Wall clock time and date at job start Tue Mar 31 2020 22:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48500 * 109.47106 * 239.99823 * 3 2 1 5 5 H 1.48504 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47212 * 119.99556 * 3 2 1 7 7 C 1.39942 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00454 * 197.84999 * 7 2 1 9 9 C 1.41401 * 119.99900 * 17.84727 * 7 2 1 10 10 C 1.40709 * 120.24371 * 204.38564 * 9 7 2 11 11 C 1.37617 * 119.74242 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25120 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74975 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47520 * 90.00056 * 13 12 11 15 15 C 1.34768 * 119.99962 * 180.02562 * 14 13 12 16 16 O 1.21767 * 120.00621 * 359.97438 * 15 14 13 17 17 C 1.46289 * 119.99960 * 179.97438 * 15 14 13 18 18 N 1.32547 * 125.56698 * 0.02586 * 17 15 14 19 19 C 1.32011 * 109.85026 * 179.97438 * 18 17 15 20 20 C 1.39327 * 107.93657 * 359.97438 * 19 18 17 21 21 C 1.40614 * 133.41736 * 180.02562 * 20 19 18 22 22 F 1.35101 * 120.42199 * 0.02562 * 21 20 19 23 23 C 1.36549 * 119.14797 * 180.02562 * 21 20 19 24 24 C 1.40286 * 119.56316 * 359.75173 * 23 21 20 25 25 C 1.35168 * 120.41881 * 0.50186 * 24 23 21 26 26 N 1.36217 * 120.65065 * 359.49758 * 25 24 23 27 27 C 1.38635 * 120.50178 * 0.25257 * 12 11 10 28 28 C 1.37619 * 120.24223 * 359.44875 * 27 12 11 29 29 H 0.96995 * 119.99800 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.13096 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87567 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47287 * 329.99375 * 13 12 11 33 33 H 1.09011 * 109.46682 * 209.99868 * 13 12 11 34 34 H 0.97006 * 119.99639 * 0.02562 * 14 13 12 35 35 H 1.08003 * 126.03143 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.21919 * 179.97438 * 23 21 20 37 37 H 1.07996 * 119.79551 * 180.27553 * 24 23 21 38 38 H 1.08005 * 119.67482 * 179.77046 * 25 24 23 39 39 H 1.07997 * 119.87727 * 179.70773 * 27 12 11 40 40 H 1.08006 * 120.12595 * 180.27592 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3522 -2.4072 -0.3742 10 6 1.8260 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2860 12 6 0.0669 -4.7512 -1.1105 13 6 -0.6315 -6.0252 -1.5108 14 7 -1.6746 -6.3390 -0.5312 15 6 -2.4338 -7.4417 -0.6852 16 8 -2.2532 -8.1771 -1.6388 17 6 -3.4751 -7.7554 0.2933 18 7 -3.7658 -7.0352 1.3674 19 6 -4.7562 -7.6010 2.0319 20 6 -5.1284 -8.7555 1.3464 21 6 -6.1040 -9.7423 1.5738 22 9 -6.9154 -9.6667 2.6514 23 6 -6.2208 -10.7779 0.6914 24 6 -5.3723 -10.8356 -0.4243 25 6 -4.4371 -9.8801 -0.6230 26 7 -4.3093 -8.8414 0.2489 27 6 -0.4053 -3.5329 -1.5741 28 6 0.2213 -2.3629 -1.2104 29 1 -0.4849 0.8400 -0.0004 30 1 2.6932 -3.6954 0.7276 31 1 1.5421 -5.7616 0.0654 32 1 0.0913 -6.8403 -1.5457 33 1 -1.0834 -5.8980 -2.4947 34 1 -1.8187 -5.7530 0.2283 35 1 -5.2003 -7.2334 2.9452 36 1 -6.9638 -11.5455 0.8494 37 1 -5.4644 -11.6505 -1.1269 38 1 -3.7877 -9.9383 -1.4841 39 1 -1.2704 -3.5018 -2.2197 40 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537510029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:27 Heat of formation + Delta-G solvation = 8.113285 kcal Electronic energy + Delta-G solvation = -26939.293611 eV Core-core repulsion = 22826.584259 eV Total energy + Delta-G solvation = -4112.709353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.14534 -44.09454 -40.63854 -39.40306 -38.62051 -36.40325 -35.16768 -34.17909 -32.50760 -31.85649 -31.18505 -29.87016 -28.44860 -25.99272 -24.97213 -24.46080 -23.51396 -22.91224 -21.87941 -21.72101 -19.76743 -19.24384 -18.65144 -18.07724 -17.72878 -17.60727 -17.17740 -16.92350 -16.60952 -16.42481 -15.99931 -15.90434 -15.59232 -15.27684 -15.23266 -14.93663 -14.76567 -14.21054 -13.83865 -13.65650 -13.47137 -13.42493 -13.16713 -13.14178 -12.82844 -12.72804 -12.51189 -12.12064 -11.70945 -11.65343 -11.61476 -11.42223 -11.29671 -11.02585 -10.62083 -10.18938 -9.40823 -9.30040 -8.72089 -8.67220 -6.37654 -0.51597 -0.45088 0.75553 1.05900 1.08375 1.13978 1.38343 1.48673 1.52063 2.04816 2.19244 2.22976 2.28424 2.74111 2.79920 3.16449 3.22272 3.50640 3.59650 3.73923 3.78421 4.06368 4.19594 4.29332 4.50330 4.54032 4.64097 4.65467 4.73058 4.77438 4.83857 5.03684 5.13666 5.19118 5.29219 5.34929 5.38146 5.42641 5.67714 5.71586 5.89040 6.07770 6.18273 6.23504 6.35147 6.54344 6.66919 6.90899 6.95699 6.99889 8.29068 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.002083 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.231478 B =13439.422176 C =14247.032908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.244 4.244 11 C -0.066 4.066 12 C -0.231 4.231 13 C 0.195 3.805 14 N -0.690 5.690 15 C 0.604 3.396 16 O -0.574 6.574 17 C 0.063 3.937 18 N -0.422 5.422 19 C -0.006 4.006 20 C -0.018 4.018 21 C 0.124 3.876 22 F -0.115 7.115 23 C -0.121 4.121 24 C -0.084 4.084 25 C 0.025 3.975 26 N -0.308 5.308 27 C -0.081 4.081 28 C -0.193 4.193 29 H 0.289 0.711 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.214 0.786 36 H 0.194 0.806 37 H 0.210 0.790 38 H 0.182 0.818 39 H 0.105 0.895 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 -19.788 0.904 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.524 4.524 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.264 4.264 11 C -0.085 4.085 12 C -0.233 4.233 13 C 0.073 3.927 14 N -0.340 5.340 15 C 0.390 3.610 16 O -0.455 6.455 17 C -0.185 4.185 18 N -0.139 5.139 19 C -0.170 4.170 20 C -0.132 4.132 21 C 0.102 3.898 22 F -0.094 7.094 23 C -0.143 4.143 24 C -0.103 4.103 25 C -0.096 4.096 26 N 0.024 4.976 27 C -0.100 4.100 28 C -0.212 4.212 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.231 0.769 36 H 0.211 0.789 37 H 0.226 0.774 38 H 0.199 0.801 39 H 0.123 0.877 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.345 -19.339 0.295 23.498 hybrid contribution -0.150 0.820 0.570 1.010 sum -13.495 -18.519 0.864 22.931 Atomic orbital electron populations 1.69869 1.09028 1.30799 1.34726 1.26792 0.95500 1.04624 0.91168 0.85246 0.78800 0.75551 0.80109 1.18461 1.19205 1.18302 1.19881 0.98479 0.92504 1.41583 0.90410 1.18016 0.91651 0.93139 0.88789 1.21163 1.04633 0.93002 1.07592 1.20695 0.94753 0.97034 0.96016 1.19169 1.01447 0.93179 1.09508 1.19928 0.87947 0.94200 0.90582 1.46092 1.34498 1.24406 1.28962 1.16248 0.79920 0.81748 0.83051 1.90770 1.71404 1.50821 1.32504 1.22239 1.03445 0.90878 1.01893 1.69959 1.13789 1.26991 1.03112 1.23256 0.97678 0.92992 1.03041 1.20011 0.98625 1.01637 0.92912 1.16523 0.90566 0.95065 0.87626 1.91567 1.69614 1.95979 1.52200 1.21765 1.01654 0.97851 0.92997 1.21380 0.91971 0.98601 0.98374 1.22596 1.03097 0.87725 0.96219 1.42334 1.21794 1.16683 1.16832 1.20767 0.98108 0.92396 0.98722 1.21268 1.00455 0.97045 1.02478 0.89985 0.88288 0.86567 0.90917 0.91432 0.75221 0.76903 0.78852 0.77354 0.80087 0.87723 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.60 10.95 21.83 0.24 -42.36 16 2 C 0.03 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 37.84 29.59 68.60 2.03 39.87 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.50 -26.51 9.05 23.46 0.21 -26.30 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.09 4.64 5.57 -21.29 -0.12 4.52 16 10 C -0.24 -11.82 9.80 22.73 0.22 -11.60 16 11 C -0.07 -2.82 9.67 22.22 0.21 -2.61 16 12 C -0.23 -9.52 5.27 -19.67 -0.10 -9.62 16 13 C 0.19 6.82 5.79 85.63 0.50 7.32 16 14 N -0.69 -23.70 5.54 -471.16 -2.61 -26.31 16 15 C 0.60 20.44 7.77 86.34 0.67 21.11 16 16 O -0.57 -20.41 15.33 -4.56 -0.07 -20.48 16 17 C 0.06 1.95 7.82 135.56 1.06 3.01 16 18 N -0.42 -13.14 10.79 -187.55 -2.02 -15.16 16 19 C -0.01 -0.16 12.00 84.93 1.02 0.86 16 20 C -0.02 -0.40 6.79 39.14 0.27 -0.13 16 21 C 0.12 1.98 7.34 22.46 0.16 2.14 16 22 F -0.12 -1.83 17.28 44.97 0.78 -1.06 16 23 C -0.12 -1.09 10.06 22.37 0.23 -0.86 16 24 C -0.08 -0.73 9.98 22.06 0.22 -0.51 16 25 C 0.03 0.46 10.52 83.30 0.88 1.33 16 26 N -0.31 -7.73 2.95 -340.06 -1.00 -8.74 16 27 C -0.08 -3.68 9.67 22.22 0.21 -3.47 16 28 C -0.19 -10.06 8.70 22.73 0.20 -9.86 16 29 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 30 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.07 2.42 8.08 -2.39 -0.02 2.40 16 33 H 0.07 2.32 8.08 -2.38 -0.02 2.30 16 34 H 0.41 14.59 8.11 -92.70 -0.75 13.84 16 35 H 0.21 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.21 -0.06 8.06 -2.91 -0.02 -0.08 16 38 H 0.18 3.35 6.76 -2.91 -0.02 3.33 16 39 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 Total: -1.00 -66.41 356.43 3.97 -62.44 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.36 Total: 34.27 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 6.28 Total: -22.48 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -5.40 Total: -92.57 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.07 Total: -20.48 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.06 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -66.41 3.97 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537510029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.552 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds