Wall clock time and date at job start Tue Mar 31 2020 22:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48495 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99411 * 3 2 1 6 6 H 1.48495 * 109.47167 * 59.99537 * 3 2 1 7 7 C 1.38798 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99957 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46775 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00533 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99437 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99564 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46896 * 180.02562 * 14 13 11 16 16 C 1.31003 * 119.99850 * 125.00305 * 15 14 13 17 17 C 1.50694 * 120.00016 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.47550 * 124.99989 * 17 16 15 19 19 C 1.34777 * 120.00199 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 18 23 23 N 1.33241 * 125.52584 * 269.68822 * 22 21 19 24 24 C 1.30830 * 109.82844 * 179.85606 * 23 22 21 25 25 N 1.34430 * 108.07674 * 0.40877 * 24 23 22 26 26 H 0.96998 * 126.81705 * 179.78890 * 25 24 23 27 27 N 1.30706 * 125.52779 * 90.00107 * 22 21 19 28 28 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47100 * 60.00214 * 10 9 7 30 30 H 1.09005 * 109.47306 * 300.00002 * 10 9 7 31 31 H 0.96995 * 120.00539 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46998 * 60.00485 * 14 13 11 33 33 H 1.09005 * 109.47213 * 300.00393 * 14 13 11 34 34 H 1.07995 * 120.00040 * 305.00181 * 15 14 13 35 35 H 1.08002 * 119.99922 * 359.97438 * 16 15 14 36 36 H 1.08998 * 109.47333 * 4.99583 * 17 16 15 37 37 H 1.09002 * 109.47271 * 245.00017 * 17 16 15 38 38 H 0.97000 * 119.99484 * 359.97438 * 18 17 16 39 39 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 40 40 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 41 41 H 1.08001 * 125.95877 * 180.12478 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5024 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3305 -7.7151 0.0019 15 6 3.4849 -8.6837 0.0018 16 6 3.5690 -9.6027 0.9317 17 6 4.7237 -10.5710 0.9319 18 7 5.4018 -10.5221 2.2296 19 6 6.4717 -11.3085 2.4609 20 8 6.8727 -12.0569 1.5949 21 6 7.1655 -11.2626 3.7980 22 6 8.3172 -12.2345 3.7998 23 7 8.2521 -13.5115 4.1744 24 6 9.4284 -14.0707 4.0511 25 7 10.2862 -13.1416 3.5948 26 1 11.2304 -13.2634 3.4092 27 7 9.5433 -11.9599 3.4395 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8010 -6.1835 0.0004 32 1 1.7210 -7.8756 -0.8874 33 1 1.7227 -7.8748 0.8926 34 1 4.2429 -8.6203 -0.7648 35 1 2.8111 -9.6659 1.6986 36 1 5.4263 -10.2988 0.1443 37 1 4.3518 -11.5801 0.7541 38 1 5.0813 -9.9232 2.9220 39 1 7.5400 -10.2550 3.9786 40 1 6.4597 -11.5341 4.5830 41 1 9.6694 -15.0982 4.2805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533385383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:01 Heat of formation + Delta-G solvation = 27.615880 kcal Electronic energy + Delta-G solvation = -24033.715331 eV Core-core repulsion = 20077.215587 eV Total energy + Delta-G solvation = -3956.499744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.58008 -40.00804 -39.20957 -36.69614 -34.91180 -33.82820 -32.90873 -32.43650 -32.14616 -30.16873 -29.36078 -27.29418 -25.49885 -24.03510 -23.26922 -21.69858 -20.82269 -20.48286 -19.80151 -18.82965 -17.88075 -17.65873 -16.72931 -16.26711 -16.15324 -16.00816 -15.69239 -15.36316 -15.23246 -14.81254 -14.26825 -14.21717 -14.05119 -13.90194 -13.68529 -13.18763 -12.90342 -12.79407 -12.61526 -12.53908 -12.35630 -11.80378 -11.54329 -11.07737 -11.02855 -10.76826 -10.72583 -10.53761 -10.43792 -10.16052 -9.92671 -9.81168 -9.50291 -9.31813 -9.08643 -8.90240 -8.24411 -6.51127 -6.22718 -3.93314 1.12239 1.48442 2.15854 2.22902 2.32464 2.99554 3.06304 3.08440 3.21040 3.28501 3.34100 3.58576 3.76361 4.10735 4.19437 4.24769 4.35975 4.49233 4.61477 4.84691 4.94942 4.98344 5.09308 5.12685 5.22833 5.27998 5.42871 5.55369 5.69450 5.75633 5.87242 5.87543 5.90415 6.12498 6.16109 6.25400 6.53270 6.57602 7.03204 7.58178 7.59067 7.66978 7.78174 8.34562 8.57518 9.22874 10.84799 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.001387 C = 0.001310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.915854 B =20185.873115 C =21369.525035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.147 3.853 15 C -0.140 4.140 16 C -0.165 4.165 17 C 0.151 3.849 18 N -0.726 5.726 19 C 0.522 3.478 20 O -0.531 6.531 21 C -0.049 4.049 22 C 0.247 3.753 23 N -0.535 5.535 24 C 0.264 3.736 25 N -0.483 5.483 26 H 0.443 0.557 27 N -0.303 5.303 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.405 0.595 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.364 -28.254 8.439 35.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.023 3.977 15 C -0.160 4.160 16 C -0.184 4.184 17 C 0.028 3.972 18 N -0.379 5.379 19 C 0.307 3.693 20 O -0.406 6.406 21 C -0.092 4.092 22 C -0.037 4.037 23 N -0.263 5.263 24 C -0.035 4.035 25 N -0.201 5.201 26 H 0.288 0.712 27 N -0.132 5.132 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.240 0.760 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 17.358 -28.487 7.682 34.232 hybrid contribution 2.995 1.191 0.176 3.228 sum 20.353 -27.296 7.858 34.943 Atomic orbital electron populations 1.70027 1.05957 1.27363 1.46936 1.24991 0.95019 0.99031 0.94517 0.86115 0.79584 0.81880 0.77909 1.19621 1.20560 1.20563 1.22912 0.94953 0.91633 1.58868 0.90858 1.85404 1.04921 0.96365 1.96719 1.23532 1.06594 0.95276 1.04984 1.20340 0.86502 0.86281 0.75103 1.90707 1.15372 1.85564 1.47475 1.45981 1.10075 1.05037 1.78064 1.20299 0.94137 0.80255 1.02964 1.23074 0.98827 0.95360 0.98697 1.22918 0.98652 0.96933 0.99946 1.20337 0.92281 0.99250 0.85329 1.45896 1.31235 1.43666 1.17056 1.20205 0.80163 0.79949 0.89012 1.90751 1.64620 1.38765 1.46497 1.19883 0.93362 0.98574 0.97349 1.23263 0.92343 0.91569 0.96513 1.70355 1.23385 1.07350 1.25244 1.26088 0.85331 0.97631 0.94474 1.48084 1.12971 1.07787 1.51220 0.71181 1.77984 1.05395 1.05043 1.24782 0.92224 0.89178 0.89167 0.76680 0.90479 0.91000 0.86295 0.86012 0.90879 0.90387 0.76013 0.86157 0.85705 0.75999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.62 7.85 -10.98 -0.09 9.53 16 12 O -0.52 -11.51 15.86 5.56 0.09 -11.42 16 13 N -0.74 -9.21 5.55 -61.47 -0.34 -9.55 16 14 C 0.15 1.54 6.11 -5.19 -0.03 1.51 16 15 C -0.14 -1.02 9.24 -36.03 -0.33 -1.35 16 16 C -0.17 -1.03 9.24 -36.03 -0.33 -1.37 16 17 C 0.15 1.04 6.11 -5.20 -0.03 1.01 16 18 N -0.73 -4.54 5.55 -61.47 -0.34 -4.88 16 19 C 0.52 4.61 7.82 -10.98 -0.09 4.52 16 20 O -0.53 -7.13 16.03 5.55 0.09 -7.04 16 21 C -0.05 -0.32 6.33 -29.03 -0.18 -0.50 16 22 C 0.25 2.34 6.63 -156.86 -1.04 1.30 16 23 N -0.54 -4.93 11.19 -11.98 -0.13 -5.07 16 24 C 0.26 1.42 13.13 -90.66 -1.19 0.23 16 25 N -0.48 -2.76 7.45 29.53 0.22 -2.54 16 26 H 0.44 0.83 8.96 -182.34 -1.63 -0.81 16 27 N -0.30 -2.93 12.80 32.42 0.41 -2.51 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 31 H 0.40 3.85 8.46 -40.82 -0.35 3.50 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 34 H 0.12 0.77 7.84 -52.49 -0.41 0.36 16 35 H 0.12 0.69 7.84 -52.49 -0.41 0.27 16 36 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.41 1.44 8.46 -40.82 -0.35 1.10 16 39 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.22 0.02 8.06 -52.49 -0.42 -0.40 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -41.99 382.88 -10.09 -52.08 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.46 Total: -1.19 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.90 Total: -0.76 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.55 Total: -49.84 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.99 -10.09 -52.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533385383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.697 kcal (2) G-P(sol) polarization free energy of solvation -41.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds