Wall clock time and date at job start Tue Mar 31 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00218 * 2 1 4 4 H 1.48506 * 109.47067 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47202 * 29.99415 * 3 2 1 6 6 H 1.48504 * 109.47539 * 149.99719 * 3 2 1 7 7 C 1.38800 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00171 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99848 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21297 * 119.99886 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00092 * 179.97438 * 11 10 9 14 14 C 1.40151 * 120.00099 * 180.02562 * 13 11 10 15 15 C 1.40416 * 125.97476 * 0.02562 * 14 13 11 16 16 C 1.35237 * 107.86796 * 179.97438 * 15 14 13 17 17 N 1.34970 * 107.85941 * 0.26441 * 16 15 14 18 18 C 1.46504 * 125.96940 * 179.73198 * 17 16 15 19 19 C 1.53002 * 109.46664 * 125.00133 * 18 17 16 20 20 N 1.46501 * 109.46874 * 179.97438 * 19 18 17 21 21 C 1.47049 * 125.41240 * 269.71637 * 20 19 18 22 22 C 1.54109 * 103.86368 * 179.87227 * 21 20 19 23 23 N 1.47057 * 103.85932 * 0.37576 * 22 21 20 24 24 C 1.33945 * 125.40816 * 90.02663 * 20 19 18 25 25 O 1.21591 * 123.04530 * 0.02562 * 24 20 19 26 26 N 1.31213 * 125.97528 * 180.02562 * 14 13 11 27 27 H 0.97004 * 120.00091 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47163 * 60.00075 * 10 9 7 29 29 H 1.08996 * 109.47370 * 300.00053 * 10 9 7 30 30 H 0.96994 * 119.99525 * 0.02562 * 13 11 10 31 31 H 1.08000 * 126.06023 * 359.97438 * 15 14 13 32 32 H 1.08002 * 126.06518 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46990 * 244.99353 * 18 17 16 34 34 H 1.08992 * 109.47218 * 5.00271 * 18 17 16 35 35 H 1.08996 * 109.47054 * 299.99799 * 19 18 17 36 36 H 1.09002 * 109.47229 * 60.00105 * 19 18 17 37 37 H 1.09000 * 110.55014 * 298.59844 * 21 20 19 38 38 H 1.09001 * 110.54614 * 61.40401 * 21 20 19 39 39 H 1.08999 * 110.75714 * 241.68131 * 22 21 20 40 40 H 1.08993 * 110.46133 * 118.93049 * 22 21 20 41 41 H 0.96996 * 125.40886 * 179.75608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4949 0.0011 14 6 7.4280 -4.7255 0.0016 15 6 8.4286 -3.7404 0.0022 16 6 9.6273 -4.3665 0.0031 17 7 9.3994 -5.6968 -0.0030 18 6 10.4228 -6.7451 -0.0099 19 6 10.1891 -7.6937 1.1675 20 7 11.2121 -8.7424 1.1603 21 6 11.1005 -10.0369 0.4716 22 6 12.4365 -10.7382 0.7850 23 7 13.1551 -9.7682 1.6248 24 6 12.3952 -8.6767 1.7848 25 8 12.7474 -7.7138 2.4383 26 7 8.0135 -5.8998 0.0014 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4314 -0.8893 29 1 3.6432 -3.4319 0.8906 30 1 5.4289 -5.2435 0.0011 31 1 8.2691 -2.6722 0.0021 32 1 10.5951 -3.8871 0.0033 33 1 10.3641 -7.3040 -0.9439 34 1 11.4093 -6.2905 0.0801 35 1 10.2477 -7.1349 2.1015 36 1 9.2025 -8.1485 1.0775 37 1 10.2628 -10.6104 0.8682 38 1 10.9904 -9.8903 -0.6029 39 1 12.9926 -10.9371 -0.1311 40 1 12.2615 -11.6636 1.3337 41 1 14.0389 -9.8980 2.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538408193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:49 Heat of formation + Delta-G solvation = 47.590804 kcal Electronic energy + Delta-G solvation = -25305.511060 eV Core-core repulsion = 21349.877494 eV Total energy + Delta-G solvation = -3955.633566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58981 -41.27787 -39.28669 -36.83514 -35.86661 -34.61774 -32.55166 -32.45392 -30.30281 -29.78382 -29.36029 -27.87345 -25.64550 -24.29708 -23.53096 -22.12666 -21.14292 -20.63830 -19.89910 -18.22008 -17.88401 -17.56481 -17.02385 -16.81421 -16.45373 -15.96970 -15.61602 -15.07026 -14.99127 -14.98904 -14.64520 -14.28646 -14.05817 -13.79180 -13.64439 -13.50817 -13.23046 -12.97538 -12.87777 -12.81177 -12.66931 -12.28504 -11.74655 -11.29099 -11.02220 -10.82343 -10.76856 -10.67343 -10.66151 -9.88397 -9.86112 -9.57357 -9.24567 -9.01992 -8.86963 -8.55007 -8.21099 -6.95257 -6.30392 -4.03112 1.67514 1.81244 2.22314 2.51947 2.63355 2.78512 3.23461 3.27840 3.32540 3.38600 3.49513 3.58810 3.77089 4.14367 4.23023 4.31476 4.38874 4.57784 4.60072 4.76456 4.77892 4.82065 4.87088 5.05518 5.08727 5.12201 5.28155 5.40337 5.51405 5.68037 5.69223 5.80872 5.93669 6.07915 6.26949 6.53887 6.82390 6.93168 6.98069 7.14799 7.84363 7.92468 8.06820 8.28247 8.40379 9.15397 10.78707 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.001680 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.992566 B =16663.290375 C =17045.964890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.090 0.910 9 S -0.135 6.135 10 C -0.122 4.122 11 C 0.539 3.461 12 O -0.492 6.492 13 N -0.640 5.640 14 C 0.311 3.689 15 C -0.263 4.263 16 C 0.065 3.935 17 N -0.373 5.373 18 C 0.128 3.872 19 C 0.142 3.858 20 N -0.632 5.632 21 C 0.090 3.910 22 C 0.092 3.908 23 N -0.742 5.742 24 C 0.697 3.303 25 O -0.582 6.582 26 N -0.331 5.331 27 H 0.271 0.729 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.415 0.585 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.355 -24.682 -0.992 35.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.108 0.892 9 S 0.091 5.909 10 C -0.272 4.272 11 C 0.326 3.674 12 O -0.362 6.362 13 N -0.290 5.290 14 C 0.055 3.945 15 C -0.293 4.293 16 C -0.080 4.080 17 N -0.158 5.158 18 C 0.004 3.996 19 C 0.019 3.981 20 N -0.371 5.371 21 C -0.034 4.034 22 C -0.033 4.033 23 N -0.404 5.404 24 C 0.397 3.603 25 O -0.459 6.459 26 N -0.161 5.161 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.192 0.808 32 H 0.193 0.807 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 26.385 -23.695 -0.664 35.469 hybrid contribution -0.620 -0.173 -0.018 0.644 sum 25.764 -23.868 -0.682 35.127 Atomic orbital electron populations 1.69934 1.05915 1.27810 1.47858 1.24702 0.94449 0.98962 0.93123 0.86745 0.81912 0.83298 0.79952 1.19182 1.19905 1.15871 1.22305 0.88110 0.97629 1.59035 0.89240 1.84810 1.09507 0.99128 1.97464 1.23263 0.92380 1.05136 1.06461 1.20473 0.91051 0.81074 0.74851 1.90637 1.58105 1.41906 1.45580 1.42840 1.02763 1.09652 1.73788 1.19220 0.85390 0.91997 0.97907 1.21961 0.89200 1.02145 1.16013 1.22621 1.00520 0.83495 1.01353 1.47908 1.03560 1.04817 1.59537 1.21979 0.88912 0.88604 1.00081 1.21440 0.90063 0.87527 0.99082 1.47047 1.17588 1.17876 1.54599 1.22458 0.98025 0.84091 0.98783 1.22359 0.91836 0.93191 0.95913 1.45109 1.20909 1.17897 1.56534 1.15947 0.81043 0.83300 0.79973 1.91004 1.75062 1.34351 1.45483 1.77234 0.87294 1.19461 1.32151 0.91899 0.87864 0.87803 0.74928 0.80783 0.80706 0.89871 0.88252 0.89005 0.88470 0.89605 0.89734 0.89782 0.89836 0.72803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.46 27.74 -169.99 -4.72 16.75 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.23 -5.85 6.74 56.52 0.38 -5.47 16 7 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.32 18.55 -107.50 -1.99 -5.32 16 10 C -0.12 -2.25 6.16 36.01 0.22 -2.03 16 11 C 0.54 9.41 7.82 -10.98 -0.09 9.32 16 12 O -0.49 -10.05 12.99 5.54 0.07 -9.97 16 13 N -0.64 -9.09 5.45 -11.13 -0.06 -9.16 16 14 C 0.31 4.63 8.11 -154.40 -1.25 3.38 16 15 C -0.26 -3.89 9.61 -39.83 -0.38 -4.27 16 16 C 0.07 0.75 11.44 -17.24 -0.20 0.55 16 17 N -0.37 -4.16 3.68 -61.38 -0.23 -4.39 16 18 C 0.13 0.99 6.83 -4.04 -0.03 0.96 16 19 C 0.14 1.10 6.18 -4.04 -0.02 1.07 16 20 N -0.63 -4.24 2.96 -178.81 -0.53 -4.77 16 21 C 0.09 0.25 7.68 -3.16 -0.02 0.22 16 22 C 0.09 0.15 8.06 -3.16 -0.03 0.13 16 23 N -0.74 -3.73 6.37 -64.70 -0.41 -4.15 16 24 C 0.70 6.31 8.60 -88.40 -0.76 5.55 16 25 O -0.58 -7.99 17.53 5.29 0.09 -7.90 16 26 N -0.33 -4.41 12.43 31.44 0.39 -4.02 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.41 4.60 8.82 -40.82 -0.36 4.24 16 31 H 0.17 2.88 5.91 -52.49 -0.31 2.57 16 32 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.09 0.92 7.91 -51.93 -0.41 0.50 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.43 1.55 8.96 -40.82 -0.37 1.19 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -38.12 367.86 -8.65 -46.78 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.25 Total: 2.93 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.34 Total: 3.12 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.06 Total: -51.92 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.16 Total: -17.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.72 Total: 16.75 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.12 -8.65 -46.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538408193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.370 kcal (2) G-P(sol) polarization free energy of solvation -38.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds