Wall clock time and date at job start Tue Mar 31 2020 22:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48492 * 109.47229 * 240.00234 * 3 2 1 5 5 H 1.48499 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46724 * 120.00348 * 3 2 1 7 7 C 1.38804 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00151 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.81011 * 99.99882 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47042 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99682 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99683 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46624 * 179.97438 * 14 13 11 16 16 C 1.31003 * 119.99936 * 127.00764 * 15 14 13 17 17 C 1.50703 * 119.99737 * 7.55411 * 16 15 14 18 18 N 1.46501 * 109.46800 * 127.15817 * 17 16 15 19 19 C 1.34778 * 119.99827 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00057 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.99991 * 180.02562 * 19 18 17 22 22 C 1.50706 * 109.47378 * 179.97438 * 21 19 18 23 23 N 1.33243 * 125.52724 * 269.69764 * 22 21 19 24 24 C 1.30836 * 109.82396 * 179.85153 * 23 22 21 25 25 N 1.34427 * 108.07914 * 0.40208 * 24 23 22 26 26 H 0.96996 * 126.82123 * 179.78728 * 25 24 23 27 27 N 1.30708 * 125.52373 * 89.99560 * 22 21 19 28 28 H 0.97006 * 120.00277 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46824 * 60.00208 * 10 9 7 30 30 H 1.08996 * 109.46931 * 300.00419 * 10 9 7 31 31 H 0.97003 * 120.00101 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.46849 * 60.00044 * 14 13 11 33 33 H 1.08993 * 109.46916 * 299.99620 * 14 13 11 34 34 H 1.07997 * 120.00460 * 307.00061 * 15 14 13 35 35 H 1.08000 * 120.00114 * 187.56023 * 16 15 14 36 36 H 1.08997 * 109.47277 * 7.15687 * 17 16 15 37 37 H 1.09007 * 109.46867 * 247.15586 * 17 16 15 38 38 H 0.97001 * 120.00332 * 0.02562 * 18 17 16 39 39 H 1.09000 * 109.47327 * 300.00035 * 21 19 18 40 40 H 1.09006 * 109.47194 * 60.00235 * 21 19 18 41 41 H 1.07997 * 125.95670 * 180.12363 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7152 -0.0019 15 6 3.4847 -8.6838 -0.0018 16 6 3.5469 -9.6285 0.9036 17 6 2.3858 -9.8552 1.8371 18 7 1.9908 -11.2652 1.7917 19 6 0.9668 -11.7030 2.5508 20 8 0.3726 -10.9297 3.2719 21 6 0.5608 -13.1535 2.5045 22 6 -0.5996 -13.3805 3.4389 23 7 -0.5042 -13.7219 4.7233 24 6 -1.6999 -13.8351 5.2423 25 7 -2.5995 -13.5717 4.2789 26 1 -3.5654 -13.5809 4.3672 27 7 -1.8630 -13.2797 3.1192 28 1 -0.4851 0.8401 0.0004 29 1 3.1243 -3.7315 0.8895 30 1 3.1244 -3.7314 -0.8905 31 1 3.8008 -6.1835 -0.0004 32 1 1.7225 -7.8747 -0.8926 33 1 1.7207 -7.8756 0.8873 34 1 4.2606 -8.5993 -0.7482 35 1 4.4304 -10.2448 0.9811 36 1 1.5456 -9.2324 1.5299 37 1 2.6800 -9.5928 2.8534 38 1 2.4667 -11.8839 1.2158 39 1 0.2664 -13.4162 1.4885 40 1 1.4013 -13.7760 2.8118 41 1 -1.9248 -14.0991 6.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533385384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:04 Heat of formation + Delta-G solvation = 36.744834 kcal Electronic energy + Delta-G solvation = -24515.527910 eV Core-core repulsion = 20559.424028 eV Total energy + Delta-G solvation = -3956.103882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.48220 -39.95070 -39.18429 -36.88714 -34.68204 -33.73021 -32.86003 -32.40734 -32.04951 -29.90883 -29.32754 -26.75741 -25.52994 -25.01310 -23.22190 -21.70433 -20.49090 -20.42477 -19.34124 -18.69963 -17.83958 -17.33430 -17.05986 -16.28063 -16.00408 -15.83462 -15.56594 -15.42112 -15.04873 -14.78580 -14.58182 -14.05557 -13.88104 -13.85875 -13.62222 -13.24101 -13.04209 -12.73578 -12.51622 -12.47650 -12.31510 -11.80630 -11.18036 -11.02590 -11.02089 -10.75455 -10.61953 -10.44634 -10.32897 -10.06170 -9.83531 -9.79515 -9.41224 -9.29001 -9.04132 -8.78170 -8.21476 -6.47782 -6.19318 -3.90002 1.21935 1.48830 2.25862 2.34520 2.40981 3.05042 3.11504 3.14062 3.25106 3.29541 3.35548 3.66830 3.81429 4.19370 4.22469 4.30573 4.44473 4.54885 4.62380 4.88719 4.90020 5.04572 5.15567 5.16415 5.25974 5.47817 5.54381 5.56267 5.77695 5.79057 5.90994 5.97032 6.01107 6.12013 6.15676 6.30701 6.61617 6.63390 7.12618 7.61140 7.67487 7.71283 7.90356 8.37012 8.62384 9.25617 10.88034 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.001603 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.049965 B =17458.683174 C =18649.410210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.133 3.867 15 C -0.141 4.141 16 C -0.163 4.163 17 C 0.134 3.866 18 N -0.725 5.725 19 C 0.519 3.481 20 O -0.523 6.523 21 C -0.047 4.047 22 C 0.245 3.755 23 N -0.536 5.536 24 C 0.264 3.736 25 N -0.482 5.482 26 H 0.443 0.557 27 N -0.301 5.301 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -32.644 5.268 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.390 5.390 14 C 0.010 3.990 15 C -0.161 4.161 16 C -0.182 4.182 17 C 0.011 3.989 18 N -0.378 5.378 19 C 0.303 3.697 20 O -0.398 6.398 21 C -0.089 4.089 22 C -0.039 4.039 23 N -0.264 5.264 24 C -0.035 4.035 25 N -0.200 5.200 26 H 0.289 0.711 27 N -0.131 5.131 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.236 0.764 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.064 -32.158 5.260 32.730 hybrid contribution 2.038 0.987 0.061 2.265 sum 5.102 -31.172 5.321 32.032 Atomic orbital electron populations 1.70009 1.05957 1.27557 1.46750 1.24994 0.95025 0.99018 0.94542 0.86220 0.79228 0.81244 0.78780 1.19945 1.20819 1.19948 1.22833 0.94882 0.91682 1.59080 0.90960 1.85427 1.04897 0.96285 1.96721 1.23528 1.06590 0.95257 1.04962 1.20342 0.86524 0.86276 0.75168 1.90716 1.15370 1.85541 1.47356 1.45938 1.10028 1.04931 1.78104 1.20498 0.94686 0.80532 1.03302 1.23031 0.99212 0.96369 0.97470 1.22850 0.98481 1.00680 0.96176 1.20583 0.96380 0.82065 0.99843 1.45825 1.35019 1.10894 1.46065 1.20214 0.79923 0.89653 0.79898 1.90791 1.52897 1.56975 1.39160 1.19861 0.94770 0.95226 0.99092 1.23259 0.91912 0.97491 0.91212 1.70347 1.24264 1.23436 1.08355 1.26078 0.84448 0.95857 0.97138 1.48080 1.10837 1.53485 1.07560 0.71138 1.77993 1.04892 1.23944 1.06226 0.92130 0.89158 0.89178 0.76711 0.90653 0.90199 0.85804 0.85874 0.89570 0.90401 0.76367 0.86271 0.85865 0.76008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.46 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 11 C 0.53 10.10 7.85 -10.99 -0.09 10.02 16 12 O -0.52 -12.08 15.86 5.56 0.09 -12.00 16 13 N -0.74 -9.80 5.55 -61.47 -0.34 -10.14 16 14 C 0.13 1.54 5.76 -5.19 -0.03 1.51 16 15 C -0.14 -1.05 9.63 -36.03 -0.35 -1.39 16 16 C -0.16 -1.04 9.63 -36.03 -0.35 -1.38 16 17 C 0.13 1.18 5.76 -5.19 -0.03 1.15 16 18 N -0.73 -5.23 5.55 -61.47 -0.34 -5.57 16 19 C 0.52 5.30 7.82 -10.99 -0.09 5.21 16 20 O -0.52 -8.19 16.03 5.55 0.09 -8.10 16 21 C -0.05 -0.34 6.33 -29.03 -0.18 -0.52 16 22 C 0.24 2.59 6.63 -156.85 -1.04 1.55 16 23 N -0.54 -5.50 11.19 -11.97 -0.13 -5.63 16 24 C 0.26 1.74 13.13 -90.65 -1.19 0.55 16 25 N -0.48 -3.40 7.45 29.53 0.22 -3.18 16 26 H 0.44 1.45 8.96 -182.34 -1.63 -0.18 16 27 N -0.30 -3.31 12.80 32.42 0.41 -2.89 16 28 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.40 4.03 8.46 -40.82 -0.35 3.69 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.05 5.30 -51.93 -0.28 0.77 16 34 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.09 0.97 5.30 -51.93 -0.28 0.70 16 37 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.40 1.41 8.46 -40.82 -0.35 1.06 16 39 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.22 0.29 8.06 -52.49 -0.42 -0.14 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -43.36 378.39 -9.95 -53.31 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.22 Total: 0.89 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.92 Total: 0.66 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.55 Total: -53.17 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.18 Total: -20.09 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -43.36 -9.95 -53.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533385384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.055 kcal (2) G-P(sol) polarization free energy of solvation -43.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds