Wall clock time and date at job start Tue Mar 31 2020 22:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48500 * 109.47106 * 239.99823 * 3 2 1 5 5 H 1.48504 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47212 * 119.99556 * 3 2 1 7 7 C 1.39942 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00454 * 197.84999 * 7 2 1 9 9 C 1.41401 * 119.99900 * 17.84727 * 7 2 1 10 10 C 1.40709 * 120.24371 * 204.38564 * 9 7 2 11 11 C 1.37617 * 119.74242 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25120 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74975 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47520 * 90.00056 * 13 12 11 15 15 C 1.34768 * 119.99962 * 180.02562 * 14 13 12 16 16 O 1.21767 * 120.00621 * 359.97438 * 15 14 13 17 17 C 1.46289 * 119.99960 * 179.97438 * 15 14 13 18 18 N 1.32547 * 125.56698 * 0.02586 * 17 15 14 19 19 C 1.32011 * 109.85026 * 179.97438 * 18 17 15 20 20 C 1.39327 * 107.93657 * 359.97438 * 19 18 17 21 21 C 1.40614 * 133.41736 * 180.02562 * 20 19 18 22 22 F 1.35101 * 120.42199 * 0.02562 * 21 20 19 23 23 C 1.36549 * 119.14797 * 180.02562 * 21 20 19 24 24 C 1.40286 * 119.56316 * 359.75173 * 23 21 20 25 25 C 1.35168 * 120.41881 * 0.50186 * 24 23 21 26 26 N 1.36217 * 120.65065 * 359.49758 * 25 24 23 27 27 C 1.38635 * 120.50178 * 0.25257 * 12 11 10 28 28 C 1.37619 * 120.24223 * 359.44875 * 27 12 11 29 29 H 0.96995 * 119.99800 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.13096 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87567 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47287 * 329.99375 * 13 12 11 33 33 H 1.09011 * 109.46682 * 209.99868 * 13 12 11 34 34 H 0.97006 * 119.99639 * 0.02562 * 14 13 12 35 35 H 1.08003 * 126.03143 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.21919 * 179.97438 * 23 21 20 37 37 H 1.07996 * 119.79551 * 180.27553 * 24 23 21 38 38 H 1.08005 * 119.67482 * 179.77046 * 25 24 23 39 39 H 1.07997 * 119.87727 * 179.70773 * 27 12 11 40 40 H 1.08006 * 120.12595 * 180.27592 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3522 -2.4072 -0.3742 10 6 1.8260 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2860 12 6 0.0669 -4.7512 -1.1105 13 6 -0.6315 -6.0252 -1.5108 14 7 -1.6746 -6.3390 -0.5312 15 6 -2.4338 -7.4417 -0.6852 16 8 -2.2532 -8.1771 -1.6388 17 6 -3.4751 -7.7554 0.2933 18 7 -3.7658 -7.0352 1.3674 19 6 -4.7562 -7.6010 2.0319 20 6 -5.1284 -8.7555 1.3464 21 6 -6.1040 -9.7423 1.5738 22 9 -6.9154 -9.6667 2.6514 23 6 -6.2208 -10.7779 0.6914 24 6 -5.3723 -10.8356 -0.4243 25 6 -4.4371 -9.8801 -0.6230 26 7 -4.3093 -8.8414 0.2489 27 6 -0.4053 -3.5329 -1.5741 28 6 0.2213 -2.3629 -1.2104 29 1 -0.4849 0.8400 -0.0004 30 1 2.6932 -3.6954 0.7276 31 1 1.5421 -5.7616 0.0654 32 1 0.0913 -6.8403 -1.5457 33 1 -1.0834 -5.8980 -2.4947 34 1 -1.8187 -5.7530 0.2283 35 1 -5.2003 -7.2334 2.9452 36 1 -6.9638 -11.5455 0.8494 37 1 -5.4644 -11.6505 -1.1269 38 1 -3.7877 -9.9383 -1.4841 39 1 -1.2704 -3.5018 -2.2197 40 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537510029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:28 Heat of formation + Delta-G solvation = 22.898215 kcal Electronic energy + Delta-G solvation = -26938.652489 eV Core-core repulsion = 22826.584259 eV Total energy + Delta-G solvation = -4112.068230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.44801 -43.18906 -39.31893 -37.82417 -37.63739 -34.85922 -33.58096 -33.26239 -31.41623 -30.41431 -29.37453 -28.81632 -26.93760 -24.64746 -24.13033 -23.17233 -22.58691 -21.08458 -20.62530 -20.13976 -18.72015 -17.90052 -17.38957 -17.06904 -16.83521 -16.68366 -15.94477 -15.70194 -15.45901 -15.32620 -14.71455 -14.65398 -14.28177 -14.14799 -13.83775 -13.63036 -13.34039 -12.76766 -12.53177 -12.47665 -12.37357 -12.04881 -12.00368 -11.69842 -11.15455 -11.05992 -10.88048 -10.76702 -10.72552 -10.47999 -10.21803 -9.76913 -9.71631 -9.48623 -9.22838 -8.82794 -7.86545 -7.57153 -7.45737 -6.86581 -4.46440 0.21127 0.42949 1.87319 2.10951 2.59282 2.80052 2.99179 3.01899 3.02933 3.08083 3.35917 3.52824 3.54997 3.85775 3.97883 4.10833 4.31813 4.42901 4.45296 4.59319 5.01125 5.18903 5.32865 5.42447 5.51351 5.59851 5.76043 5.84683 6.02328 6.12474 6.19139 6.25707 6.33465 6.56886 6.65392 6.87225 6.97725 7.18006 7.26429 7.28405 7.51322 7.67307 7.84264 7.95606 8.00843 8.19155 8.25790 8.53873 8.78797 8.86713 10.07227 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.002083 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.231478 B =13439.422176 C =14247.032908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.067 4.067 12 C -0.249 4.249 13 C 0.186 3.814 14 N -0.686 5.686 15 C 0.599 3.401 16 O -0.557 6.557 17 C 0.113 3.887 18 N -0.400 5.400 19 C 0.014 3.986 20 C -0.023 4.023 21 C 0.142 3.858 22 F -0.116 7.116 23 C -0.150 4.150 24 C -0.117 4.117 25 C 0.060 3.940 26 N -0.312 5.312 27 C -0.079 4.079 28 C -0.170 4.170 29 H 0.283 0.717 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.193 0.807 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.088 0.912 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 -16.934 0.992 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.249 4.249 11 C -0.086 4.086 12 C -0.251 4.251 13 C 0.065 3.935 14 N -0.335 5.335 15 C 0.383 3.617 16 O -0.437 6.437 17 C -0.137 4.137 18 N -0.116 5.116 19 C -0.148 4.148 20 C -0.135 4.135 21 C 0.120 3.880 22 F -0.094 7.094 23 C -0.172 4.172 24 C -0.138 4.138 25 C -0.062 4.062 26 N 0.019 4.981 27 C -0.098 4.098 28 C -0.189 4.189 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.251 0.749 35 H 0.210 0.790 36 H 0.170 0.830 37 H 0.180 0.820 38 H 0.203 0.797 39 H 0.107 0.893 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.560 -16.474 0.399 20.129 hybrid contribution -0.459 0.319 0.546 0.781 sum -12.018 -16.155 0.945 20.157 Atomic orbital electron populations 1.69813 1.07642 1.29617 1.33913 1.25960 0.94763 1.01502 0.92144 0.86337 0.80169 0.80008 0.80086 1.18725 1.20251 1.18900 1.19639 0.98212 0.91274 1.39476 0.90265 1.17673 0.90838 0.92054 0.87933 1.20966 1.04032 0.92781 1.07154 1.20401 0.95038 0.96560 0.96573 1.18916 1.02192 0.92538 1.11442 1.20086 0.87609 0.95548 0.90296 1.46316 1.34208 1.23865 1.29149 1.16194 0.79980 0.82455 0.83042 1.90803 1.70727 1.50418 1.31714 1.22806 1.01413 0.88592 1.00893 1.70076 1.12767 1.26093 1.02647 1.22806 0.97639 0.92313 1.02083 1.19632 0.98732 1.01508 0.93647 1.16343 0.90451 0.94627 0.86576 1.91558 1.69802 1.95950 1.52116 1.21175 1.02376 0.98740 0.94874 1.20745 0.94920 0.99458 0.98636 1.22202 1.01110 0.87058 0.95835 1.42261 1.22519 1.16880 1.16452 1.20555 0.97916 0.92542 0.98760 1.21307 0.99569 0.96755 1.01261 0.90589 0.88851 0.89332 0.91897 0.91847 0.74940 0.78980 0.82988 0.81989 0.79726 0.89348 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.67 10.95 55.55 0.61 -19.06 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.12 3.03 5.57 -106.83 -0.60 2.43 16 10 C -0.23 -5.42 9.80 -38.88 -0.38 -5.80 16 11 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 12 C -0.25 -5.13 5.27 -104.33 -0.55 -5.68 16 13 C 0.19 3.30 5.79 -5.19 -0.03 3.27 16 14 N -0.69 -11.66 5.54 -62.92 -0.35 -12.01 16 15 C 0.60 10.00 7.77 -13.03 -0.10 9.89 16 16 O -0.56 -9.89 15.33 5.13 0.08 -9.81 16 17 C 0.11 1.74 7.82 -153.89 -1.20 0.53 16 18 N -0.40 -6.05 10.79 -10.63 -0.11 -6.17 16 19 C 0.01 0.17 12.00 -17.07 -0.20 -0.03 16 20 C -0.02 -0.27 6.79 -84.16 -0.57 -0.84 16 21 C 0.14 1.35 7.34 -39.30 -0.29 1.06 16 22 F -0.12 -1.08 17.28 2.25 0.04 -1.04 16 23 C -0.15 -1.06 10.06 -39.42 -0.40 -1.46 16 24 C -0.12 -0.80 9.98 -39.90 -0.40 -1.20 16 25 C 0.06 0.60 10.52 -16.70 -0.18 0.43 16 26 N -0.31 -4.04 2.95 -58.84 -0.17 -4.21 16 27 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 28 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 29 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 30 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.06 1.11 8.08 -51.92 -0.42 0.69 16 34 H 0.41 7.15 8.11 -40.82 -0.33 6.82 16 35 H 0.19 1.80 8.06 -52.48 -0.42 1.37 16 36 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.19 1.83 6.76 -52.48 -0.36 1.47 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 3.07 6.16 -52.48 -0.32 2.74 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -28.70 356.43 -9.94 -38.64 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -3.93 Total: 11.49 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -6.43 Total: -16.23 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.03 Total: -41.45 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.70 -9.94 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537510029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.534 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds