Wall clock time and date at job start Tue Mar 31 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86794 * 120.00096 * 2 1 4 4 H 1.48497 * 109.47257 * 274.97851 * 3 2 1 5 5 H 1.48504 * 109.47541 * 34.97991 * 3 2 1 6 6 H 1.48502 * 109.47185 * 154.98254 * 3 2 1 7 7 C 1.38982 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00180 * 185.94970 * 7 2 1 9 9 N 1.37329 * 120.00024 * 5.95340 * 7 2 1 10 10 C 1.36495 * 126.06831 * 174.11753 * 9 7 2 11 11 C 1.35677 * 107.50896 * 180.02562 * 10 9 7 12 12 N 1.40596 * 126.08647 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00102 * 179.97438 * 12 11 10 14 14 O 1.21302 * 120.00278 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99681 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.46817 * 180.02562 * 15 13 12 17 17 N 1.40593 * 127.39750 * 271.02692 * 16 15 13 18 18 N 1.28897 * 106.85976 * 179.82864 * 17 16 15 19 19 N 1.28414 * 110.39239 * 0.45211 * 18 17 16 20 20 C 1.31627 * 110.50090 * 359.70717 * 19 18 17 21 21 C 1.48022 * 126.48155 * 180.02562 * 20 19 18 22 22 C 1.39473 * 120.12995 * 340.98100 * 21 20 19 23 23 C 1.37989 * 119.85652 * 179.72746 * 22 21 20 24 24 C 1.38334 * 120.13653 * 0.57445 * 23 22 21 25 25 C 1.38339 * 120.27273 * 359.70012 * 24 23 22 26 26 C 1.37978 * 120.13626 * 0.02562 * 25 24 23 27 27 C 1.40656 * 107.83524 * 359.97438 * 11 10 9 28 28 N 1.30910 * 108.38375 * 0.02562 * 27 11 10 29 29 H 0.97004 * 119.99705 * 0.02562 * 1 2 3 30 30 H 1.07999 * 126.24570 * 359.76190 * 10 9 7 31 31 H 0.96998 * 119.99614 * 359.97438 * 12 11 10 32 32 H 1.09004 * 109.46637 * 299.99688 * 15 13 12 33 33 H 1.08997 * 109.47480 * 60.00013 * 15 13 12 34 34 H 1.07998 * 120.07604 * 0.02575 * 22 21 20 35 35 H 1.08007 * 119.93193 * 180.30177 * 23 22 21 36 36 H 1.08005 * 119.86582 * 179.72473 * 24 23 22 37 37 H 1.08002 * 119.93010 * 180.02562 * 25 24 23 38 38 H 1.08000 * 120.06711 * 180.02562 * 26 25 24 39 39 H 1.07995 * 125.80737 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3893 2.1071 -1.3947 5 1 1.5011 2.6200 0.8026 6 1 3.5932 1.4120 0.5921 7 6 2.0079 -1.2036 0.0005 8 1 3.0835 -1.2062 0.0975 9 7 1.3267 -2.3898 -0.1223 10 6 1.8862 -3.6283 -0.2495 11 6 0.8733 -4.5260 -0.3434 12 7 1.0109 -5.9178 -0.4875 13 6 -0.0846 -6.6985 -0.5689 14 8 -1.1895 -6.2005 -0.5174 15 6 0.0631 -8.1904 -0.7227 16 7 -1.2637 -8.8082 -0.7881 17 7 -2.0468 -9.2649 0.2865 18 7 -3.1375 -9.7315 -0.2176 19 7 -3.1203 -9.6255 -1.4972 20 6 -1.9975 -9.0678 -1.8985 21 6 -1.6096 -8.7782 -3.2972 22 6 -2.2483 -9.4321 -4.3507 23 6 -1.8860 -9.1536 -5.6527 24 6 -0.8835 -8.2368 -5.9137 25 6 -0.2424 -7.5892 -4.8729 26 6 -0.5995 -7.8549 -3.5669 27 6 -0.3392 -3.8167 -0.2711 28 7 -0.0653 -2.5434 -0.1395 29 1 -0.4850 0.8401 -0.0004 30 1 2.9424 -3.8523 -0.2753 31 1 1.8945 -6.3161 -0.5283 32 1 0.6107 -8.4086 -1.6396 33 1 0.6093 -8.5914 0.1310 34 1 -3.0280 -10.1513 -4.1480 35 1 -2.3832 -9.6556 -6.4696 36 1 -0.6004 -8.0254 -6.9344 37 1 0.5393 -6.8742 -5.0830 38 1 -0.0985 -7.3484 -2.7552 39 1 -1.3278 -4.2490 -0.3164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544158859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:04 Heat of formation + Delta-G solvation = 183.627615 kcal Electronic energy + Delta-G solvation = -27959.337561 eV Core-core repulsion = 23906.451794 eV Total energy + Delta-G solvation = -4052.885767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.17764 -41.82401 -40.57264 -40.02872 -36.44167 -35.98441 -35.06479 -34.21127 -32.32237 -32.03289 -31.38965 -30.73261 -29.13552 -26.81591 -25.21283 -24.79690 -23.43575 -22.96971 -22.51731 -21.98747 -21.31326 -19.52446 -18.86023 -18.44069 -18.15995 -17.46445 -17.33768 -17.10544 -16.73858 -16.38013 -15.93317 -15.73070 -15.36630 -15.10778 -15.06593 -14.83624 -14.61711 -14.38333 -14.00062 -13.77055 -13.51595 -13.35979 -13.27671 -12.98187 -12.82861 -12.49098 -12.30708 -12.16852 -12.08022 -11.98944 -11.95420 -11.75023 -11.07597 -10.92074 -10.79785 -10.13572 -10.02036 -9.81369 -8.60292 -8.49071 -6.27078 -0.69614 0.30070 0.35990 0.56564 1.06830 1.25822 1.39277 1.40116 1.58044 1.81497 1.92803 2.18151 2.42610 2.60039 2.79642 2.83360 3.05981 3.08407 3.49736 3.60833 3.74217 3.90840 3.99861 4.12863 4.20606 4.26142 4.41230 4.42050 4.51647 4.56659 4.71766 4.91740 4.98951 5.01086 5.03836 5.26005 5.31574 5.33151 5.41521 5.47789 5.87728 5.93940 6.25177 6.54195 6.70805 7.18253 7.23161 7.44565 7.64949 8.50297 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002729 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.283257 B =10257.442522 C =11251.476826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.006 4.006 3 Si 1.018 2.982 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.240 1.240 7 C -0.353 4.353 8 H 0.145 0.855 9 N -0.167 5.167 10 C -0.069 4.069 11 C -0.045 4.045 12 N -0.596 5.596 13 C 0.481 3.519 14 O -0.568 6.568 15 C 0.100 3.900 16 N -0.357 5.357 17 N -0.089 5.089 18 N -0.060 5.060 19 N -0.349 5.349 20 C 0.306 3.694 21 C -0.063 4.063 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.084 4.084 25 C -0.119 4.119 26 C -0.107 4.107 27 C -0.058 4.058 28 N -0.314 5.314 29 H 0.275 0.725 30 H 0.196 0.804 31 H 0.429 0.571 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -17.551 -12.537 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.163 1.163 7 C -0.484 4.484 8 H 0.162 0.838 9 N 0.064 4.936 10 C -0.220 4.220 11 C -0.151 4.151 12 N -0.242 5.242 13 C 0.266 3.734 14 O -0.446 6.446 15 C -0.025 4.025 16 N -0.153 5.153 17 N -0.074 5.074 18 N -0.055 5.055 19 N -0.201 5.201 20 C 0.032 3.968 21 C -0.067 4.067 22 C -0.091 4.091 23 C -0.133 4.133 24 C -0.103 4.103 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.234 4.234 28 N -0.146 5.146 29 H 0.085 0.915 30 H 0.213 0.787 31 H 0.268 0.732 32 H 0.197 0.803 33 H 0.196 0.804 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.138 0.862 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.672 -16.420 -11.282 21.010 hybrid contribution 0.967 0.377 0.128 1.045 sum 7.639 -16.043 -11.154 20.979 Atomic orbital electron populations 1.70412 1.08543 1.29072 1.37324 1.26883 0.96378 1.04442 0.94108 0.84590 0.78597 0.74199 0.78927 1.19105 1.20553 1.16319 1.20649 0.93485 0.80917 1.53303 0.83801 1.44867 1.03464 1.05426 1.39817 1.22064 0.98976 0.84249 1.16704 1.17174 0.92491 0.83715 1.21714 1.42118 1.09441 1.03022 1.69630 1.20906 0.84588 0.89381 0.78493 1.90735 1.27582 1.75319 1.50962 1.22396 0.79473 0.88528 1.12076 1.51215 1.17084 1.42757 1.04207 1.82434 0.99777 1.15694 1.09538 1.77892 1.12881 1.12585 1.02174 1.74619 1.18533 1.22645 1.04318 1.23969 0.87894 0.93652 0.91293 1.17633 1.01217 1.02640 0.85215 1.21417 0.97801 0.97931 0.91949 1.21544 0.97467 0.98198 0.96076 1.21855 0.93919 0.93678 1.00829 1.21418 1.01020 1.00025 0.91264 1.21485 0.96095 0.96053 0.99091 1.24056 0.98867 0.91332 1.09125 1.78191 0.92480 1.16598 1.27315 0.91496 0.78728 0.73180 0.80327 0.80407 0.84236 0.81843 0.82003 0.83170 0.86174 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.12 11.84 21.66 0.26 -46.86 16 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 3 Si 1.02 37.42 29.56 68.60 2.03 39.45 16 4 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.24 -7.85 7.11 99.48 0.71 -7.14 16 7 C -0.35 -17.84 10.24 84.01 0.86 -16.98 16 8 H 0.14 6.20 7.84 -2.91 -0.02 6.17 16 9 N -0.17 -8.83 3.74 -190.01 -0.71 -9.54 16 10 C -0.07 -2.89 11.49 83.37 0.96 -1.93 16 11 C -0.04 -1.85 6.90 37.73 0.26 -1.59 16 12 N -0.60 -16.28 5.47 -303.92 -1.66 -17.94 16 13 C 0.48 14.03 6.30 87.66 0.55 14.58 16 14 O -0.57 -23.93 13.58 -3.10 -0.04 -23.97 16 15 C 0.10 1.82 6.14 85.63 0.53 2.34 16 16 N -0.36 -9.83 3.19 -343.63 -1.09 -10.92 16 17 N -0.09 -2.99 13.93 37.02 0.52 -2.47 16 18 N -0.06 -2.16 13.37 37.02 0.50 -1.67 16 19 N -0.35 -11.62 12.00 -51.65 -0.62 -12.24 16 20 C 0.31 8.75 7.77 136.80 1.06 9.81 16 21 C -0.06 -1.42 5.86 -20.09 -0.12 -1.54 16 22 C -0.07 -1.26 9.70 22.51 0.22 -1.04 16 23 C -0.12 -1.38 10.03 22.23 0.22 -1.16 16 24 C -0.08 -0.94 10.04 22.32 0.22 -0.71 16 25 C -0.12 -1.76 10.03 22.23 0.22 -1.54 16 26 C -0.11 -2.10 8.64 22.51 0.19 -1.91 16 27 C -0.06 -3.08 10.85 85.42 0.93 -2.15 16 28 N -0.31 -18.51 10.42 -56.46 -0.59 -19.10 16 29 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.20 5.98 8.06 -2.91 -0.02 5.96 16 31 H 0.43 6.67 8.83 -92.71 -0.82 5.85 16 32 H 0.18 1.68 5.94 -2.38 -0.01 1.67 16 33 H 0.18 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.14 2.41 7.98 -2.91 -0.02 2.39 16 35 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.12 2.41 3.81 -2.91 -0.01 2.40 16 39 H 0.16 8.64 5.92 -2.91 -0.02 8.62 16 Total: -1.00 -88.00 346.89 5.49 -82.51 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.33 Total: 26.42 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.58 Total: -3.68 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -3.41 Total: -120.74 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.04 Total: -23.97 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -88.00 5.49 -82.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544158859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 266.141 kcal (2) G-P(sol) polarization free energy of solvation -88.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds