Wall clock time and date at job start Tue Mar 31 2020 22:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48495 * 109.46763 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99411 * 3 2 1 6 6 H 1.48495 * 109.47167 * 59.99537 * 3 2 1 7 7 C 1.38798 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99957 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46775 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00533 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99437 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99564 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46896 * 180.02562 * 14 13 11 16 16 C 1.31003 * 119.99850 * 125.00305 * 15 14 13 17 17 C 1.50694 * 120.00016 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.47550 * 124.99989 * 17 16 15 19 19 C 1.34777 * 120.00199 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 18 23 23 N 1.33241 * 125.52584 * 269.68822 * 22 21 19 24 24 C 1.30830 * 109.82844 * 179.85606 * 23 22 21 25 25 N 1.34430 * 108.07674 * 0.40877 * 24 23 22 26 26 H 0.96998 * 126.81705 * 179.78890 * 25 24 23 27 27 N 1.30706 * 125.52779 * 90.00107 * 22 21 19 28 28 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47100 * 60.00214 * 10 9 7 30 30 H 1.09005 * 109.47306 * 300.00002 * 10 9 7 31 31 H 0.96995 * 120.00539 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46998 * 60.00485 * 14 13 11 33 33 H 1.09005 * 109.47213 * 300.00393 * 14 13 11 34 34 H 1.07995 * 120.00040 * 305.00181 * 15 14 13 35 35 H 1.08002 * 119.99922 * 359.97438 * 16 15 14 36 36 H 1.08998 * 109.47333 * 4.99583 * 17 16 15 37 37 H 1.09002 * 109.47271 * 245.00017 * 17 16 15 38 38 H 0.97000 * 119.99484 * 359.97438 * 18 17 16 39 39 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 40 40 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 41 41 H 1.08001 * 125.95877 * 180.12478 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5024 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3305 -7.7151 0.0019 15 6 3.4849 -8.6837 0.0018 16 6 3.5690 -9.6027 0.9317 17 6 4.7237 -10.5710 0.9319 18 7 5.4018 -10.5221 2.2296 19 6 6.4717 -11.3085 2.4609 20 8 6.8727 -12.0569 1.5949 21 6 7.1655 -11.2626 3.7980 22 6 8.3172 -12.2345 3.7998 23 7 8.2521 -13.5115 4.1744 24 6 9.4284 -14.0707 4.0511 25 7 10.2862 -13.1416 3.5948 26 1 11.2304 -13.2634 3.4092 27 7 9.5433 -11.9599 3.4395 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8010 -6.1835 0.0004 32 1 1.7210 -7.8756 -0.8874 33 1 1.7227 -7.8748 0.8926 34 1 4.2429 -8.6203 -0.7648 35 1 2.8111 -9.6659 1.6986 36 1 5.4263 -10.2988 0.1443 37 1 4.3518 -11.5801 0.7541 38 1 5.0813 -9.9232 2.9220 39 1 7.5400 -10.2550 3.9786 40 1 6.4597 -11.5341 4.5830 41 1 9.6694 -15.0982 4.2805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533385383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:00 Heat of formation + Delta-G solvation = -5.896479 kcal Electronic energy + Delta-G solvation = -24035.168536 eV Core-core repulsion = 20077.215587 eV Total energy + Delta-G solvation = -3957.952949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.07294 -40.70623 -40.55093 -37.47918 -35.86143 -34.57360 -34.37088 -33.77763 -32.68792 -31.26264 -30.22483 -28.20362 -27.59006 -24.83385 -23.73635 -22.29621 -21.85074 -21.30675 -20.55184 -19.76462 -19.27739 -18.25528 -17.84321 -17.44438 -16.99243 -16.86768 -16.73356 -16.56813 -16.22131 -15.89265 -15.76284 -15.12554 -14.99844 -14.61832 -14.55041 -14.40164 -14.32188 -13.77116 -13.47148 -13.16029 -13.14536 -13.13226 -12.95168 -12.89967 -12.58986 -12.18342 -11.69833 -11.35255 -11.14782 -11.10615 -11.07933 -11.01282 -10.70125 -10.45995 -10.25441 -10.14125 -9.92815 -8.65097 -8.33743 -6.11465 0.63428 0.86363 1.31068 1.42348 1.50188 1.58730 1.61064 1.63004 1.75586 1.85948 2.28043 2.42937 2.48767 3.00723 3.17764 3.34532 3.59537 3.67704 3.88637 4.01213 4.04601 4.17809 4.30633 4.35439 4.46871 4.53692 4.54887 4.58430 4.60051 4.70624 4.86556 5.23028 5.31669 5.36304 5.38713 5.43599 5.59340 5.70869 6.21302 6.25510 6.51169 6.52936 7.08009 7.09171 7.20630 7.25950 8.75747 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.001387 C = 0.001310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.915854 B =20185.873115 C =21369.525035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.710 5.710 14 C 0.147 3.853 15 C -0.142 4.142 16 C -0.142 4.142 17 C 0.152 3.848 18 N -0.711 5.711 19 C 0.521 3.479 20 O -0.583 6.583 21 C -0.047 4.047 22 C 0.230 3.770 23 N -0.575 5.575 24 C 0.274 3.726 25 N -0.476 5.476 26 H 0.457 0.543 27 N -0.342 5.342 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.421 0.579 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.799 -28.824 9.285 37.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.024 3.976 15 C -0.162 4.162 16 C -0.161 4.161 17 C 0.029 3.971 18 N -0.364 5.364 19 C 0.307 3.693 20 O -0.463 6.463 21 C -0.089 4.089 22 C -0.054 4.054 23 N -0.304 5.304 24 C -0.025 4.025 25 N -0.196 5.196 26 H 0.306 0.694 27 N -0.173 5.173 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.258 0.742 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 19.856 -29.070 8.547 36.227 hybrid contribution 2.318 1.158 -0.067 2.592 sum 22.174 -27.912 8.480 36.642 Atomic orbital electron populations 1.70188 1.07973 1.28532 1.48114 1.26109 0.95934 1.03270 0.93748 0.84913 0.78630 0.76403 0.78046 1.18028 1.20020 1.19938 1.23248 0.95371 0.92026 1.58721 0.89882 1.85578 1.10640 0.99265 1.97050 1.23379 1.03517 0.94335 1.06884 1.20065 0.86212 0.86685 0.75128 1.90696 1.17447 1.86088 1.50231 1.45727 1.10388 1.04786 1.75481 1.20376 0.95345 0.79383 1.02459 1.22839 0.98246 0.95252 0.99829 1.22894 0.98099 0.95659 0.99443 1.20266 0.92294 0.99031 0.85518 1.45783 1.30322 1.43124 1.17200 1.20618 0.80175 0.79193 0.89269 1.90724 1.66221 1.41075 1.48247 1.20028 0.93094 0.99367 0.96411 1.23767 0.92933 0.92282 0.96395 1.70352 1.25424 1.07695 1.26954 1.27010 0.84246 0.98953 0.92252 1.48039 1.13735 1.06992 1.50824 0.69424 1.77868 1.06057 1.07240 1.26095 0.92008 0.87056 0.87228 0.74569 0.91457 0.91283 0.85099 0.84890 0.91530 0.90968 0.74187 0.83975 0.83400 0.71356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -30.88 9.50 67.95 0.65 -30.23 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 11 C 0.53 18.84 7.85 87.66 0.69 19.53 16 12 O -0.57 -25.54 15.86 -3.02 -0.05 -25.59 16 13 N -0.71 -16.26 5.55 -466.77 -2.59 -18.85 16 14 C 0.15 2.84 6.11 85.63 0.52 3.37 16 15 C -0.14 -1.72 9.24 25.64 0.24 -1.49 16 16 C -0.14 -1.42 9.24 25.64 0.24 -1.18 16 17 C 0.15 1.84 6.11 85.63 0.52 2.37 16 18 N -0.71 -7.57 5.55 -466.79 -2.59 -10.16 16 19 C 0.52 8.72 7.82 87.66 0.69 9.40 16 20 O -0.58 -15.73 16.03 -3.04 -0.05 -15.78 16 21 C -0.05 -0.55 6.33 29.10 0.18 -0.36 16 22 C 0.23 4.23 6.63 138.63 0.92 5.15 16 23 N -0.58 -10.11 11.19 -191.81 -2.15 -12.26 16 24 C 0.27 2.52 13.13 180.36 2.37 4.89 16 25 N -0.48 -4.96 7.45 -60.49 -0.45 -5.41 16 26 H 0.46 1.19 8.96 -213.10 -1.91 -0.72 16 27 N -0.34 -6.49 12.80 -51.34 -0.66 -7.14 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 6.72 8.46 -92.71 -0.78 5.94 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.42 7.79 -2.38 -0.02 1.40 16 34 H 0.13 1.34 7.84 -2.91 -0.02 1.32 16 35 H 0.13 1.10 7.84 -2.91 -0.02 1.08 16 36 H 0.07 0.94 7.79 -2.39 -0.02 0.92 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.42 1.87 8.46 -92.71 -0.78 1.08 16 39 H 0.14 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.27 -0.74 8.06 -2.91 -0.02 -0.77 16 Total: -1.00 -95.27 382.88 -1.84 -97.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.38 Total: 9.58 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 7.92 Total: 8.15 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -8.15 Total: -109.23 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.10 Total: -41.37 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -95.27 -1.84 -97.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533385383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.216 kcal (2) G-P(sol) polarization free energy of solvation -95.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds