Wall clock time and date at job start Tue Mar 31 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33313 * 126.81272 * 2 1 4 4 N 1.28514 * 109.44186 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63317 * 359.71295 * 4 3 2 6 6 H 0.97005 * 126.03350 * 180.29859 * 5 4 3 7 7 C 1.37005 * 126.81321 * 180.02562 * 2 1 3 8 8 C 1.47231 * 127.19133 * 359.97438 * 7 2 1 9 9 O 1.21615 * 119.99954 * 7.04556 * 8 7 2 10 10 N 1.34779 * 120.00195 * 187.05454 * 8 7 2 11 11 C 1.46508 * 119.99755 * 6.18780 * 10 8 7 12 12 C 1.46496 * 120.00254 * 186.19435 * 10 8 7 13 13 C 1.53495 * 114.20935 * 119.99246 * 12 10 8 14 14 N 1.47071 * 87.98391 * 87.71728 * 13 12 10 15 15 C 1.34769 * 136.05924 * 207.08409 * 14 13 12 16 16 O 1.21289 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00147 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.47166 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99828 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00501 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00028 * 179.72744 * 19 18 17 22 22 N 1.31635 * 119.99634 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00235 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46925 * 89.99692 * 23 21 19 25 25 H 1.48501 * 109.47174 * 209.99812 * 23 21 19 26 26 H 1.48499 * 109.47372 * 329.99961 * 23 21 19 27 27 C 1.47069 * 87.88366 * 27.34358 * 14 13 12 28 28 H 1.09006 * 109.47359 * 269.96892 * 1 2 3 29 29 H 1.08999 * 109.47616 * 29.97802 * 1 2 3 30 30 H 1.09006 * 109.47076 * 149.97655 * 1 2 3 31 31 H 1.09004 * 109.46879 * 275.78943 * 11 10 8 32 32 H 1.08998 * 109.46808 * 35.78686 * 11 10 8 33 33 H 1.08993 * 109.46496 * 155.78953 * 11 10 8 34 34 H 1.09002 * 113.28262 * 346.92800 * 12 10 8 35 35 H 1.09003 * 113.46917 * 332.94204 * 13 12 10 36 36 H 1.08999 * 113.46792 * 202.50029 * 13 12 10 37 37 H 1.09007 * 109.46847 * 60.00350 * 17 15 14 38 38 H 1.08994 * 109.47033 * 300.00534 * 17 15 14 39 39 H 0.97000 * 119.99501 * 179.97438 * 22 21 19 40 40 H 1.08996 * 113.46799 * 87.43450 * 27 14 13 41 41 H 1.08996 * 113.47025 * 217.87733 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6056 -0.6014 0.0051 6 1 4.4212 -1.1265 0.0101 7 6 2.3279 -1.0969 -0.0005 8 6 1.9222 -2.5122 -0.0006 9 8 0.7498 -2.8086 -0.1294 10 7 2.8501 -3.4792 0.1422 11 6 4.2410 -3.1226 0.4329 12 6 2.4678 -4.8869 0.0067 13 6 3.2008 -5.6329 -1.1168 14 7 4.2656 -5.9375 -0.1491 15 6 5.5881 -6.1898 -0.2089 16 8 6.1570 -6.1934 -1.2801 17 6 6.3602 -6.4675 1.0552 18 16 8.0981 -6.7668 0.6473 19 6 8.7455 -7.0558 2.2602 20 1 8.0926 -7.0149 3.1196 21 6 10.0935 -7.3424 2.4260 22 7 10.8881 -7.3986 1.3780 23 14 10.7798 -7.6495 4.1359 24 1 10.6879 -9.0973 4.4535 25 1 12.2011 -7.2216 4.1831 26 1 9.9961 -6.8739 5.1306 27 6 3.2508 -5.8521 0.9119 28 1 -0.3634 -0.0006 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7589 -2.8912 -0.4979 32 1 4.2635 -2.2513 1.0874 33 1 4.7354 -3.9599 0.9254 34 1 1.3891 -5.0434 0.0174 35 1 3.5257 -4.9830 -1.9294 36 1 2.6693 -6.5165 -1.4699 37 1 5.9463 -7.3474 1.5478 38 1 6.2858 -5.6089 1.7224 39 1 11.8302 -7.5984 1.4938 40 1 2.7325 -6.7936 1.0935 41 1 3.6181 -5.3891 1.8277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536460557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:18 Heat of formation + Delta-G solvation = 95.072742 kcal Electronic energy + Delta-G solvation = -26788.863236 eV Core-core repulsion = 22835.288641 eV Total energy + Delta-G solvation = -3953.574595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.84507 -41.30998 -39.47420 -37.78423 -35.74957 -34.01946 -32.74312 -32.54073 -30.80965 -28.59255 -28.41436 -27.34858 -26.25028 -25.56836 -24.64227 -23.33163 -21.59476 -20.64920 -19.30810 -18.33776 -17.84857 -17.44062 -17.11022 -16.98316 -16.56709 -15.90807 -15.67385 -15.35734 -14.90472 -14.56905 -14.21768 -14.07313 -13.89194 -13.79469 -13.43371 -13.26481 -13.10162 -12.99686 -12.71146 -12.62311 -12.24912 -12.21685 -12.10087 -11.50040 -11.46722 -11.15563 -11.13054 -10.93814 -10.86296 -10.62695 -9.94421 -9.74388 -9.61979 -9.31659 -9.17559 -8.87129 -8.38911 -6.64815 -6.32867 -4.05277 0.43053 1.85642 1.91691 2.25763 2.49826 2.51618 2.84336 3.14544 3.15053 3.22202 3.39589 3.62113 3.85835 3.99079 4.08631 4.23083 4.24796 4.37170 4.64245 4.67782 4.72361 4.78658 5.02007 5.02799 5.08708 5.13114 5.26457 5.29723 5.32055 5.33840 5.40789 5.52834 5.66799 5.75123 5.82994 5.89824 5.94946 6.15437 6.57271 7.36396 7.48328 7.58974 7.88074 8.23626 8.30551 9.12601 10.74454 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002561 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.817599 B =10928.571175 C =11833.037511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.065 3.935 3 N -0.271 5.271 4 N -0.042 5.042 5 N -0.378 5.378 6 H 0.454 0.546 7 C -0.076 4.076 8 C 0.605 3.395 9 O -0.508 6.508 10 N -0.588 5.588 11 C 0.050 3.950 12 C 0.106 3.894 13 C 0.093 3.907 14 N -0.656 5.656 15 C 0.560 3.440 16 O -0.508 6.508 17 C -0.147 4.147 18 S -0.058 6.058 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.866 5.866 23 Si 0.919 3.081 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.272 1.272 27 C 0.092 3.908 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.270 0.730 40 H 0.104 0.896 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.320 9.052 -0.558 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 N -0.137 5.137 4 N -0.024 5.024 5 N -0.113 5.113 6 H 0.309 0.691 7 C -0.209 4.209 8 C 0.391 3.609 9 O -0.381 6.381 10 N -0.321 5.321 11 C -0.093 4.093 12 C 0.001 3.999 13 C -0.031 4.031 14 N -0.396 5.396 15 C 0.349 3.651 16 O -0.381 6.381 17 C -0.297 4.297 18 S 0.169 5.831 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.501 5.501 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.032 4.032 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.939 10.171 -2.310 22.502 hybrid contribution 0.207 -1.636 2.385 2.900 sum -19.732 8.535 0.075 21.499 Atomic orbital electron populations 1.20357 0.84708 1.04687 1.03868 1.22380 0.98664 0.86865 0.99654 1.74984 0.95204 1.25982 1.17565 1.78221 1.15953 0.92708 1.15494 1.46581 1.09339 1.07134 1.48228 0.69103 1.21904 0.85162 0.96160 1.17688 1.16709 0.85308 0.82146 0.76716 1.90825 1.16378 1.81678 1.49256 1.47239 1.08848 1.05535 1.70432 1.22292 0.82246 1.03230 1.01531 1.22427 1.00870 0.79275 0.97296 1.23381 0.86396 0.98887 0.94430 1.49891 1.05683 1.73179 1.10838 1.20004 0.78914 0.74956 0.91201 1.90745 1.67234 1.49200 1.30920 1.23509 1.04507 1.04463 0.97233 1.85456 0.93143 1.91985 1.12537 1.22831 0.96756 1.56280 0.92692 0.90912 1.25002 0.95843 0.94548 0.98128 1.70010 1.05515 1.45272 1.29329 0.86157 0.78250 0.78716 0.82323 1.20200 1.20668 1.19671 1.23437 0.87390 0.98962 0.93439 0.89892 0.90096 0.88571 0.91254 0.91178 0.87850 0.84603 0.90110 0.88373 0.89158 0.89532 0.92056 0.87809 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.00 36.00 0.36 -0.23 16 2 C 0.06 0.66 7.29 -82.40 -0.60 0.06 16 3 N -0.27 -3.24 12.35 33.51 0.41 -2.82 16 4 N -0.04 -0.48 13.35 60.35 0.81 0.33 16 5 N -0.38 -3.37 6.08 33.31 0.20 -3.17 16 6 H 0.45 2.98 5.09 -190.33 -0.97 2.01 16 7 C -0.08 -0.73 6.72 -82.33 -0.55 -1.28 16 8 C 0.60 5.66 7.65 -12.61 -0.10 5.56 16 9 O -0.51 -5.54 14.47 5.26 0.08 -5.46 16 10 N -0.59 -4.70 3.12 -174.90 -0.55 -5.25 16 11 C 0.05 0.38 8.03 59.85 0.48 0.86 16 12 C 0.11 0.76 4.70 -67.68 -0.32 0.44 16 13 C 0.09 0.82 8.24 -8.50 -0.07 0.75 16 14 N -0.66 -7.49 2.40 -185.06 -0.44 -7.94 16 15 C 0.56 9.40 7.49 -10.99 -0.08 9.32 16 16 O -0.51 -10.79 16.64 5.55 0.09 -10.69 16 17 C -0.15 -2.69 5.98 36.01 0.22 -2.47 16 18 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 19 C -0.54 -14.58 9.50 30.94 0.29 -14.28 16 20 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 23 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 C 0.09 0.68 7.45 -8.37 -0.06 0.61 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.76 6.50 -51.93 -0.34 0.42 16 31 H 0.07 0.52 7.54 -51.93 -0.39 0.12 16 32 H 0.07 0.42 5.64 -51.93 -0.29 0.13 16 33 H 0.10 0.90 5.05 -51.93 -0.26 0.64 16 34 H 0.14 0.83 7.26 -51.93 -0.38 0.45 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 38 H 0.09 1.42 8.14 -51.92 -0.42 0.99 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.59 7.39 -51.93 -0.38 0.21 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -35.85 359.21 -6.53 -42.38 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.52 Total: -1.46 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.53 Total: 1.29 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 1.17 Total: -43.38 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.17 Total: -16.16 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.85 -6.53 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536460557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.453 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds