Wall clock time and date at job start Tue Mar 31 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35232 * 107.86400 * 179.83405 * 11 10 9 13 13 C 1.40421 * 107.86634 * 0.42961 * 12 11 10 14 14 N 1.40104 * 125.97199 * 179.71480 * 13 12 11 15 15 C 1.34779 * 120.00304 * 359.97438 * 14 13 12 16 16 O 1.21612 * 119.99815 * 359.97438 * 15 14 13 17 17 C 1.47489 * 119.99956 * 179.97438 * 15 14 13 18 18 C 1.36628 * 125.76448 * 179.71452 * 17 15 14 19 19 N 1.35082 * 106.79041 * 179.87797 * 18 17 15 20 20 C 1.40249 * 126.61384 * 180.14079 * 19 18 17 21 21 C 1.39248 * 120.48107 * 180.31022 * 20 19 18 22 22 C 1.38513 * 118.36427 * 179.97438 * 21 20 19 23 23 C 1.38270 * 119.22525 * 359.97438 * 22 21 20 24 24 N 1.31857 * 120.91112 * 0.02562 * 23 22 21 25 25 C 1.31820 * 121.79023 * 359.72208 * 24 23 22 26 26 N 1.40209 * 106.77256 * 0.37726 * 19 18 17 27 27 N 1.28746 * 108.39220 * 359.75878 * 26 19 18 28 28 N 1.31226 * 108.04953 * 359.73452 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08004 * 126.06548 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06760 * 180.13769 * 12 11 10 34 34 H 0.96998 * 119.99794 * 179.97438 * 14 13 12 35 35 H 1.08002 * 126.60859 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.82045 * 359.95102 * 21 20 19 37 37 H 1.07998 * 120.38586 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.54603 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.66404 * 180.29186 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9132 -0.6208 14 7 4.9601 -5.4619 -1.3038 15 6 5.5268 -6.6025 -0.8629 16 8 5.0894 -7.1552 0.1281 17 6 6.6774 -7.1804 -1.5823 18 6 7.3427 -8.3229 -1.2376 19 7 8.3207 -8.4961 -2.1531 20 6 9.2513 -9.5446 -2.1948 21 6 10.2149 -9.5944 -3.1988 22 6 11.1125 -10.6493 -3.1977 23 6 11.0236 -11.6103 -2.2076 24 7 10.0990 -11.5340 -1.2706 25 6 9.2289 -10.5445 -1.2325 26 7 8.2297 -7.4227 -3.0505 27 7 7.2524 -6.6689 -2.6844 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5907 -4.7507 1.7301 33 1 3.5580 -6.3463 1.0449 34 1 5.3093 -5.0208 -2.0940 35 1 7.1271 -8.9648 -0.3963 36 1 10.2610 -8.8295 -3.9599 37 1 11.8734 -10.7199 -3.9608 38 1 11.7206 -12.4353 -2.2020 39 1 8.4888 -10.5134 -0.4466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532200661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:37 Heat of formation + Delta-G solvation = 170.866569 kcal Electronic energy + Delta-G solvation = -26483.676677 eV Core-core repulsion = 22430.237549 eV Total energy + Delta-G solvation = -4053.439128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.75518 -42.29274 -41.27744 -40.43692 -36.52821 -36.29553 -35.53127 -33.59293 -32.93216 -32.13125 -31.25543 -31.01432 -28.30540 -26.30242 -25.81855 -25.07663 -24.23838 -23.12013 -22.67781 -21.94778 -21.10332 -19.89259 -19.23737 -18.48792 -18.16687 -17.66601 -17.55877 -17.11094 -16.97818 -16.48135 -16.29703 -15.82765 -15.71837 -15.51475 -15.11371 -15.06669 -14.94441 -14.37742 -14.17093 -13.92929 -13.76116 -13.52858 -13.27804 -13.22553 -12.89886 -12.77448 -12.61908 -12.08554 -11.95446 -11.72637 -11.26195 -11.03453 -11.00948 -10.77370 -10.76408 -10.69036 -9.93061 -9.85005 -9.23284 -8.77508 -6.55295 -0.86267 0.00860 0.18041 0.52454 0.62165 1.05261 1.23178 1.51154 1.57554 1.67204 1.79181 2.16372 2.27553 2.48782 2.60676 2.82102 2.99930 3.01638 3.28379 3.43373 3.55038 3.69593 3.84333 3.86225 4.06763 4.13196 4.15562 4.39965 4.52267 4.55784 4.69076 4.78837 4.82345 4.85397 4.94976 5.03015 5.15887 5.53733 5.55408 5.77338 5.92106 6.04668 6.27440 6.42110 6.54078 6.70635 6.80745 6.94163 7.19944 8.58977 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.001813 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.106380 B =15436.414866 C =16136.678572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.623 4.623 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.058 3.942 12 C -0.286 4.286 13 C 0.266 3.734 14 N -0.615 5.615 15 C 0.619 3.381 16 O -0.525 6.525 17 C -0.105 4.105 18 C 0.122 3.878 19 N -0.300 5.300 20 C 0.056 3.944 21 C -0.067 4.067 22 C -0.139 4.139 23 C 0.106 3.894 24 N -0.483 5.483 25 C 0.106 3.894 26 N -0.068 5.068 27 N -0.211 5.211 28 N -0.346 5.346 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.206 0.794 33 H 0.178 0.822 34 H 0.424 0.576 35 H 0.250 0.750 36 H 0.154 0.846 37 H 0.183 0.817 38 H 0.198 0.802 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.557 -26.552 -3.811 35.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.661 4.661 8 H 0.063 0.937 9 C 0.139 3.861 10 N -0.123 5.123 11 C -0.090 4.090 12 C -0.316 4.316 13 C 0.012 3.988 14 N -0.263 5.263 15 C 0.405 3.595 16 O -0.399 6.399 17 C -0.243 4.243 18 C -0.032 4.032 19 N -0.078 5.078 20 C -0.037 4.037 21 C -0.095 4.095 22 C -0.159 4.159 23 C -0.051 4.051 24 N -0.191 5.191 25 C -0.054 4.054 26 N -0.047 5.047 27 N -0.085 5.085 28 N -0.177 5.177 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.223 0.777 33 H 0.195 0.805 34 H 0.262 0.738 35 H 0.266 0.734 36 H 0.172 0.828 37 H 0.200 0.800 38 H 0.215 0.785 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 23.420 -24.248 -4.544 34.016 hybrid contribution -0.369 -1.548 0.094 1.594 sum 23.051 -25.795 -4.450 34.879 Atomic orbital electron populations 1.70946 1.07394 1.30193 1.47312 1.27243 0.96456 1.06001 0.92097 0.82890 0.74150 0.71225 0.77755 1.19903 1.19596 1.20285 1.22296 0.94680 0.92216 1.56872 0.93740 1.19445 0.86390 0.82719 0.97512 1.48599 1.23864 1.20244 1.19622 1.23248 1.00591 0.88564 0.96621 1.21777 1.01990 1.06690 1.01174 1.19355 0.91383 0.93365 0.94699 1.42257 1.28770 1.24838 1.30437 1.16747 0.80848 0.79003 0.82924 1.90738 1.62737 1.60870 1.25516 1.20962 1.03879 0.99877 0.99608 1.23901 0.86907 0.97132 0.95268 1.47609 1.22043 1.18557 1.19607 1.19011 0.93529 0.89411 1.01797 1.21731 0.91987 0.99480 0.96272 1.22546 0.99526 0.92902 1.00883 1.23652 0.94387 0.98553 0.88508 1.67933 1.04170 1.21944 1.25070 1.23047 0.97968 0.87920 0.96443 1.82043 1.15668 0.94175 1.12808 1.74685 1.02928 1.21101 1.09774 1.77306 1.04775 1.18157 1.17446 0.92926 0.92476 0.96532 0.77707 0.80451 0.73841 0.73371 0.82799 0.79956 0.78508 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 13.65 21.45 0.29 -53.97 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.56 16 3 Si 1.12 50.45 29.90 68.60 2.05 52.50 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.62 -35.87 9.24 25.60 0.24 -35.64 16 8 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.26 13.39 5.57 85.64 0.48 13.87 16 10 N -0.34 -16.16 3.67 -351.84 -1.29 -17.45 16 11 C 0.06 2.23 11.43 83.52 0.95 3.19 16 12 C -0.29 -10.84 9.60 22.11 0.21 -10.63 16 13 C 0.27 10.88 8.11 133.34 1.08 11.96 16 14 N -0.62 -20.49 5.44 -310.40 -1.69 -22.18 16 15 C 0.62 17.90 7.78 86.68 0.67 18.57 16 16 O -0.52 -16.25 13.99 -4.07 -0.06 -16.31 16 17 C -0.10 -2.43 6.99 40.81 0.29 -2.15 16 18 C 0.12 1.91 10.62 83.82 0.89 2.80 16 19 N -0.30 -4.88 3.82 -186.57 -0.71 -5.59 16 20 C 0.06 0.66 6.72 38.17 0.26 0.92 16 21 C -0.07 -0.60 9.80 22.58 0.22 -0.38 16 22 C -0.14 -0.50 10.11 22.34 0.23 -0.28 16 23 C 0.11 0.52 11.18 84.70 0.95 1.46 16 24 N -0.48 -4.91 10.35 -195.37 -2.02 -6.93 16 25 C 0.11 1.01 10.64 84.83 0.90 1.91 16 26 N -0.07 -1.50 13.20 37.02 0.49 -1.01 16 27 N -0.21 -5.32 12.03 -49.99 -0.60 -5.92 16 28 N -0.35 -16.63 12.42 -54.47 -0.68 -17.31 16 29 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 30 H 0.06 2.80 7.94 -2.39 -0.02 2.79 16 31 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 32 H 0.21 6.06 8.06 -2.91 -0.02 6.04 16 33 H 0.18 6.16 5.91 -2.91 -0.02 6.14 16 34 H 0.42 13.15 8.51 -92.71 -0.79 12.36 16 35 H 0.25 1.75 7.15 -2.91 -0.02 1.73 16 36 H 0.15 1.35 7.82 -2.91 -0.02 1.33 16 37 H 0.18 -0.55 8.06 -2.91 -0.02 -0.57 16 38 H 0.20 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.19 0.85 6.84 -2.91 -0.02 0.83 16 Total: -1.00 -78.25 354.42 4.06 -74.19 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.45 Total: 14.92 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 7.83 Total: 5.06 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -6.21 Total: -130.36 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.06 Total: -16.31 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -78.25 4.06 -74.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532200661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.054 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds