.55808 -40.55139 -39.69191 -37.71729 -34.98720 -33.79296 -32.45439 -32.18445 -31.22516 -29.88113 -28.62712 -26.41059 -25.79245 -25.43624 -23.29542 -21.74316 -21.30177 -20.25720 -19.16833 -18.81191 -17.79799 -17.54110 -16.87313 -16.69483 -16.15608 -15.83781 -15.58522 -15.34062 -15.26426 -14.93398 -14.49310 -14.08862 -13.90780 -13.72312 -13.62061 -13.03144 -12.87616 -12.83046 -12.67294 -12.53759 -12.19045 -12.00403 -11.65684 -11.27450 -11.14480 -11.01780 -10.68454 -10.62870 -10.51296 -10.36337 -10.03647 -9.86523 -9.54439 -9.44859 -9.01761 -8.71658 -8.51861 -6.94035 -6.30287 -4.02436 1.15027 2.15689 2.25868 2.30784 2.53902 2.85887 2.93325 3.08985 3.32265 3.49885 3.55454 3.59581 3.96399 4.13007 4.31034 4.33825 4.41071 4.43444 4.54415 4.74703 4.79210 4.86722 4.99421 5.04813 5.08839 5.20578 5.24174 5.30497 5.38864 5.49346 5.71135 5.72255 5.82484 5.89833 5.90778 5.99166 6.01191 6.55247 7.04533 7.60281 7.68777 7.81446 7.92661 8.39428 8.40024 9.15871 10.78838 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.001607 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.942253 B =17414.229065 C =18189.371725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.116 4.116 11 C 0.554 3.446 12 O -0.517 6.517 13 N -0.651 5.651 14 C 0.120 3.880 15 C -0.138 4.138 16 C 0.130 3.870 17 N -0.728 5.728 18 C 0.522 3.478 19 O -0.529 6.529 20 C -0.050 4.050 21 C 0.246 3.754 22 N -0.535 5.535 23 C 0.264 3.736 24 N -0.483 5.483 25 H 0.443 0.557 26 N -0.303 5.303 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.224 0.776 40 H 0.086 0.914 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.907 -30.824 -2.942 34.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.266 4.266 11 C 0.344 3.656 12 O -0.391 6.391 13 N -0.390 5.390 14 C -0.004 4.004 15 C -0.157 4.157 16 C 0.006 3.994 17 N -0.381 5.381 18 C 0.307 3.693 19 O -0.405 6.405 20 C -0.092 4.092 21 C -0.037 4.037 22 N -0.263 5.263 23 C -0.035 4.035 24 N -0.201 5.201 25 H 0.288 0.712 26 N -0.132 5.132 27 C -0.017 4.017 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.240 0.760 40 H 0.105 0.895 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.940 -28.870 -2.206 33.052 hybrid contribution -1.069 -0.964 0.150 1.447 sum 14.870 -29.833 -2.056 33.397 Atomic orbital electron populations 1.69939 1.05901 1.27780 1.48007 1.24704 0.94449 0.98952 0.93135 0.86737 0.81905 0.83272 0.79960 1.19173 1.19897 1.15938 1.22304 0.88174 0.97552 1.58887 0.89385 1.84807 1.09393 0.99981 1.97427 1.23214 0.93572 1.04193 1.05661 1.20009 0.90459 0.80326 0.74825 1.90714 1.58949 1.40967 1.48471 1.50013 1.08865 1.04403 1.75731 1.23004 0.87208 0.89325 1.00821 1.23471 0.97046 0.93330 1.01854 1.21333 0.98147 0.83430 0.96471 1.45881 1.47622 1.05297 1.39285 1.20180 0.81966 0.83519 0.83654 1.90754 1.34638 1.84362 1.30744 1.19890 1.02218 0.85716 1.01385 1.23275 0.91349 0.96703 0.92375 1.70355 1.19652 1.06253 1.30080 1.26085 0.93416 0.96825 0.87218 1.48088 1.22060 1.19767 1.30153 0.71188 1.77990 1.18759 0.96518 1.19928 1.23379 0.96796 0.80457 1.01048 0.91924 0.88628 0.88598 0.89615 0.89642 0.87073 0.90592 0.90679 0.76100 0.86163 0.85756 0.76027 0.89516 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.28 5.91 36.00 0.21 -2.07 16 11 C 0.55 10.17 8.08 -10.99 -0.09 10.08 16 12 O -0.52 -11.54 16.59 5.55 0.09 -11.45 16 13 N -0.65 -8.44 3.62 -178.05 -0.64 -9.09 16 14 C 0.12 1.13 8.40 -2.97 -0.02 1.11 16 15 C -0.14 -0.88 3.93 -89.69 -0.35 -1.23 16 16 C 0.13 0.83 5.51 -4.04 -0.02 0.81 16 17 N -0.73 -4.08 5.56 -60.29 -0.33 -4.41 16 18 C 0.52 4.42 7.82 -10.98 -0.09 4.33 16 19 O -0.53 -7.00 16.03 5.56 0.09 -6.91 16 20 C -0.05 -0.31 6.33 -29.03 -0.18 -0.49 16 21 C 0.25 2.31 6.63 -156.86 -1.04 1.27 16 22 N -0.54 -4.91 11.19 -11.97 -0.13 -5.05 16 23 C 0.26 1.43 13.13 -90.66 -1.19 0.24 16 24 N -0.48 -2.77 7.45 29.53 0.22 -2.55 16 25 H 0.44 0.86 8.96 -182.33 -1.63 -0.78 16 26 N -0.30 -2.92 12.80 32.42 0.41 -2.50 16 27 C 0.11 0.88 8.19 -2.77 -0.02 0.86 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 30 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 31 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.55 7.88 -51.93 -0.41 0.15 16 36 H 0.40 1.08 8.47 -40.82 -0.35 0.74 16 37 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.22 0.04 8.06 -52.48 -0.42 -0.39 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -42.68 374.77 -9.77 -52.45 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.60 Total: -4.82 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.58 Total: 2.92 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.30 Total: -49.28 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -42.68 -9.77 -52.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530915149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.215 kcal (2) G-P(sol) polarization free energy of solvation -42.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds