Wall clock time and date at job start Tue Mar 31 2020 22:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35232 * 107.86400 * 179.83405 * 11 10 9 13 13 C 1.40421 * 107.86634 * 0.42961 * 12 11 10 14 14 N 1.40104 * 125.97199 * 179.71480 * 13 12 11 15 15 C 1.34779 * 120.00304 * 359.97438 * 14 13 12 16 16 O 1.21612 * 119.99815 * 359.97438 * 15 14 13 17 17 C 1.47489 * 119.99956 * 179.97438 * 15 14 13 18 18 C 1.36628 * 125.76448 * 179.71452 * 17 15 14 19 19 N 1.35082 * 106.79041 * 179.87797 * 18 17 15 20 20 C 1.40249 * 126.61384 * 180.14079 * 19 18 17 21 21 C 1.39248 * 120.48107 * 180.31022 * 20 19 18 22 22 C 1.38513 * 118.36427 * 179.97438 * 21 20 19 23 23 C 1.38270 * 119.22525 * 359.97438 * 22 21 20 24 24 N 1.31857 * 120.91112 * 0.02562 * 23 22 21 25 25 C 1.31820 * 121.79023 * 359.72208 * 24 23 22 26 26 N 1.40209 * 106.77256 * 0.37726 * 19 18 17 27 27 N 1.28746 * 108.39220 * 359.75878 * 26 19 18 28 28 N 1.31226 * 108.04953 * 359.73452 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08004 * 126.06548 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06760 * 180.13769 * 12 11 10 34 34 H 0.96998 * 119.99794 * 179.97438 * 14 13 12 35 35 H 1.08002 * 126.60859 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.82045 * 359.95102 * 21 20 19 37 37 H 1.07998 * 120.38586 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.54603 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.66404 * 180.29186 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9132 -0.6208 14 7 4.9601 -5.4619 -1.3038 15 6 5.5268 -6.6025 -0.8629 16 8 5.0894 -7.1552 0.1281 17 6 6.6774 -7.1804 -1.5823 18 6 7.3427 -8.3229 -1.2376 19 7 8.3207 -8.4961 -2.1531 20 6 9.2513 -9.5446 -2.1948 21 6 10.2149 -9.5944 -3.1988 22 6 11.1125 -10.6493 -3.1977 23 6 11.0236 -11.6103 -2.2076 24 7 10.0990 -11.5340 -1.2706 25 6 9.2289 -10.5445 -1.2325 26 7 8.2297 -7.4227 -3.0505 27 7 7.2524 -6.6689 -2.6844 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5907 -4.7507 1.7301 33 1 3.5580 -6.3463 1.0449 34 1 5.3093 -5.0208 -2.0940 35 1 7.1271 -8.9648 -0.3963 36 1 10.2610 -8.8295 -3.9599 37 1 11.8734 -10.7199 -3.9608 38 1 11.7206 -12.4353 -2.2020 39 1 8.4888 -10.5134 -0.4466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532200661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:38 Heat of formation + Delta-G solvation = 195.571536 kcal Electronic energy + Delta-G solvation = -26482.605389 eV Core-core repulsion = 22430.237549 eV Total energy + Delta-G solvation = -4052.367840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.98227 -40.91795 -40.67585 -39.15899 -35.69769 -34.92312 -33.67433 -33.18575 -31.66108 -31.05841 -30.44315 -29.41370 -26.53755 -25.43181 -25.15036 -23.83177 -22.83108 -22.49564 -21.44052 -20.54171 -19.87097 -19.00513 -17.79635 -17.24204 -17.18910 -16.76132 -16.72599 -16.33046 -15.80082 -15.34348 -15.15826 -14.71253 -14.61750 -14.39855 -13.99635 -13.95551 -13.77245 -13.24535 -13.00544 -12.73100 -12.47667 -12.32565 -12.15705 -11.96941 -11.84887 -11.16499 -10.81539 -10.60804 -10.52796 -10.40424 -10.24277 -10.14855 -10.06961 -9.82273 -9.38096 -9.00042 -8.57336 -8.23790 -7.56089 -6.57412 -4.31453 -0.33329 0.35301 1.03700 1.24847 1.28235 2.55380 2.60456 2.95073 2.98314 3.39172 3.41300 3.49992 3.52882 3.60209 3.68264 3.70049 3.79250 3.89079 4.14034 4.27873 4.40900 4.42714 4.52452 4.60047 4.80773 5.11154 5.16485 5.24693 5.31310 5.44748 5.55599 5.69680 5.98970 6.11895 6.36300 6.45686 6.56074 6.74572 7.05334 7.24380 7.31579 7.47241 7.69195 7.81516 8.05018 8.34744 8.51759 8.62062 9.36629 10.80252 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.001813 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.106380 B =15436.414866 C =16136.678572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.258 3.742 14 N -0.613 5.613 15 C 0.612 3.388 16 O -0.512 6.512 17 C -0.082 4.082 18 C 0.099 3.901 19 N -0.312 5.312 20 C 0.085 3.915 21 C -0.060 4.060 22 C -0.148 4.148 23 C 0.102 3.898 24 N -0.458 5.458 25 C 0.105 3.895 26 N -0.052 5.052 27 N -0.188 5.188 28 N -0.296 5.296 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.420 0.580 35 H 0.214 0.786 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.343 -24.462 -4.347 32.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.259 5.259 15 C 0.395 3.605 16 O -0.385 6.385 17 C -0.220 4.220 18 C -0.054 4.054 19 N -0.091 5.091 20 C -0.010 4.010 21 C -0.087 4.087 22 C -0.169 4.169 23 C -0.055 4.055 24 N -0.166 5.166 25 C -0.056 4.056 26 N -0.031 5.031 27 N -0.063 5.063 28 N -0.127 5.127 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.256 0.744 35 H 0.230 0.770 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 21.167 -22.103 -5.062 31.020 hybrid contribution 0.116 -1.908 0.294 1.934 sum 21.283 -24.011 -4.768 32.438 Atomic orbital electron populations 1.70854 1.06769 1.30415 1.45952 1.25920 0.96309 1.02804 0.93114 0.83422 0.74808 0.74548 0.76877 1.20535 1.21242 1.21096 1.22107 0.95420 0.90421 1.56713 0.91791 1.19785 0.86294 0.82802 0.98066 1.48828 1.23249 1.19506 1.18105 1.22570 1.00441 0.90096 0.96707 1.21525 1.02216 1.06321 1.01447 1.19014 0.91388 0.94401 0.94717 1.42097 1.29406 1.24134 1.30248 1.16461 0.80767 0.80005 0.83228 1.90772 1.62110 1.60709 1.24876 1.21291 1.03600 0.98305 0.98807 1.23403 0.88396 0.98310 0.95264 1.47523 1.22156 1.18931 1.20517 1.18750 0.92808 0.89232 1.00200 1.21508 0.91846 0.98784 0.96593 1.22211 0.99784 0.94263 1.00594 1.23060 0.94986 0.97985 0.89448 1.67858 1.03246 1.21595 1.23870 1.22769 0.97796 0.88529 0.96480 1.82110 1.15744 0.93325 1.11885 1.74715 1.02237 1.20158 1.09167 1.77396 1.03353 1.16010 1.15909 0.92287 0.93537 0.94670 0.81365 0.82005 0.74355 0.76955 0.82730 0.83087 0.81412 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.65 55.43 0.76 -25.61 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 25.08 29.90 -169.99 -5.08 20.00 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.61 -17.18 9.24 -34.44 -0.32 -17.50 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.29 5.57 -5.19 -0.03 6.26 16 10 N -0.32 -7.35 3.67 -62.56 -0.23 -7.58 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.50 9.60 -39.83 -0.38 -5.88 16 13 C 0.26 5.23 8.11 -154.43 -1.25 3.97 16 14 N -0.61 -10.09 5.44 -12.09 -0.07 -10.16 16 15 C 0.61 9.00 7.78 -12.49 -0.10 8.90 16 16 O -0.51 -8.24 13.99 5.27 0.07 -8.17 16 17 C -0.08 -0.98 6.99 -83.55 -0.58 -1.56 16 18 C 0.10 0.86 10.62 -16.70 -0.18 0.69 16 19 N -0.31 -2.74 3.82 -10.32 -0.04 -2.78 16 20 C 0.08 0.57 6.72 -83.43 -0.56 0.01 16 21 C -0.06 -0.32 9.80 -39.10 -0.38 -0.70 16 22 C -0.15 -0.49 10.11 -39.47 -0.40 -0.88 16 23 C 0.10 0.41 11.18 -17.53 -0.20 0.21 16 24 N -0.46 -2.89 10.35 -13.10 -0.14 -3.02 16 25 C 0.10 0.61 10.64 -17.35 -0.18 0.43 16 26 N -0.05 -0.58 13.20 60.35 0.80 0.22 16 27 N -0.19 -2.37 12.03 32.85 0.40 -1.97 16 28 N -0.30 -6.93 12.42 31.43 0.39 -6.54 16 29 H 0.27 7.60 7.22 -40.82 -0.29 7.30 16 30 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 32 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 33 H 0.16 2.94 5.91 -52.48 -0.31 2.63 16 34 H 0.42 6.29 8.51 -40.82 -0.35 5.95 16 35 H 0.21 1.07 7.15 -52.49 -0.38 0.69 16 36 H 0.16 0.76 7.82 -52.49 -0.41 0.35 16 37 H 0.15 0.07 8.06 -52.49 -0.42 -0.36 16 38 H 0.17 0.18 8.06 -52.48 -0.42 -0.24 16 39 H 0.17 0.61 6.84 -52.49 -0.36 0.25 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -35.50 354.42 -6.06 -41.55 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.40 Total: 3.42 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.86 Total: -4.69 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 1.87 Total: -57.45 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.50 -6.06 -41.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532200661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.126 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds