Wall clock time and date at job start Tue Mar 31 2020 22:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33320 * 126.81421 * 2 1 4 4 N 1.28508 * 109.44102 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63887 * 0.02562 * 4 3 2 6 6 H 0.97001 * 126.04313 * 179.73086 * 5 4 3 7 7 C 1.37010 * 126.81454 * 180.02562 * 2 1 3 8 8 C 1.47226 * 127.18551 * 0.02562 * 7 2 1 9 9 O 1.21625 * 120.00386 * 359.97438 * 8 7 2 10 10 N 1.34783 * 120.00004 * 179.97438 * 8 7 2 11 11 C 1.47064 * 136.05429 * 359.62323 * 10 8 7 12 12 C 1.53757 * 87.88679 * 152.96411 * 11 10 8 13 13 N 1.46500 * 114.08442 * 139.77955 * 12 11 10 14 14 C 1.46501 * 120.00063 * 326.56690 * 13 12 11 15 15 C 1.34781 * 119.99911 * 146.56572 * 13 12 11 16 16 O 1.21277 * 119.99586 * 0.02562 * 15 13 12 17 17 C 1.50691 * 120.00052 * 180.02562 * 15 13 12 18 18 S 1.81005 * 109.47340 * 179.97438 * 17 15 13 19 19 C 1.76196 * 99.99936 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00743 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99461 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00384 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47169 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47199 * 120.00036 * 23 21 19 26 26 H 1.48493 * 109.47218 * 240.00440 * 23 21 19 27 27 C 1.47063 * 136.05829 * 180.02562 * 10 8 7 28 28 H 1.08999 * 109.47529 * 89.97151 * 1 2 3 29 29 H 1.09002 * 109.47349 * 209.97886 * 1 2 3 30 30 H 1.09010 * 109.46760 * 329.97124 * 1 2 3 31 31 H 1.08991 * 113.47088 * 267.70100 * 11 10 8 32 32 H 1.09010 * 113.46620 * 38.14250 * 11 10 8 33 33 H 1.09001 * 114.39665 * 272.68070 * 12 11 10 34 34 H 1.08997 * 109.47219 * 90.00279 * 14 13 12 35 35 H 1.09000 * 109.46936 * 210.00034 * 14 13 12 36 36 H 1.08995 * 109.47135 * 329.99414 * 14 13 12 37 37 H 1.09007 * 109.46986 * 299.99827 * 17 15 13 38 38 H 1.09000 * 109.47784 * 59.99387 * 17 15 13 39 39 H 0.96995 * 120.00145 * 180.02562 * 22 21 19 40 40 H 1.09001 * 113.46912 * 321.86288 * 27 10 8 41 41 H 1.08999 * 113.46889 * 92.30690 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6057 -0.6014 -0.0015 6 1 4.4212 -1.1266 -0.0057 7 6 2.3280 -1.0969 -0.0005 8 6 1.9222 -2.5121 -0.0016 9 8 0.7421 -2.8064 -0.0018 10 7 2.8585 -3.4817 -0.0025 11 6 4.3281 -3.5344 -0.0094 12 6 4.2258 -4.8975 0.6946 13 7 5.1870 -5.8927 0.2131 14 6 5.5941 -5.8970 -1.1942 15 6 5.6968 -6.8044 1.0649 16 8 5.3594 -6.8011 2.2298 17 6 6.6860 -7.8277 0.5698 18 16 7.1812 -8.9008 1.9407 19 6 8.3046 -9.9688 1.1029 20 1 8.4945 -9.8329 0.0484 21 6 8.9463 -10.9843 1.7983 22 7 8.7152 -11.1497 3.0836 23 14 10.1378 -12.1162 0.9103 24 1 10.2222 -11.7227 -0.5192 25 1 11.4814 -12.0075 1.5332 26 1 9.6574 -13.5176 1.0108 27 6 2.8600 -4.9523 -0.0042 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 4.7557 -3.5937 -1.0102 32 1 4.7931 -2.7617 0.6031 33 1 4.1699 -4.8397 1.7817 34 1 6.4683 -5.2585 -1.3215 35 1 5.8399 -6.9144 -1.4982 36 1 4.7769 -5.5213 -1.8099 37 1 6.2253 -8.4287 -0.2144 38 1 7.5642 -7.3207 0.1702 39 1 9.1639 -11.8591 3.5696 40 1 2.0738 -5.3879 0.6125 41 1 2.9009 -5.3852 -1.0037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536277494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:55 Heat of formation + Delta-G solvation = 78.784980 kcal Electronic energy + Delta-G solvation = -26079.321610 eV Core-core repulsion = 22125.040725 eV Total energy + Delta-G solvation = -3954.280885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.87668 -41.29379 -39.43836 -38.19718 -35.11520 -34.43701 -32.91962 -32.51730 -30.68934 -29.02239 -27.94366 -27.25309 -26.74601 -25.59163 -24.64265 -22.91103 -21.85977 -20.51084 -19.55587 -18.64608 -17.86967 -17.37449 -17.28226 -16.92934 -16.80059 -16.17141 -15.70981 -15.05769 -14.88419 -14.45388 -14.27673 -14.13027 -13.72912 -13.49114 -13.44328 -13.30133 -13.28911 -13.11221 -12.65954 -12.57679 -12.48787 -12.33723 -12.17184 -11.67433 -11.53306 -11.14062 -11.11542 -11.05051 -10.84954 -10.69058 -9.90035 -9.84018 -9.65366 -9.38535 -9.15998 -8.89828 -8.34511 -6.61321 -6.30589 -4.02354 0.35347 1.76810 1.77656 2.00995 2.45704 2.71073 2.75666 3.15373 3.17650 3.24483 3.43093 3.52838 3.74684 3.82846 4.10970 4.19344 4.28830 4.35864 4.52326 4.58003 4.64798 4.79993 4.82952 5.01717 5.04869 5.11537 5.21515 5.23707 5.29069 5.36687 5.46999 5.48613 5.58853 5.72947 5.84077 5.97318 6.05403 6.24464 6.87193 7.18017 7.34618 7.51141 7.77482 8.25415 8.26611 9.15058 10.76819 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.033523 B = 0.001913 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.041699 B =14631.021033 C =14821.915434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.268 5.268 4 N -0.041 5.041 5 N -0.375 5.375 6 H 0.449 0.551 7 C -0.069 4.069 8 C 0.630 3.370 9 O -0.505 6.505 10 N -0.643 5.643 11 C 0.070 3.930 12 C 0.125 3.875 13 N -0.614 5.614 14 C 0.072 3.928 15 C 0.538 3.462 16 O -0.507 6.507 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.074 0.926 21 C 0.074 3.926 22 N -0.866 5.866 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.094 3.906 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.094 0.906 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 18.588 -11.142 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.135 5.135 4 N -0.023 5.023 5 N -0.104 5.104 6 H 0.298 0.702 7 C -0.202 4.202 8 C 0.417 3.583 9 O -0.378 6.378 10 N -0.380 5.380 11 C -0.054 4.054 12 C 0.019 3.981 13 N -0.350 5.350 14 C -0.071 4.071 15 C 0.326 3.674 16 O -0.380 6.380 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.501 5.501 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.030 4.030 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.420 19.849 -9.237 24.692 hybrid contribution 1.441 -1.970 -2.110 3.227 sum -9.978 17.878 -11.347 23.409 Atomic orbital electron populations 1.20356 0.84585 1.04664 1.03968 1.22389 0.98734 0.86778 0.99647 1.74990 0.95130 1.25840 1.17516 1.78220 1.16056 0.92228 1.15800 1.45773 1.08943 1.07052 1.48673 0.70227 1.21926 0.85146 0.95867 1.17305 1.16031 0.84343 0.81126 0.76761 1.90873 1.15591 1.81399 1.49923 1.49138 1.07205 1.08198 1.73427 1.23839 0.80552 0.98891 1.02149 1.22686 0.88012 0.86353 1.01054 1.47745 1.44791 1.32230 1.10250 1.21874 1.00184 1.04072 0.80937 1.20467 0.80786 0.80681 0.85460 1.90722 1.59137 1.71119 1.17015 1.23571 0.99740 1.00006 1.06789 1.85451 1.55811 1.33465 1.08679 1.22877 1.29530 1.18094 0.97932 0.90813 1.25002 0.96716 0.96896 0.94964 1.70016 1.41238 1.31491 1.07396 0.86109 0.80026 0.79897 0.79418 1.19600 1.20538 1.20523 1.23611 0.98711 0.78542 1.02089 0.89763 0.88691 0.89997 0.87961 0.90317 0.84164 0.92127 0.89790 0.91250 0.88954 0.88993 0.92142 0.88785 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.93 36.01 0.36 -0.23 16 2 C 0.06 0.64 7.30 -82.39 -0.60 0.04 16 3 N -0.27 -3.00 12.35 33.51 0.41 -2.59 16 4 N -0.04 -0.42 13.35 60.35 0.81 0.39 16 5 N -0.37 -2.86 6.89 33.31 0.23 -2.63 16 6 H 0.45 1.99 6.06 -190.33 -1.15 0.84 16 7 C -0.07 -0.63 7.12 -82.33 -0.59 -1.22 16 8 C 0.63 6.21 8.06 -12.61 -0.10 6.11 16 9 O -0.51 -6.33 15.77 5.26 0.08 -6.24 16 10 N -0.64 -5.03 3.69 -186.42 -0.69 -5.72 16 11 C 0.07 0.38 6.81 -8.37 -0.06 0.32 16 12 C 0.13 1.07 4.58 -67.66 -0.31 0.76 16 13 N -0.61 -6.32 3.11 -173.55 -0.54 -6.86 16 14 C 0.07 0.48 8.91 59.85 0.53 1.01 16 15 C 0.54 8.57 7.69 -10.99 -0.08 8.49 16 16 O -0.51 -10.15 15.38 5.56 0.09 -10.07 16 17 C -0.15 -2.68 4.71 36.00 0.17 -2.51 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.54 -14.48 9.50 30.94 0.29 -14.19 16 20 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 21 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 22 N -0.87 -25.24 13.22 55.49 0.73 -24.51 16 23 Si 0.92 20.57 29.55 -169.99 -5.02 15.54 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.09 0.74 8.17 -8.50 -0.07 0.67 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.79 6.61 -51.93 -0.34 0.44 16 30 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.34 6.54 -51.93 -0.34 0.00 16 32 H 0.08 0.30 6.47 -51.92 -0.34 -0.04 16 33 H 0.14 1.48 7.30 -51.93 -0.38 1.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.61 6.44 -51.93 -0.33 0.27 16 36 H 0.07 0.29 6.16 -51.93 -0.32 -0.03 16 37 H 0.09 1.50 7.40 -51.91 -0.38 1.11 16 38 H 0.09 1.49 8.11 -51.92 -0.42 1.07 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.61 6.97 -51.93 -0.36 0.25 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -36.05 360.23 -6.84 -42.89 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -5.61 Total: -3.06 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.55 Total: 1.17 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.95 Total: -41.91 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.17 Total: -16.31 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.05 -6.84 -42.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536277494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.676 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds