Wall clock time and date at job start Tue Mar 31 2020 22:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33313 * 126.81272 * 2 1 4 4 N 1.28514 * 109.44186 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63317 * 359.71295 * 4 3 2 6 6 H 0.97005 * 126.03350 * 180.29859 * 5 4 3 7 7 C 1.37005 * 126.81321 * 180.02562 * 2 1 3 8 8 C 1.47231 * 127.19133 * 359.97438 * 7 2 1 9 9 O 1.21615 * 119.99954 * 7.04556 * 8 7 2 10 10 N 1.34779 * 120.00195 * 187.05454 * 8 7 2 11 11 C 1.46508 * 119.99755 * 6.18780 * 10 8 7 12 12 C 1.46496 * 120.00254 * 186.19435 * 10 8 7 13 13 C 1.53495 * 114.20935 * 119.99246 * 12 10 8 14 14 N 1.47071 * 87.98391 * 87.71728 * 13 12 10 15 15 C 1.34769 * 136.05924 * 207.08409 * 14 13 12 16 16 O 1.21289 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00147 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.47166 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99828 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00501 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00028 * 179.72744 * 19 18 17 22 22 N 1.31635 * 119.99634 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00235 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46925 * 89.99692 * 23 21 19 25 25 H 1.48501 * 109.47174 * 209.99812 * 23 21 19 26 26 H 1.48499 * 109.47372 * 329.99961 * 23 21 19 27 27 C 1.47069 * 87.88366 * 27.34358 * 14 13 12 28 28 H 1.09006 * 109.47359 * 269.96892 * 1 2 3 29 29 H 1.08999 * 109.47616 * 29.97802 * 1 2 3 30 30 H 1.09006 * 109.47076 * 149.97655 * 1 2 3 31 31 H 1.09004 * 109.46879 * 275.78943 * 11 10 8 32 32 H 1.08998 * 109.46808 * 35.78686 * 11 10 8 33 33 H 1.08993 * 109.46496 * 155.78953 * 11 10 8 34 34 H 1.09002 * 113.28262 * 346.92800 * 12 10 8 35 35 H 1.09003 * 113.46917 * 332.94204 * 13 12 10 36 36 H 1.08999 * 113.46792 * 202.50029 * 13 12 10 37 37 H 1.09007 * 109.46847 * 60.00350 * 17 15 14 38 38 H 1.08994 * 109.47033 * 300.00534 * 17 15 14 39 39 H 0.97000 * 119.99501 * 179.97438 * 22 21 19 40 40 H 1.08996 * 113.46799 * 87.43450 * 27 14 13 41 41 H 1.08996 * 113.47025 * 217.87733 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6056 -0.6014 0.0051 6 1 4.4212 -1.1265 0.0101 7 6 2.3279 -1.0969 -0.0005 8 6 1.9222 -2.5122 -0.0006 9 8 0.7498 -2.8086 -0.1294 10 7 2.8501 -3.4792 0.1422 11 6 4.2410 -3.1226 0.4329 12 6 2.4678 -4.8869 0.0067 13 6 3.2008 -5.6329 -1.1168 14 7 4.2656 -5.9375 -0.1491 15 6 5.5881 -6.1898 -0.2089 16 8 6.1570 -6.1934 -1.2801 17 6 6.3602 -6.4675 1.0552 18 16 8.0981 -6.7668 0.6473 19 6 8.7455 -7.0558 2.2602 20 1 8.0926 -7.0149 3.1196 21 6 10.0935 -7.3424 2.4260 22 7 10.8881 -7.3986 1.3780 23 14 10.7798 -7.6495 4.1359 24 1 10.6879 -9.0973 4.4535 25 1 12.2011 -7.2216 4.1831 26 1 9.9961 -6.8739 5.1306 27 6 3.2508 -5.8521 0.9119 28 1 -0.3634 -0.0006 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7589 -2.8912 -0.4979 32 1 4.2635 -2.2513 1.0874 33 1 4.7354 -3.9599 0.9254 34 1 1.3891 -5.0434 0.0174 35 1 3.5257 -4.9830 -1.9294 36 1 2.6693 -6.5165 -1.4699 37 1 5.9463 -7.3474 1.5478 38 1 6.2858 -5.6089 1.7224 39 1 11.8302 -7.5984 1.4938 40 1 2.7325 -6.7936 1.0935 41 1 3.6181 -5.3891 1.8277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536460557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:17 Heat of formation + Delta-G solvation = 68.802995 kcal Electronic energy + Delta-G solvation = -26790.002378 eV Core-core repulsion = 22835.288641 eV Total energy + Delta-G solvation = -3954.713736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.62414 -42.11665 -40.39632 -38.92819 -36.51507 -34.77918 -34.60056 -33.51745 -32.04394 -29.57372 -29.15397 -28.11802 -27.67427 -26.92494 -25.45050 -24.11109 -22.44269 -21.47209 -20.32842 -19.64884 -18.98416 -18.22223 -18.09637 -17.74719 -17.53448 -16.95863 -16.88097 -16.70445 -16.35825 -15.76118 -15.46571 -14.92714 -14.84836 -14.61288 -14.49822 -14.20523 -14.02905 -13.78037 -13.62857 -13.53395 -13.27059 -13.19630 -13.00181 -12.99379 -12.91202 -12.61021 -12.26621 -12.18633 -11.75429 -11.71696 -11.39290 -11.15981 -10.94579 -10.50328 -10.29777 -10.01363 -9.84125 -8.69416 -8.36629 -6.14791 -0.33062 1.05332 1.18563 1.21493 1.41158 1.41627 1.51377 1.54739 1.59559 1.75844 1.95722 2.25394 2.91731 2.98128 3.14932 3.19822 3.29909 3.51023 3.59564 3.66398 3.85957 3.91099 4.06987 4.12868 4.28561 4.36187 4.44017 4.49149 4.57531 4.59324 4.62456 4.68818 4.78354 4.82775 4.94130 5.17535 5.29905 5.40393 5.47404 5.86911 6.17941 6.53574 6.63994 7.05302 7.06999 7.08173 8.72287 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002561 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.817599 B =10928.571175 C =11833.037511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.056 3.944 3 N -0.295 5.295 4 N -0.062 5.062 5 N -0.364 5.364 6 H 0.462 0.538 7 C -0.077 4.077 8 C 0.610 3.390 9 O -0.521 6.521 10 N -0.585 5.585 11 C 0.047 3.953 12 C 0.118 3.882 13 C 0.090 3.910 14 N -0.651 5.651 15 C 0.563 3.437 16 O -0.565 6.565 17 C -0.120 4.120 18 S -0.149 6.149 19 C -0.543 4.543 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.996 3.004 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.257 1.257 27 C 0.094 3.906 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.136 0.864 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.620 8.731 1.462 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 N -0.161 5.161 4 N -0.043 5.043 5 N -0.101 5.101 6 H 0.319 0.681 7 C -0.211 4.211 8 C 0.396 3.604 9 O -0.396 6.396 10 N -0.317 5.317 11 C -0.096 4.096 12 C 0.013 3.987 13 C -0.033 4.033 14 N -0.389 5.389 15 C 0.352 3.648 16 O -0.444 6.444 17 C -0.271 4.271 18 S 0.078 5.922 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.180 1.180 27 C -0.028 4.028 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.176 0.824 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.295 9.860 -0.264 24.379 hybrid contribution 0.745 -1.510 1.712 2.401 sum -21.550 8.351 1.448 23.157 Atomic orbital electron populations 1.20430 0.83102 1.05061 1.04735 1.22845 0.99791 0.86614 0.99219 1.74959 0.95598 1.26979 1.18530 1.78177 1.16050 0.93612 1.16466 1.46585 1.09687 1.06635 1.47165 0.68091 1.22017 0.85175 0.96410 1.17493 1.16601 0.85199 0.82035 0.76532 1.90822 1.16893 1.81795 1.50062 1.47272 1.08725 1.05844 1.69811 1.22331 0.81921 1.03573 1.01758 1.22463 1.01717 0.78416 0.96069 1.23691 0.85335 1.00016 0.94253 1.49780 1.04656 1.70578 1.13850 1.19576 0.80593 0.75046 0.89584 1.90724 1.69018 1.52294 1.32318 1.23296 0.99169 1.05982 0.98665 1.85643 1.00067 1.92456 1.14049 1.23170 0.97300 1.55713 0.92946 0.89850 1.26100 0.96282 0.94137 1.02561 1.70178 1.05843 1.46718 1.32000 0.84987 0.77403 0.78888 0.76934 1.19448 1.20499 1.18042 1.23808 0.85691 1.00568 0.92752 0.88698 0.89141 0.88705 0.91438 0.89672 0.88592 0.82423 0.91593 0.85829 0.87665 0.87263 0.92022 0.84585 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.00 71.24 0.71 -0.32 16 2 C 0.06 1.09 7.29 42.04 0.31 1.40 16 3 N -0.29 -6.88 12.35 -47.89 -0.59 -7.48 16 4 N -0.06 -1.37 13.35 37.02 0.49 -0.88 16 5 N -0.36 -6.15 6.08 -48.52 -0.30 -6.44 16 6 H 0.46 5.63 5.09 -219.89 -1.12 4.51 16 7 C -0.08 -1.37 6.72 40.41 0.27 -1.10 16 8 C 0.61 10.06 7.65 86.61 0.66 10.72 16 9 O -0.52 -10.05 14.47 -4.08 -0.06 -10.11 16 10 N -0.58 -7.87 3.12 -825.50 -2.57 -10.44 16 11 C 0.05 0.63 8.03 127.77 1.03 1.65 16 12 C 0.12 1.26 4.70 45.55 0.21 1.48 16 13 C 0.09 1.36 8.24 83.18 0.69 2.04 16 14 N -0.65 -13.37 2.40 -857.80 -2.06 -15.42 16 15 C 0.56 18.51 7.49 87.66 0.66 19.17 16 16 O -0.57 -24.59 16.64 -3.06 -0.05 -24.64 16 17 C -0.12 -4.28 5.98 71.24 0.43 -3.85 16 18 S -0.15 -7.84 20.57 -56.49 -1.16 -9.00 16 19 C -0.54 -29.51 9.50 67.96 0.65 -28.87 16 20 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -54.39 13.22 21.65 0.29 -54.10 16 23 Si 1.00 41.98 29.55 68.60 2.03 44.01 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 27 C 0.09 1.00 7.45 83.27 0.62 1.62 16 28 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.34 6.50 -2.38 -0.02 1.33 16 31 H 0.07 0.94 7.54 -2.38 -0.02 0.92 16 32 H 0.09 0.86 5.64 -2.39 -0.01 0.85 16 33 H 0.10 1.46 5.05 -2.39 -0.01 1.45 16 34 H 0.16 1.22 7.26 -2.39 -0.02 1.20 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.11 3.37 8.14 -2.40 -0.02 3.35 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 0.92 7.39 -2.39 -0.02 0.90 16 Total: -1.00 -80.82 359.21 2.69 -78.13 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -0.02 Total: 11.19 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.69 Total: 5.18 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.74 Total: -94.76 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.11 Total: -34.74 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -80.82 2.69 -78.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536460557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.929 kcal (2) G-P(sol) polarization free energy of solvation -80.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds