Wall clock time and date at job start Tue Mar 31 2020 22:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30720 * 126.36538 * 2 1 4 4 N 1.28419 * 110.65514 * 180.25713 * 3 2 1 5 5 N 1.28957 * 110.21556 * 359.74453 * 4 3 2 6 6 N 1.35131 * 126.37223 * 179.82042 * 2 1 3 7 7 C 1.39975 * 127.38847 * 0.03065 * 6 2 1 8 8 C 1.39024 * 119.92064 * 144.70200 * 7 6 2 9 9 C 1.37745 * 120.08006 * 180.02562 * 8 7 6 10 10 C 1.39695 * 119.92180 * 359.97438 * 9 8 7 11 11 C 1.47679 * 120.08030 * 179.97438 * 10 9 8 12 12 O 1.21599 * 119.99837 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.40518 * 119.99811 * 179.72712 * 13 11 10 15 15 C 1.40671 * 126.08860 * 359.69068 * 14 13 11 16 16 N 1.30902 * 108.38844 * 179.85314 * 15 14 13 17 17 N 1.40068 * 108.41383 * 0.40868 * 16 15 14 18 18 C 1.37316 * 126.07145 * 179.70747 * 17 16 15 19 19 H 1.08001 * 120.00555 * 174.18430 * 18 17 16 20 20 C 1.38988 * 119.99591 * 354.17400 * 18 17 16 21 21 N 1.31290 * 120.00489 * 5.94626 * 20 18 17 22 22 Si 1.86803 * 119.99889 * 185.94492 * 20 18 17 23 23 H 1.48495 * 109.47392 * 94.98053 * 22 20 18 24 24 H 1.48501 * 109.46988 * 214.98485 * 22 20 18 25 25 H 1.48511 * 109.46980 * 334.97942 * 22 20 18 26 26 C 1.35702 * 126.08580 * 180.02562 * 14 13 11 27 27 C 1.39695 * 119.83914 * 0.25889 * 10 9 8 28 28 C 1.37753 * 119.91419 * 359.48183 * 27 10 9 29 29 H 1.09000 * 109.47743 * 270.17229 * 1 2 3 30 30 H 1.09003 * 109.47221 * 30.17236 * 1 2 3 31 31 H 1.09001 * 109.47375 * 150.17358 * 1 2 3 32 32 H 1.07999 * 119.95387 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.03552 * 179.97438 * 9 8 7 34 34 H 0.96997 * 119.99567 * 0.02562 * 13 11 10 35 35 H 1.07996 * 125.80124 * 359.97438 * 15 14 13 36 36 H 0.96994 * 120.00308 * 179.97438 * 21 20 18 37 37 H 1.08001 * 126.24202 * 359.95594 * 26 14 13 38 38 H 1.07996 * 120.04510 * 179.74281 * 27 10 9 39 39 H 1.08006 * 119.95520 * 180.27506 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0526 0.0000 4 7 3.5182 0.7049 -0.0054 5 7 3.6195 -0.5807 -0.0038 6 7 2.3083 -1.0880 0.0034 7 6 1.9169 -2.4319 0.0070 8 6 2.6674 -3.3747 -0.6863 9 6 2.2849 -4.6980 -0.6853 10 6 1.1416 -5.0924 0.0138 11 6 0.7280 -6.5101 0.0166 12 8 1.3832 -7.3357 -0.5897 13 7 -0.3751 -6.8888 0.6921 14 6 -0.7718 -8.2369 0.6901 15 6 -0.1202 -9.2914 0.0251 16 7 -0.7805 -10.3973 0.2583 17 7 -1.8806 -10.0930 1.0702 18 6 -2.8187 -10.9850 1.5284 19 1 -3.5761 -10.6611 2.2268 20 6 -2.7936 -12.3047 1.0931 21 7 -1.8071 -12.7280 0.3371 22 14 -4.1633 -13.4762 1.5836 23 1 -5.1903 -13.5138 0.5117 24 1 -3.6035 -14.8375 1.7808 25 1 -4.7851 -13.0088 2.8487 26 6 -1.8554 -8.7521 1.3241 27 6 0.3872 -4.1415 0.7052 28 6 0.7788 -2.8208 0.7043 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8885 -0.5165 31 1 -0.3634 -0.8915 -0.5111 32 1 3.5510 -3.0689 -1.2268 33 1 2.8683 -5.4297 -1.2245 34 1 -0.8974 -6.2302 1.1760 35 1 0.7740 -9.2037 -0.5741 36 1 -1.7894 -13.6491 0.0336 37 1 -2.5674 -8.2016 1.9211 38 1 -0.4996 -4.4421 1.2434 39 1 0.1984 -2.0858 1.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542388328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:14 Heat of formation + Delta-G solvation = 205.409280 kcal Electronic energy + Delta-G solvation = -26894.116732 eV Core-core repulsion = 22842.175488 eV Total energy + Delta-G solvation = -4051.941243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.61714 -40.54697 -39.64396 -38.38579 -35.54842 -34.49180 -33.79938 -33.30624 -31.59931 -30.91757 -30.26402 -29.30965 -27.84498 -25.67527 -24.81913 -23.75317 -22.82784 -21.96139 -21.22454 -20.65364 -19.56434 -18.87461 -17.94608 -17.31513 -17.16774 -15.88653 -15.61064 -15.55235 -15.30567 -14.93508 -14.87846 -14.42048 -14.40282 -14.10237 -13.90683 -13.76578 -13.45484 -13.28514 -13.11692 -13.05754 -12.75604 -12.54808 -11.94280 -11.76749 -11.56206 -11.46520 -11.36364 -11.32725 -11.03004 -10.60153 -10.58891 -10.32144 -9.64253 -9.49135 -9.28660 -9.19519 -8.91346 -8.16457 -6.82659 -6.65110 -4.32185 -0.18626 0.74808 0.85052 1.31728 1.82980 2.55651 2.91015 2.99239 3.05230 3.32186 3.34251 3.40567 3.68551 3.78451 3.83353 4.17816 4.21578 4.33571 4.39418 4.50986 4.68886 4.69264 4.80295 4.86526 4.92671 4.93888 4.99512 5.03414 5.21699 5.37127 5.52426 5.63475 5.87471 5.92804 6.13308 6.24959 6.35526 6.76410 6.84772 6.96344 7.12666 7.75956 7.99391 8.00261 8.15082 8.48380 8.67350 9.27203 9.55962 10.30937 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036993 B = 0.001864 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.721347 B =15020.593711 C =15656.913627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.253 3.747 3 N -0.332 5.332 4 N -0.036 5.036 5 N -0.076 5.076 6 N -0.329 5.329 7 C 0.133 3.867 8 C -0.100 4.100 9 C -0.044 4.044 10 C -0.097 4.097 11 C 0.534 3.466 12 O -0.526 6.526 13 N -0.610 5.610 14 C -0.065 4.065 15 C -0.028 4.028 16 N -0.261 5.261 17 N -0.140 5.140 18 C -0.323 4.323 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.767 5.767 22 Si 0.935 3.065 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.082 4.082 27 C -0.073 4.073 28 C -0.120 4.120 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.396 0.604 35 H 0.177 0.823 36 H 0.276 0.724 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 20.167 0.935 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 N -0.183 5.183 4 N -0.030 5.030 5 N -0.060 5.060 6 N -0.120 5.120 7 C 0.041 3.959 8 C -0.120 4.120 9 C -0.064 4.064 10 C -0.101 4.101 11 C 0.320 3.680 12 O -0.404 6.404 13 N -0.252 5.252 14 C -0.171 4.171 15 C -0.204 4.204 16 N -0.092 5.092 17 N 0.093 4.907 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.393 5.393 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.233 4.233 27 C -0.092 4.092 28 C -0.141 4.141 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.230 0.770 35 H 0.194 0.806 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.587 18.809 0.182 18.877 hybrid contribution -1.456 0.235 0.727 1.644 sum 0.131 19.045 0.909 19.067 Atomic orbital electron populations 1.20715 0.81946 1.06357 1.05496 1.25935 0.98342 0.82245 0.95790 1.74476 0.96325 1.24724 1.22728 1.78057 1.11388 1.04021 1.09547 1.82740 0.96864 1.04879 1.21541 1.48885 1.05917 1.06589 1.50624 1.17647 0.97536 0.79141 1.01573 1.21004 1.00173 0.92114 0.98693 1.21270 0.94583 0.94968 0.95577 1.20354 0.96547 0.94074 0.99131 1.17863 0.81685 0.87168 0.81295 1.90709 1.53664 1.52220 1.43838 1.42382 1.25653 1.07961 1.49217 1.17229 1.02329 0.83348 1.14182 1.24140 1.02496 0.89285 1.04447 1.78278 0.97496 1.19829 1.13595 1.44581 1.15391 1.03224 1.27476 1.19908 1.07732 0.90125 1.27756 0.86485 1.25664 0.97785 0.98046 0.95629 1.70211 1.26838 1.16886 1.25365 0.85801 0.79804 0.79112 0.79392 1.19585 1.20042 1.18734 1.21256 1.03141 0.86650 1.12285 1.21239 0.99293 0.91335 0.97349 1.20946 0.96228 0.97285 0.99617 0.87798 0.87323 0.88573 0.83928 0.82850 0.76967 0.80628 0.91336 0.83594 0.83849 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 8.74 36.00 0.31 0.03 16 2 C 0.25 2.14 7.97 -155.15 -1.24 0.90 16 3 N -0.33 -3.77 12.15 32.76 0.40 -3.37 16 4 N -0.04 -0.46 13.39 60.35 0.81 0.35 16 5 N -0.08 -0.93 13.74 60.35 0.83 -0.10 16 6 N -0.33 -3.22 3.77 -7.93 -0.03 -3.25 16 7 C 0.13 1.14 6.35 -83.56 -0.53 0.61 16 8 C -0.10 -0.90 9.79 -39.47 -0.39 -1.29 16 9 C -0.04 -0.45 9.58 -39.22 -0.38 -0.83 16 10 C -0.10 -1.06 5.87 -104.95 -0.62 -1.68 16 11 C 0.53 8.35 7.74 -12.40 -0.10 8.26 16 12 O -0.53 -10.36 13.49 5.28 0.07 -10.29 16 13 N -0.61 -9.61 5.41 -10.90 -0.06 -9.66 16 14 C -0.07 -1.40 6.90 -83.86 -0.58 -1.98 16 15 C -0.03 -0.70 10.85 -17.03 -0.18 -0.89 16 16 N -0.26 -7.32 10.42 30.80 0.32 -7.00 16 17 N -0.14 -3.67 3.74 -11.40 -0.04 -3.71 16 18 C -0.32 -8.19 10.24 -14.82 -0.15 -8.34 16 19 H 0.12 2.63 7.84 -52.49 -0.41 2.22 16 20 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 21 N -0.77 -20.79 11.84 55.49 0.66 -20.13 16 22 Si 0.94 18.22 29.56 -169.99 -5.02 13.19 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 26 C -0.08 -1.80 11.49 -16.38 -0.19 -1.99 16 27 C -0.07 -0.54 9.53 -39.22 -0.37 -0.92 16 28 C -0.12 -0.78 8.39 -39.47 -0.33 -1.11 16 29 H 0.10 0.14 7.84 -51.93 -0.41 -0.27 16 30 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.22 7.04 -51.93 -0.37 -0.15 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 34 H 0.40 4.43 6.85 -40.82 -0.28 4.16 16 35 H 0.18 4.36 5.91 -52.49 -0.31 4.05 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 38 H 0.14 0.72 6.39 -52.49 -0.34 0.38 16 39 H 0.14 0.51 6.28 -52.48 -0.33 0.18 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -35.19 346.11 -4.93 -40.12 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.24 Total: 6.79 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -4.83 Total: -8.16 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 2.88 Total: -46.88 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.19 -4.93 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542388328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.529 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds