Wall clock time and date at job start Tue Mar 31 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00218 * 2 1 4 4 H 1.48506 * 109.47067 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47202 * 29.99415 * 3 2 1 6 6 H 1.48504 * 109.47539 * 149.99719 * 3 2 1 7 7 C 1.38800 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00171 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99848 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.21297 * 119.99886 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00092 * 179.97438 * 11 10 9 14 14 C 1.40151 * 120.00099 * 180.02562 * 13 11 10 15 15 C 1.40416 * 125.97476 * 0.02562 * 14 13 11 16 16 C 1.35237 * 107.86796 * 179.97438 * 15 14 13 17 17 N 1.34970 * 107.85941 * 0.26441 * 16 15 14 18 18 C 1.46504 * 125.96940 * 179.73198 * 17 16 15 19 19 C 1.53002 * 109.46664 * 125.00133 * 18 17 16 20 20 N 1.46501 * 109.46874 * 179.97438 * 19 18 17 21 21 C 1.47049 * 125.41240 * 269.71637 * 20 19 18 22 22 C 1.54109 * 103.86368 * 179.87227 * 21 20 19 23 23 N 1.47057 * 103.85932 * 0.37576 * 22 21 20 24 24 C 1.33945 * 125.40816 * 90.02663 * 20 19 18 25 25 O 1.21591 * 123.04530 * 0.02562 * 24 20 19 26 26 N 1.31213 * 125.97528 * 180.02562 * 14 13 11 27 27 H 0.97004 * 120.00091 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47163 * 60.00075 * 10 9 7 29 29 H 1.08996 * 109.47370 * 300.00053 * 10 9 7 30 30 H 0.96994 * 119.99525 * 0.02562 * 13 11 10 31 31 H 1.08000 * 126.06023 * 359.97438 * 15 14 13 32 32 H 1.08002 * 126.06518 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46990 * 244.99353 * 18 17 16 34 34 H 1.08992 * 109.47218 * 5.00271 * 18 17 16 35 35 H 1.08996 * 109.47054 * 299.99799 * 19 18 17 36 36 H 1.09002 * 109.47229 * 60.00105 * 19 18 17 37 37 H 1.09000 * 110.55014 * 298.59844 * 21 20 19 38 38 H 1.09001 * 110.54614 * 61.40401 * 21 20 19 39 39 H 1.08999 * 110.75714 * 241.68131 * 22 21 20 40 40 H 1.08993 * 110.46133 * 118.93049 * 22 21 20 41 41 H 0.96996 * 125.40886 * 179.75608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4949 0.0011 14 6 7.4280 -4.7255 0.0016 15 6 8.4286 -3.7404 0.0022 16 6 9.6273 -4.3665 0.0031 17 7 9.3994 -5.6968 -0.0030 18 6 10.4228 -6.7451 -0.0099 19 6 10.1891 -7.6937 1.1675 20 7 11.2121 -8.7424 1.1603 21 6 11.1005 -10.0369 0.4716 22 6 12.4365 -10.7382 0.7850 23 7 13.1551 -9.7682 1.6248 24 6 12.3952 -8.6767 1.7848 25 8 12.7474 -7.7138 2.4383 26 7 8.0135 -5.8998 0.0014 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4314 -0.8893 29 1 3.6432 -3.4319 0.8906 30 1 5.4289 -5.2435 0.0011 31 1 8.2691 -2.6722 0.0021 32 1 10.5951 -3.8871 0.0033 33 1 10.3641 -7.3040 -0.9439 34 1 11.4093 -6.2905 0.0801 35 1 10.2477 -7.1349 2.1015 36 1 9.2025 -8.1485 1.0775 37 1 10.2628 -10.6104 0.8682 38 1 10.9904 -9.8903 -0.6029 39 1 12.9926 -10.9371 -0.1311 40 1 12.2615 -11.6636 1.3337 41 1 14.0389 -9.8980 2.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538408193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:49 Heat of formation + Delta-G solvation = 18.415424 kcal Electronic energy + Delta-G solvation = -25306.776199 eV Core-core repulsion = 21349.877494 eV Total energy + Delta-G solvation = -3956.898705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45180 -41.95538 -40.60074 -37.50199 -36.63547 -35.64013 -34.65129 -33.36775 -31.37582 -30.90219 -29.94328 -28.67450 -27.83224 -25.03713 -23.83460 -23.28687 -22.08205 -21.34757 -21.02771 -19.83142 -18.76301 -18.44313 -17.87706 -17.71519 -17.36974 -17.09437 -16.81542 -16.79852 -15.99943 -15.82196 -15.60723 -15.18990 -15.14277 -14.83893 -14.76484 -14.55847 -14.23740 -14.11797 -13.94258 -13.73760 -13.32834 -13.09035 -13.00660 -12.96641 -12.68236 -12.46399 -11.92312 -11.86104 -11.76741 -11.43268 -11.15004 -10.99846 -10.53358 -10.44302 -9.90827 -9.66762 -9.23159 -8.97201 -8.49440 -6.20344 0.66709 0.82145 1.13100 1.30611 1.33778 1.46369 1.52927 1.71354 2.00283 2.07707 2.22762 2.27389 2.70032 2.89106 3.02546 3.50106 3.58598 3.60479 3.71066 3.96588 4.06304 4.21282 4.21781 4.22483 4.39479 4.45971 4.59386 4.64770 4.70391 4.75373 4.80737 4.98014 5.00438 5.12106 5.55115 5.70892 5.72924 6.01973 6.08625 6.14480 6.15840 6.45240 6.74638 6.95613 7.00172 7.49091 8.62745 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.001680 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.992566 B =16663.290375 C =17045.964890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.235 1.235 7 C -0.530 4.530 8 H 0.065 0.935 9 S -0.166 6.166 10 C -0.107 4.107 11 C 0.546 3.454 12 O -0.525 6.525 13 N -0.623 5.623 14 C 0.288 3.712 15 C -0.298 4.298 16 C 0.083 3.917 17 N -0.365 5.365 18 C 0.128 3.872 19 C 0.149 3.851 20 N -0.631 5.631 21 C 0.084 3.916 22 C 0.093 3.907 23 N -0.735 5.735 24 C 0.685 3.315 25 O -0.640 6.640 26 N -0.331 5.331 27 H 0.276 0.724 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.430 0.570 31 H 0.153 0.847 32 H 0.211 0.789 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.326 -26.971 -1.880 38.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.677 4.677 8 H 0.083 0.917 9 S 0.061 5.939 10 C -0.258 4.258 11 C 0.332 3.668 12 O -0.399 6.399 13 N -0.273 5.273 14 C 0.033 3.967 15 C -0.329 4.329 16 C -0.064 4.064 17 N -0.149 5.149 18 C 0.006 3.994 19 C 0.025 3.975 20 N -0.369 5.369 21 C -0.038 4.038 22 C -0.031 4.031 23 N -0.396 5.396 24 C 0.385 3.615 25 O -0.522 6.522 26 N -0.161 5.161 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.269 0.731 31 H 0.170 0.830 32 H 0.227 0.773 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 28.351 -26.108 -1.580 38.573 hybrid contribution -1.108 0.265 0.246 1.166 sum 27.242 -25.843 -1.334 37.574 Atomic orbital electron populations 1.70014 1.07310 1.28986 1.49113 1.25538 0.95240 1.02212 0.92909 0.85890 0.80753 0.79680 0.80205 1.18697 1.18526 1.15891 1.22471 0.90211 0.96800 1.58260 0.91669 1.84717 1.06477 1.05100 1.97618 1.23208 0.93714 1.00492 1.08393 1.20134 0.90167 0.81740 0.74753 1.90646 1.58574 1.43197 1.47473 1.42449 1.03275 1.08983 1.72640 1.19338 0.85329 0.92593 0.99439 1.21892 0.90734 1.01459 1.18789 1.23044 1.00983 0.83509 0.98846 1.48223 1.03334 1.05561 1.57752 1.22224 0.88129 0.88023 1.01058 1.21230 0.90651 0.87831 0.97749 1.47042 1.16523 1.18903 1.54429 1.22806 0.99177 0.82201 0.99637 1.22653 0.91050 0.92773 0.96626 1.45148 1.20880 1.17377 1.56188 1.16296 0.81884 0.83496 0.79828 1.90952 1.76426 1.36766 1.48071 1.77179 0.88453 1.18726 1.31790 0.91407 0.85898 0.85949 0.73146 0.82979 0.77258 0.87554 0.87446 0.91823 0.87874 0.88343 0.87768 0.87380 0.87849 0.72199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.97 21.65 0.30 -55.02 16 2 C 0.05 2.70 5.50 84.86 0.47 3.16 16 3 Si 0.91 44.46 27.74 68.60 1.90 46.36 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 7 C -0.53 -30.25 10.04 67.95 0.68 -29.57 16 8 H 0.07 3.91 8.03 -2.91 -0.02 3.89 16 9 S -0.17 -8.12 18.55 -56.49 -1.05 -9.16 16 10 C -0.11 -3.87 6.16 71.24 0.44 -3.43 16 11 C 0.55 18.74 7.82 87.66 0.69 19.43 16 12 O -0.53 -21.64 12.99 -3.08 -0.04 -21.68 16 13 N -0.62 -17.06 5.45 -307.50 -1.68 -18.73 16 14 C 0.29 8.33 8.11 133.33 1.08 9.41 16 15 C -0.30 -8.74 9.61 22.11 0.21 -8.52 16 16 C 0.08 1.78 11.44 83.52 0.96 2.73 16 17 N -0.36 -7.41 3.68 -348.10 -1.28 -8.69 16 18 C 0.13 1.66 6.83 86.38 0.59 2.25 16 19 C 0.15 2.09 6.18 86.38 0.53 2.63 16 20 N -0.63 -7.29 2.96 -838.36 -2.48 -9.77 16 21 C 0.08 0.18 7.68 86.65 0.67 0.85 16 22 C 0.09 -0.01 8.06 86.65 0.70 0.69 16 23 N -0.73 -6.00 6.37 -477.33 -3.04 -9.05 16 24 C 0.69 11.75 8.60 179.57 1.54 13.29 16 25 O -0.64 -17.89 17.53 -4.00 -0.07 -17.96 16 26 N -0.33 -8.28 12.43 -54.45 -0.68 -8.95 16 27 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 29 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 30 H 0.43 8.83 8.82 -92.71 -0.82 8.01 16 31 H 0.15 5.19 5.91 -2.91 -0.02 5.17 16 32 H 0.21 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 35 H 0.06 1.27 7.91 -2.39 -0.02 1.25 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.44 2.51 8.96 -92.71 -0.83 1.68 16 Total: -1.00 -85.38 367.86 -0.15 -85.53 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.59 Total: 14.20 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 8.55 Total: 12.93 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -8.85 Total: -110.21 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.11 Total: -39.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.05 Total: -9.16 kcal Total: -85.38 -0.15 -85.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538408193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.944 kcal (2) G-P(sol) polarization free energy of solvation -85.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds