Wall clock time and date at job start Tue Mar 31 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86794 * 120.00096 * 2 1 4 4 H 1.48497 * 109.47257 * 274.97851 * 3 2 1 5 5 H 1.48504 * 109.47541 * 34.97991 * 3 2 1 6 6 H 1.48502 * 109.47185 * 154.98254 * 3 2 1 7 7 C 1.38982 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00180 * 185.94970 * 7 2 1 9 9 N 1.37329 * 120.00024 * 5.95340 * 7 2 1 10 10 C 1.36495 * 126.06831 * 174.11753 * 9 7 2 11 11 C 1.35677 * 107.50896 * 180.02562 * 10 9 7 12 12 N 1.40596 * 126.08647 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00102 * 179.97438 * 12 11 10 14 14 O 1.21302 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99681 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.46817 * 180.02562 * 15 13 12 17 17 N 1.40593 * 127.39750 * 271.02692 * 16 15 13 18 18 N 1.28897 * 106.85976 * 179.82864 * 17 16 15 19 19 N 1.28414 * 110.39239 * 0.45211 * 18 17 16 20 20 C 1.31627 * 110.50090 * 359.70717 * 19 18 17 21 21 C 1.48022 * 126.48155 * 180.02562 * 20 19 18 22 22 C 1.39473 * 120.12995 * 340.98100 * 21 20 19 23 23 C 1.37989 * 119.85652 * 179.72746 * 22 21 20 24 24 C 1.38334 * 120.13653 * 0.57445 * 23 22 21 25 25 C 1.38339 * 120.27273 * 359.70012 * 24 23 22 26 26 C 1.37978 * 120.13626 * 0.02562 * 25 24 23 27 27 C 1.40656 * 107.83524 * 359.97438 * 11 10 9 28 28 N 1.30910 * 108.38375 * 0.02562 * 27 11 10 29 29 H 0.97004 * 119.99705 * 0.02562 * 1 2 3 30 30 H 1.07999 * 126.24570 * 359.76190 * 10 9 7 31 31 H 0.96998 * 119.99614 * 359.97438 * 12 11 10 32 32 H 1.09004 * 109.46637 * 299.99688 * 15 13 12 33 33 H 1.08997 * 109.47480 * 60.00013 * 15 13 12 34 34 H 1.07998 * 120.07604 * 0.02575 * 22 21 20 35 35 H 1.08007 * 119.93193 * 180.30177 * 23 22 21 36 36 H 1.08005 * 119.86582 * 179.72473 * 24 23 22 37 37 H 1.08002 * 119.93010 * 180.02562 * 25 24 23 38 38 H 1.08000 * 120.06711 * 180.02562 * 26 25 24 39 39 H 1.07995 * 125.80737 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3893 2.1071 -1.3947 5 1 1.5011 2.6200 0.8026 6 1 3.5932 1.4120 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0835 -1.2062 0.0975 9 7 1.3267 -2.3898 -0.1223 10 6 1.8862 -3.6283 -0.2495 11 6 0.8733 -4.5260 -0.3434 12 7 1.0109 -5.9178 -0.4875 13 6 -0.0846 -6.6985 -0.5689 14 8 -1.1895 -6.2005 -0.5174 15 6 0.0631 -8.1904 -0.7227 16 7 -1.2637 -8.8082 -0.7881 17 7 -2.0468 -9.2649 0.2865 18 7 -3.1375 -9.7315 -0.2176 19 7 -3.1203 -9.6255 -1.4972 20 6 -1.9975 -9.0678 -1.8985 21 6 -1.6096 -8.7782 -3.2972 22 6 -2.2483 -9.4321 -4.3507 23 6 -1.8860 -9.1536 -5.6527 24 6 -0.8835 -8.2368 -5.9137 25 6 -0.2424 -7.5892 -4.8729 26 6 -0.5995 -7.8549 -3.5669 27 6 -0.3392 -3.8167 -0.2711 28 7 -0.0653 -2.5434 -0.1395 29 1 -0.4850 0.8401 -0.0004 30 1 2.9424 -3.8523 -0.2753 31 1 1.8945 -6.3161 -0.5283 32 1 0.6107 -8.4086 -1.6396 33 1 0.6093 -8.5914 0.1310 34 1 -3.0280 -10.1513 -4.1480 35 1 -2.3832 -9.6556 -6.4696 36 1 -0.6004 -8.0254 -6.9344 37 1 0.5393 -6.8742 -5.0830 38 1 -0.0985 -7.3484 -2.7552 39 1 -1.3278 -4.2490 -0.3164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544158859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:05 Heat of formation + Delta-G solvation = 210.166177 kcal Electronic energy + Delta-G solvation = -27958.186763 eV Core-core repulsion = 23906.451794 eV Total energy + Delta-G solvation = -4051.734969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.04050 -40.21997 -39.43990 -38.87196 -35.29085 -34.47789 -33.34251 -33.20734 -31.33622 -30.53346 -30.37365 -29.46947 -27.57407 -25.05057 -24.22988 -23.73623 -22.55392 -21.62146 -21.24196 -20.60299 -19.64450 -17.94198 -17.82362 -17.28198 -17.08401 -16.43164 -15.93843 -15.54978 -15.43348 -15.23372 -15.06125 -14.33894 -14.17897 -13.87040 -13.70508 -13.59685 -13.31754 -13.18769 -13.04194 -12.73476 -12.25197 -11.79444 -11.76471 -11.61057 -11.37867 -11.35911 -11.18265 -11.02620 -10.95646 -10.67984 -10.59792 -10.41336 -9.51293 -9.33340 -9.30698 -9.00778 -8.93936 -8.19553 -6.89859 -6.66492 -4.35156 0.23938 1.01657 1.31681 1.57085 2.34475 2.39400 2.91434 2.98176 3.04669 3.18303 3.39632 3.51372 3.64891 3.76341 3.97610 4.26293 4.36372 4.43261 4.52935 4.60106 4.76030 4.78365 4.88072 4.91098 5.03077 5.20232 5.23814 5.30722 5.46940 5.66116 5.85680 6.03626 6.08391 6.11736 6.12375 6.27005 6.51222 6.66154 6.81306 6.87322 7.09595 7.72746 7.87118 8.10224 8.35175 8.41131 8.60741 9.24584 9.53046 10.29447 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002729 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.283257 B =10257.442522 C =11251.476826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.324 4.324 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.080 4.080 11 C -0.067 4.067 12 N -0.611 5.611 13 C 0.476 3.524 14 O -0.512 6.512 15 C 0.096 3.904 16 N -0.356 5.356 17 N -0.067 5.067 18 N -0.039 5.039 19 N -0.325 5.325 20 C 0.302 3.698 21 C -0.038 4.038 22 C -0.064 4.064 23 C -0.121 4.121 24 C -0.095 4.095 25 C -0.113 4.113 26 C -0.096 4.096 27 C -0.028 4.028 28 N -0.260 5.260 29 H 0.276 0.724 30 H 0.148 0.852 31 H 0.400 0.600 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -16.451 -10.464 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.231 4.231 11 C -0.173 4.173 12 N -0.254 5.254 13 C 0.259 3.741 14 O -0.387 6.387 15 C -0.031 4.031 16 N -0.151 5.151 17 N -0.052 5.052 18 N -0.034 5.034 19 N -0.177 5.177 20 C 0.027 3.973 21 C -0.041 4.041 22 C -0.085 4.085 23 C -0.139 4.139 24 C -0.113 4.113 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.203 4.203 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.234 0.766 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.097 -15.259 -9.211 18.090 hybrid contribution 2.056 0.213 -0.378 2.101 sum 5.153 -15.046 -9.589 18.571 Atomic orbital electron populations 1.70221 1.06213 1.28215 1.34569 1.25669 0.95704 1.00393 0.95345 0.85793 0.79456 0.79892 0.78929 1.19560 1.20025 1.18716 1.19917 0.92206 0.80617 1.52869 0.86443 1.44595 1.04030 1.03784 1.38136 1.21240 0.96798 0.85724 1.19350 1.17177 0.94433 0.80960 1.24719 1.42294 1.07652 1.05556 1.69873 1.20075 0.85687 0.87448 0.80900 1.90733 1.25233 1.73754 1.48996 1.22029 0.80382 0.92782 1.07927 1.51071 1.16293 1.42892 1.04867 1.82555 0.99413 1.14952 1.08310 1.77939 1.12238 1.11745 1.01485 1.74707 1.17135 1.21280 1.04580 1.23466 0.88590 0.95049 0.90157 1.17485 0.99563 1.00799 0.86278 1.21245 0.97890 0.97981 0.91337 1.21173 0.97797 0.98593 0.96328 1.21432 0.95140 0.95143 0.99623 1.21137 1.00529 0.99715 0.91760 1.21467 0.95968 0.95965 0.98235 1.24088 0.97869 0.91011 1.07381 1.78300 0.90259 1.14977 1.25560 0.91304 0.83503 0.76633 0.84801 0.84467 0.84249 0.84871 0.85179 0.84745 0.85517 0.80957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.93 11.84 55.49 0.66 -20.27 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.30 29.56 -169.99 -5.02 13.27 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.32 -8.22 10.24 -14.81 -0.15 -8.37 16 8 H 0.12 2.64 7.84 -52.49 -0.41 2.23 16 9 N -0.14 -3.63 3.74 -11.41 -0.04 -3.68 16 10 C -0.08 -1.74 11.49 -16.39 -0.19 -1.92 16 11 C -0.07 -1.42 6.90 -83.84 -0.58 -2.00 16 12 N -0.61 -9.09 5.47 -10.00 -0.05 -9.14 16 13 C 0.48 7.26 6.30 -10.99 -0.07 7.19 16 14 O -0.51 -10.56 13.58 5.54 0.08 -10.49 16 15 C 0.10 0.99 6.14 -5.19 -0.03 0.96 16 16 N -0.36 -5.02 3.19 -59.97 -0.19 -5.21 16 17 N -0.07 -1.12 13.93 60.35 0.84 -0.28 16 18 N -0.04 -0.68 13.37 60.35 0.81 0.13 16 19 N -0.33 -5.28 12.00 32.32 0.39 -4.89 16 20 C 0.30 4.33 7.77 -155.22 -1.21 3.12 16 21 C -0.04 -0.44 5.86 -104.97 -0.62 -1.06 16 22 C -0.06 -0.62 9.70 -39.21 -0.38 -1.00 16 23 C -0.12 -0.92 10.03 -39.64 -0.40 -1.31 16 24 C -0.09 -0.71 10.04 -39.51 -0.40 -1.10 16 25 C -0.11 -1.00 10.03 -39.64 -0.40 -1.40 16 26 C -0.10 -1.03 8.64 -39.22 -0.34 -1.37 16 27 C -0.03 -0.71 10.85 -17.03 -0.18 -0.89 16 28 N -0.26 -7.35 10.42 30.80 0.32 -7.03 16 29 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 31 H 0.40 3.97 8.83 -40.82 -0.36 3.61 16 32 H 0.13 0.89 5.94 -51.93 -0.31 0.58 16 33 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.14 1.25 7.98 -52.49 -0.42 0.83 16 35 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.40 3.81 -52.49 -0.20 1.20 16 39 H 0.17 4.46 5.92 -52.49 -0.31 4.15 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -36.54 346.89 -5.29 -41.83 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.26 Total: 8.62 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -5.03 Total: -8.09 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 2.72 Total: -50.37 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.54 -5.29 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544158859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.993 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds