Wall clock time and date at job start Tue Mar 31 2020 22:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48506 * 109.46644 * 269.99615 * 3 2 1 5 5 H 1.48496 * 109.47214 * 29.99452 * 3 2 1 6 6 H 1.48499 * 109.47190 * 150.00144 * 3 2 1 7 7 C 1.38794 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00241 * 0.02562 * 7 2 1 9 9 S 1.76207 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00005 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47017 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00310 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00205 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49439 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11621 * 204.63969 * 14 13 11 16 16 C 1.53004 * 113.73988 * 221.94050 * 15 14 13 17 17 N 1.46501 * 109.46877 * 183.07251 * 16 15 14 18 18 C 1.34779 * 119.99823 * 180.02562 * 17 16 15 19 19 O 1.21275 * 119.99833 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99677 * 180.02562 * 18 17 16 21 21 C 1.50702 * 109.46679 * 180.02562 * 20 18 17 22 22 N 1.33239 * 125.52265 * 269.68940 * 21 20 18 23 23 C 1.30831 * 109.82755 * 179.85754 * 22 21 20 24 24 N 1.34427 * 108.07837 * 0.40162 * 23 22 21 25 25 H 0.97005 * 126.82404 * 179.78602 * 24 23 22 26 26 N 1.30710 * 125.52841 * 89.99788 * 21 20 18 27 27 C 1.47925 * 134.49772 * 0.02562 * 13 11 10 28 28 H 0.97009 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47089 * 59.99588 * 10 9 7 30 30 H 1.09001 * 109.47212 * 299.99988 * 10 9 7 31 31 H 1.09003 * 113.77049 * 90.34034 * 14 13 11 32 32 H 1.08993 * 113.77081 * 318.93795 * 14 13 11 33 33 H 1.09002 * 113.74276 * 90.74001 * 15 14 13 34 34 H 1.08998 * 109.46823 * 303.07465 * 16 15 14 35 35 H 1.08998 * 109.46745 * 63.07477 * 16 15 14 36 36 H 0.97000 * 119.99767 * 0.02562 * 17 16 15 37 37 H 1.09002 * 109.46960 * 299.99752 * 20 18 17 38 38 H 1.08997 * 109.47295 * 59.99878 * 20 18 17 39 39 H 1.08010 * 125.96031 * 180.12492 * 23 22 21 40 40 H 1.09006 * 113.87423 * 41.10256 * 27 13 11 41 41 H 1.08997 * 113.77410 * 269.60428 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5729 -3.2326 0.0008 12 8 6.3440 -2.2964 0.0014 13 7 6.0456 -4.4948 0.0011 14 6 7.3942 -5.0942 0.0016 15 6 6.7320 -6.3277 -0.6388 16 6 7.2321 -7.6586 -0.0732 17 7 6.5985 -8.7648 -0.7952 18 6 6.8898 -10.0389 -0.4659 19 8 7.6767 -10.2695 0.4276 20 6 6.2385 -11.1768 -1.2090 21 6 6.7300 -12.4876 -0.6510 22 7 7.7939 -13.1629 -1.0838 23 6 7.9416 -14.2563 -0.3807 24 7 6.9509 -14.3059 0.5265 25 1 6.7998 -15.0021 1.1850 26 7 6.1785 -13.1492 0.3322 27 6 5.4211 -5.8358 0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4314 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 7.7930 -5.2780 0.9993 32 1 8.1013 -4.5855 -0.6535 33 1 6.7239 -6.3054 -1.7285 34 1 8.3139 -7.7199 -0.1912 35 1 6.9777 -7.7222 0.9848 36 1 5.9695 -8.5802 -1.5101 37 1 5.1565 -11.1153 -1.0917 38 1 6.4935 -11.1133 -2.2668 39 1 8.7208 -14.9930 -0.5099 40 1 4.5541 -5.9187 -0.6544 41 1 5.2415 -6.2369 0.9986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530915149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:57 Heat of formation + Delta-G solvation = 19.089729 kcal Electronic energy + Delta-G solvation = -24927.630520 eV Core-core repulsion = 20970.761055 eV Total energy + Delta-G solvation = -3956.869465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.04336 -41.44215 -40.47376 -38.94634 -35.68715 -34.68244 -34.29356 -32.73609 -32.31608 -30.76704 -29.52025 -27.88026 -27.16585 -26.43805 -23.75251 -22.35137 -22.03170 -20.91905 -20.35374 -19.54725 -19.25410 -18.25733 -17.97902 -17.46926 -17.18998 -16.87793 -16.66808 -16.49763 -16.14506 -16.00822 -15.67863 -15.32577 -14.92444 -14.71420 -14.41900 -14.31657 -14.09389 -13.69838 -13.50697 -13.38359 -13.17641 -13.06178 -13.01955 -12.83795 -12.65002 -12.33368 -11.87808 -11.85716 -11.26690 -11.17895 -11.06459 -10.99071 -10.90802 -10.59127 -10.55466 -10.05644 -9.78188 -9.02153 -8.52398 -6.23962 0.67763 0.94281 1.30740 1.42381 1.50173 1.53511 1.65707 1.73100 1.88209 1.95355 2.24369 2.36390 2.65891 2.85874 3.19794 3.29760 3.46558 3.71266 3.80834 3.92043 4.08565 4.16905 4.21468 4.23616 4.40331 4.48180 4.51534 4.59068 4.60658 4.63431 4.78154 4.84112 4.89736 5.23881 5.26413 5.39466 5.47071 5.69857 6.10154 6.27474 6.53173 6.58712 6.92785 7.04859 7.11869 7.28185 8.59828 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.001607 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.942253 B =17414.229065 C =18189.371725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.239 1.239 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.179 6.179 10 C -0.101 4.101 11 C 0.553 3.447 12 O -0.569 6.569 13 N -0.650 5.650 14 C 0.111 3.889 15 C -0.105 4.105 16 C 0.136 3.864 17 N -0.711 5.711 18 C 0.522 3.478 19 O -0.583 6.583 20 C -0.048 4.048 21 C 0.230 3.770 22 N -0.575 5.575 23 C 0.273 3.727 24 N -0.477 5.477 25 H 0.457 0.543 26 N -0.343 5.343 27 C 0.101 3.899 28 H 0.277 0.723 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.270 0.730 40 H 0.104 0.896 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.860 -32.554 -3.714 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.163 1.163 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.251 4.251 11 C 0.342 3.658 12 O -0.448 6.448 13 N -0.386 5.386 14 C -0.012 4.012 15 C -0.124 4.124 16 C 0.012 3.988 17 N -0.365 5.365 18 C 0.308 3.692 19 O -0.463 6.463 20 C -0.090 4.090 21 C -0.054 4.054 22 N -0.304 5.304 23 C -0.025 4.025 24 N -0.197 5.197 25 H 0.305 0.695 26 N -0.173 5.173 27 C -0.020 4.020 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.260 0.740 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.285 0.715 40 H 0.122 0.878 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.859 -30.673 -2.992 35.128 hybrid contribution -1.303 -0.696 0.408 1.533 sum 15.555 -31.370 -2.585 35.110 Atomic orbital electron populations 1.70012 1.07226 1.29033 1.49011 1.25532 0.95262 1.02158 0.92832 0.85885 0.80619 0.79697 0.80280 1.18563 1.18239 1.16312 1.22436 0.90035 0.96757 1.58434 0.91860 1.84750 1.06700 1.06161 1.97581 1.23164 0.95557 0.99391 1.07031 1.19661 0.89278 0.81733 0.75151 1.90687 1.59576 1.43064 1.51449 1.50073 1.11480 1.04033 1.73022 1.23333 0.85826 0.89988 1.02021 1.23221 0.94822 0.91862 1.02542 1.21194 0.98047 0.83382 0.96186 1.45730 1.47235 1.04321 1.39182 1.20565 0.81172 0.84528 0.82938 1.90731 1.37171 1.85181 1.33204 1.20047 1.03201 0.83658 1.02074 1.23818 0.91513 0.97634 0.92388 1.70355 1.20387 1.07844 1.31806 1.26997 0.93400 0.96473 0.85671 1.48046 1.21748 1.19302 1.30564 0.69480 1.77876 1.20551 0.98091 1.20812 1.23779 0.98248 0.77437 1.02578 0.91328 0.86956 0.87439 0.88419 0.89845 0.85159 0.90897 0.91390 0.74045 0.83922 0.83380 0.71454 0.87810 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.48 13.97 21.65 0.30 -55.18 16 2 C 0.05 2.80 5.50 84.86 0.47 3.27 16 3 Si 0.91 45.08 27.74 68.60 1.90 46.99 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.88 6.74 99.48 0.67 -11.20 16 7 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.14 18.55 -56.49 -1.05 -10.19 16 10 C -0.10 -3.86 5.91 71.23 0.42 -3.44 16 11 C 0.55 19.72 8.08 87.65 0.71 20.43 16 12 O -0.57 -25.39 16.59 -3.04 -0.05 -25.44 16 13 N -0.65 -15.43 3.62 -835.62 -3.02 -18.46 16 14 C 0.11 1.83 8.40 86.49 0.73 2.56 16 15 C -0.11 -0.99 3.93 -10.13 -0.04 -1.03 16 16 C 0.14 1.39 5.51 86.38 0.48 1.86 16 17 N -0.71 -6.03 5.56 -463.05 -2.57 -8.60 16 18 C 0.52 8.02 7.82 87.66 0.69 8.70 16 19 O -0.58 -15.18 16.03 -3.01 -0.05 -15.23 16 20 C -0.05 -0.51 6.33 29.10 0.18 -0.33 16 21 C 0.23 4.12 6.63 138.63 0.92 5.04 16 22 N -0.57 -9.94 11.19 -191.80 -2.15 -12.08 16 23 C 0.27 2.50 13.13 180.36 2.37 4.87 16 24 N -0.48 -4.97 7.45 -60.49 -0.45 -5.42 16 25 H 0.46 1.25 8.96 -213.09 -1.91 -0.66 16 26 N -0.34 -6.43 12.80 -51.33 -0.66 -7.09 16 27 C 0.10 1.34 8.19 86.42 0.71 2.05 16 28 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.85 7.88 -2.39 -0.02 0.84 16 36 H 0.42 0.70 8.47 -92.71 -0.79 -0.09 16 37 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.27 -0.71 8.06 -2.91 -0.02 -0.74 16 40 H 0.10 1.11 8.14 -2.38 -0.02 1.10 16 41 H 0.10 1.18 7.92 -2.39 -0.02 1.16 16 Total: -1.00 -95.98 374.77 -1.12 -97.11 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -1.64 Total: -0.24 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 8.31 Total: 13.82 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -8.54 Total: -106.82 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.10 Total: -40.67 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.19 kcal Total: -95.98 -1.12 -97.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530915149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.198 kcal (2) G-P(sol) polarization free energy of solvation -95.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds