Wall clock time and date at job start Tue Mar 31 2020 22:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30720 * 126.36538 * 2 1 4 4 N 1.28419 * 110.65514 * 180.25713 * 3 2 1 5 5 N 1.28957 * 110.21556 * 359.74453 * 4 3 2 6 6 N 1.35131 * 126.37223 * 179.82042 * 2 1 3 7 7 C 1.39975 * 127.38847 * 0.03065 * 6 2 1 8 8 C 1.39024 * 119.92064 * 144.70200 * 7 6 2 9 9 C 1.37745 * 120.08006 * 180.02562 * 8 7 6 10 10 C 1.39695 * 119.92180 * 359.97438 * 9 8 7 11 11 C 1.47679 * 120.08030 * 179.97438 * 10 9 8 12 12 O 1.21599 * 119.99837 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.40518 * 119.99811 * 179.72712 * 13 11 10 15 15 C 1.40671 * 126.08860 * 359.69068 * 14 13 11 16 16 N 1.30902 * 108.38844 * 179.85314 * 15 14 13 17 17 N 1.40068 * 108.41383 * 0.40868 * 16 15 14 18 18 C 1.37316 * 126.07145 * 179.70747 * 17 16 15 19 19 H 1.08001 * 120.00555 * 174.18430 * 18 17 16 20 20 C 1.38988 * 119.99591 * 354.17400 * 18 17 16 21 21 N 1.31290 * 120.00489 * 5.94626 * 20 18 17 22 22 Si 1.86803 * 119.99889 * 185.94492 * 20 18 17 23 23 H 1.48495 * 109.47392 * 94.98053 * 22 20 18 24 24 H 1.48501 * 109.46988 * 214.98485 * 22 20 18 25 25 H 1.48511 * 109.46980 * 334.97942 * 22 20 18 26 26 C 1.35702 * 126.08580 * 180.02562 * 14 13 11 27 27 C 1.39695 * 119.83914 * 0.25889 * 10 9 8 28 28 C 1.37753 * 119.91419 * 359.48183 * 27 10 9 29 29 H 1.09000 * 109.47743 * 270.17229 * 1 2 3 30 30 H 1.09003 * 109.47221 * 30.17236 * 1 2 3 31 31 H 1.09001 * 109.47375 * 150.17358 * 1 2 3 32 32 H 1.07999 * 119.95387 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.03552 * 179.97438 * 9 8 7 34 34 H 0.96997 * 119.99567 * 0.02562 * 13 11 10 35 35 H 1.07996 * 125.80124 * 359.97438 * 15 14 13 36 36 H 0.96994 * 120.00308 * 179.97438 * 21 20 18 37 37 H 1.08001 * 126.24202 * 359.95594 * 26 14 13 38 38 H 1.07996 * 120.04510 * 179.74281 * 27 10 9 39 39 H 1.08006 * 119.95520 * 180.27506 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0526 0.0000 4 7 3.5182 0.7049 -0.0054 5 7 3.6195 -0.5807 -0.0038 6 7 2.3083 -1.0880 0.0034 7 6 1.9169 -2.4319 0.0070 8 6 2.6674 -3.3747 -0.6863 9 6 2.2849 -4.6980 -0.6853 10 6 1.1416 -5.0924 0.0138 11 6 0.7280 -6.5101 0.0166 12 8 1.3832 -7.3357 -0.5897 13 7 -0.3751 -6.8888 0.6921 14 6 -0.7718 -8.2369 0.6901 15 6 -0.1202 -9.2914 0.0251 16 7 -0.7805 -10.3973 0.2583 17 7 -1.8806 -10.0930 1.0702 18 6 -2.8187 -10.9850 1.5284 19 1 -3.5761 -10.6611 2.2268 20 6 -2.7936 -12.3047 1.0931 21 7 -1.8071 -12.7280 0.3371 22 14 -4.1633 -13.4762 1.5836 23 1 -5.1903 -13.5138 0.5117 24 1 -3.6035 -14.8375 1.7808 25 1 -4.7851 -13.0088 2.8487 26 6 -1.8554 -8.7521 1.3241 27 6 0.3872 -4.1415 0.7052 28 6 0.7788 -2.8208 0.7043 29 1 -0.3634 0.0031 1.0276 30 1 -0.3634 0.8885 -0.5165 31 1 -0.3634 -0.8915 -0.5111 32 1 3.5510 -3.0689 -1.2268 33 1 2.8683 -5.4297 -1.2245 34 1 -0.8974 -6.2302 1.1760 35 1 0.7740 -9.2037 -0.5741 36 1 -1.7894 -13.6491 0.0336 37 1 -2.5674 -8.2016 1.9211 38 1 -0.4996 -4.4421 1.2434 39 1 0.1984 -2.0858 1.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542388328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:13 Heat of formation + Delta-G solvation = 180.715329 kcal Electronic energy + Delta-G solvation = -26895.187542 eV Core-core repulsion = 22842.175488 eV Total energy + Delta-G solvation = -4053.012054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.38029 -41.84871 -40.98085 -39.61929 -36.35065 -36.01868 -35.02976 -34.42795 -32.41547 -32.21506 -31.61664 -29.91794 -29.37640 -27.01678 -26.10782 -24.59013 -23.64095 -22.92677 -22.64706 -21.92379 -21.20319 -19.61291 -19.44233 -18.64562 -17.95572 -17.40108 -17.04738 -16.41028 -16.19996 -16.15386 -15.90363 -15.65970 -15.22014 -15.15716 -14.97499 -14.79468 -14.68567 -14.19855 -14.04272 -13.98011 -13.50811 -13.40656 -13.29528 -13.17140 -12.96570 -12.78757 -12.67996 -12.22446 -12.07620 -12.05741 -11.86240 -11.31282 -11.02892 -10.90104 -10.76601 -10.29022 -10.10036 -9.98406 -8.52014 -8.46093 -6.22869 -0.94523 0.06686 0.10429 0.63017 1.06465 1.26783 1.41739 1.56249 1.59545 1.86655 2.00672 2.24598 2.35859 2.73988 2.88736 2.91525 3.10335 3.20650 3.55929 3.60721 3.69392 3.79744 3.99919 4.14246 4.25374 4.33584 4.46545 4.57457 4.60203 4.65358 4.76066 4.79300 4.93882 5.00193 5.03208 5.05662 5.21700 5.26313 5.31441 5.43541 5.58868 5.97770 6.32107 6.69731 6.75185 7.21408 7.32378 7.48614 7.69633 8.53365 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036993 B = 0.001864 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.721347 B =15020.593711 C =15656.913627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.266 3.734 3 N -0.358 5.358 4 N -0.058 5.058 5 N -0.103 5.103 6 N -0.333 5.333 7 C 0.133 3.867 8 C -0.104 4.104 9 C -0.050 4.050 10 C -0.114 4.114 11 C 0.537 3.463 12 O -0.573 6.573 13 N -0.602 5.602 14 C -0.047 4.047 15 C -0.058 4.058 16 N -0.314 5.314 17 N -0.169 5.169 18 C -0.352 4.352 19 H 0.144 0.856 20 C -0.007 4.007 21 N -0.825 5.825 22 Si 1.017 2.983 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.241 1.241 26 C -0.073 4.073 27 C -0.051 4.051 28 C -0.100 4.100 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.422 0.578 35 H 0.167 0.833 36 H 0.276 0.724 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.453 22.883 3.005 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 N -0.209 5.209 4 N -0.053 5.053 5 N -0.088 5.088 6 N -0.124 5.124 7 C 0.041 3.959 8 C -0.125 4.125 9 C -0.069 4.069 10 C -0.118 4.118 11 C 0.325 3.675 12 O -0.454 6.454 13 N -0.247 5.247 14 C -0.153 4.153 15 C -0.234 4.234 16 N -0.145 5.145 17 N 0.062 4.938 18 C -0.483 4.483 19 H 0.161 0.839 20 C -0.219 4.219 21 N -0.453 5.453 22 Si 0.836 3.164 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.164 1.164 26 C -0.224 4.224 27 C -0.070 4.070 28 C -0.121 4.121 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.261 0.739 35 H 0.183 0.817 36 H 0.085 0.915 37 H 0.211 0.789 38 H 0.196 0.804 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.683 21.598 2.276 21.783 hybrid contribution -0.351 -0.323 0.048 0.480 sum -2.035 21.276 2.324 21.499 Atomic orbital electron populations 1.21145 0.77945 1.07903 1.07879 1.26904 0.99987 0.80907 0.93060 1.74421 0.96199 1.26258 1.24050 1.78035 1.12558 1.04433 1.10244 1.82684 0.98641 1.04835 1.22618 1.48940 1.05430 1.07200 1.50834 1.17903 0.98024 0.78544 1.01391 1.20939 1.00545 0.91732 0.99235 1.21148 0.94678 0.95253 0.95851 1.19972 0.98028 0.91765 1.01985 1.18616 0.80582 0.88801 0.79469 1.90696 1.54981 1.54216 1.45487 1.42235 1.26280 1.06169 1.49977 1.17269 1.01017 0.85216 1.11819 1.24196 1.02847 0.90541 1.05772 1.78168 0.99163 1.21775 1.15423 1.44855 1.15553 1.04921 1.28442 1.20625 1.08262 0.90777 1.28671 0.83918 1.26871 1.00120 0.99845 0.95034 1.70397 1.29694 1.17331 1.27906 0.84598 0.76051 0.75938 0.79765 1.19257 1.20462 1.16361 1.22061 1.03443 0.85556 1.11293 1.21530 0.99214 0.90721 0.95564 1.21309 0.95084 0.97518 0.98141 0.84622 0.86053 0.86762 0.84059 0.84278 0.73894 0.81652 0.91477 0.78903 0.80407 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.13 8.74 71.23 0.62 0.49 16 2 C 0.27 3.66 7.97 138.03 1.10 4.76 16 3 N -0.36 -7.56 12.15 -50.27 -0.61 -8.18 16 4 N -0.06 -1.48 13.39 37.02 0.50 -0.99 16 5 N -0.10 -2.47 13.74 37.02 0.51 -1.96 16 6 N -0.33 -5.70 3.77 -179.01 -0.67 -6.37 16 7 C 0.13 1.88 6.35 38.22 0.24 2.12 16 8 C -0.10 -1.77 9.79 22.34 0.22 -1.55 16 9 C -0.05 -0.99 9.58 22.51 0.22 -0.77 16 10 C -0.11 -2.25 5.87 -20.08 -0.12 -2.36 16 11 C 0.54 16.34 7.74 86.74 0.67 17.01 16 12 O -0.57 -23.38 13.49 -4.03 -0.05 -23.43 16 13 N -0.60 -17.55 5.41 -306.64 -1.66 -19.21 16 14 C -0.05 -1.98 6.90 37.75 0.26 -1.72 16 15 C -0.06 -3.03 10.85 85.43 0.93 -2.11 16 16 N -0.31 -18.34 10.42 -56.46 -0.59 -18.93 16 17 N -0.17 -8.94 3.74 -190.00 -0.71 -9.65 16 18 C -0.35 -17.85 10.24 84.01 0.86 -16.99 16 19 H 0.14 6.16 7.84 -2.91 -0.02 6.14 16 20 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 21 N -0.83 -46.76 11.84 21.66 0.26 -46.51 16 22 Si 1.02 37.29 29.56 68.60 2.03 39.32 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.24 -7.84 7.11 99.48 0.71 -7.13 16 26 C -0.07 -3.09 11.49 83.38 0.96 -2.13 16 27 C -0.05 -0.51 9.53 22.51 0.21 -0.30 16 28 C -0.10 -0.77 8.39 22.34 0.19 -0.58 16 29 H 0.14 -0.55 7.84 -2.39 -0.02 -0.57 16 30 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.11 -0.18 7.04 -2.39 -0.02 -0.19 16 32 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.14 3.10 7.64 -2.91 -0.02 3.08 16 34 H 0.42 7.55 6.85 -92.71 -0.63 6.92 16 35 H 0.17 8.79 5.91 -2.91 -0.02 8.77 16 36 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.19 6.04 8.06 -2.91 -0.02 6.02 16 38 H 0.18 0.57 6.39 -2.91 -0.02 0.55 16 39 H 0.18 -0.04 6.28 -2.91 -0.02 -0.06 16 Total: -1.00 -85.17 346.11 6.33 -78.84 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.52 Total: 21.06 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 6.83 Total: -4.00 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -2.98 Total: -111.79 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -85.17 6.33 -78.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542388328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.557 kcal (2) G-P(sol) polarization free energy of solvation -85.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds