Wall clock time and date at job start Tue Mar 31 2020 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30872 * 126.20357 * 2 1 4 4 C 1.34572 * 107.29344 * 180.21219 * 3 2 1 5 5 C 1.47798 * 126.02702 * 179.76777 * 4 3 2 6 6 O 1.21574 * 119.99734 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99846 * 359.97438 * 5 4 3 8 8 C 1.39850 * 119.99622 * 174.89645 * 7 5 4 9 9 C 1.39313 * 119.95476 * 325.51916 * 8 7 5 10 10 C 1.38480 * 120.42989 * 179.72446 * 9 8 7 11 11 C 1.37689 * 120.32103 * 0.55176 * 10 9 8 12 12 C 1.40744 * 119.89194 * 359.72542 * 11 10 9 13 13 C 1.41399 * 120.21037 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00273 * 205.16530 * 13 12 11 15 15 C 1.39938 * 120.00060 * 25.16645 * 13 12 11 16 16 N 1.30832 * 119.99671 * 16.81584 * 15 13 12 17 17 Si 1.86801 * 120.00153 * 196.80801 * 15 13 12 18 18 H 1.48506 * 109.46950 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46919 * 120.00289 * 17 15 13 20 20 H 1.48497 * 109.47269 * 240.00253 * 17 15 13 21 21 C 1.38263 * 119.94828 * 145.79310 * 8 7 5 22 22 N 1.31579 * 107.94677 * 359.76675 * 4 3 2 23 23 N 1.28842 * 108.70935 * 359.97438 * 22 4 3 24 24 C 1.40098 * 125.77267 * 179.97438 * 23 22 4 25 25 N 1.33633 * 125.59486 * 0.02961 * 24 23 22 26 26 C 1.30803 * 109.79270 * 179.97438 * 25 24 23 27 27 N 1.34431 * 108.19650 * 0.02562 * 26 25 24 28 28 H 0.97005 * 126.77925 * 180.02562 * 27 26 25 29 29 N 1.31148 * 125.59985 * 179.71842 * 24 23 22 30 30 H 1.08996 * 109.47695 * 270.17454 * 1 2 3 31 31 H 1.09000 * 109.47290 * 30.17897 * 1 2 3 32 32 H 1.09001 * 109.46496 * 150.17902 * 1 2 3 33 33 H 0.96991 * 119.99787 * 354.89385 * 7 5 4 34 34 H 1.08003 * 119.77923 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.83749 * 180.25228 * 10 9 8 36 36 H 1.08001 * 120.05093 * 179.74560 * 11 10 9 37 37 H 0.97000 * 119.99747 * 180.02562 * 16 15 13 38 38 H 1.07995 * 120.16388 * 359.97438 * 21 8 7 39 39 H 1.08001 * 125.89970 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5531 0.6199 -0.0048 5 6 4.7628 1.4690 -0.0114 6 8 5.8652 0.9564 -0.0157 7 7 4.6438 2.8115 -0.0136 8 6 5.7842 3.6146 0.0879 9 6 6.8634 3.1956 0.8629 10 6 7.9997 3.9804 0.9657 11 6 8.0706 5.1899 0.3116 12 6 6.9860 5.6291 -0.4704 13 6 7.0518 6.8698 -1.1455 14 1 6.1433 7.3981 -1.3944 15 6 8.2942 7.4131 -1.4913 16 7 9.3607 6.6553 -1.4976 17 14 8.4299 9.2204 -1.9439 18 1 7.0894 9.8538 -1.8597 19 1 9.3572 9.8981 -1.0026 20 1 8.9512 9.3461 -3.3287 21 6 5.8366 4.8260 -0.5764 22 7 3.5310 -0.6957 -0.0025 23 7 2.3039 -1.0884 0.0040 24 6 1.8703 -2.4206 0.0078 25 7 2.6629 -3.4965 0.0058 26 6 1.9348 -4.5831 0.0110 27 7 0.6402 -4.2209 0.0160 28 1 -0.1285 -4.8126 0.0209 29 7 0.6201 -2.8166 0.0196 30 1 -0.3634 0.0031 1.0276 31 1 -0.3634 0.8884 -0.5166 32 1 -0.3632 -0.8916 -0.5111 33 1 3.7673 3.2205 -0.0856 34 1 6.8150 2.2506 1.3836 35 1 8.8323 3.6444 1.5658 36 1 8.9573 5.8004 0.3981 37 1 10.2219 7.0320 -1.7369 38 1 4.9990 5.1538 -1.1743 39 1 2.3090 -5.5962 0.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556643429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:49 Heat of formation + Delta-G solvation = 193.118360 kcal Electronic energy + Delta-G solvation = -27074.463632 eV Core-core repulsion = 23021.989415 eV Total energy + Delta-G solvation = -4052.474218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.98972 -42.79739 -39.52780 -37.12341 -35.20638 -34.44728 -33.62452 -33.08235 -32.82631 -31.26846 -29.78029 -28.56117 -28.33081 -25.41276 -25.08094 -24.26191 -22.49551 -21.57521 -20.95114 -20.52949 -19.77255 -19.25084 -18.09423 -17.56734 -17.48897 -16.78284 -15.90722 -15.59652 -15.51835 -15.08791 -14.83557 -14.49894 -14.19869 -13.94873 -13.49897 -13.37097 -12.99807 -12.84415 -12.73470 -12.19800 -12.10437 -11.81241 -11.62812 -11.15761 -11.11023 -10.89785 -10.88563 -10.86414 -10.71308 -10.48574 -10.25948 -10.21286 -9.62994 -9.53436 -9.51914 -9.17215 -8.92644 -7.40869 -6.88932 -6.66872 -4.30205 0.35194 0.99785 1.22649 1.80057 2.11399 2.38450 2.83255 2.90002 3.11963 3.14784 3.18300 3.26859 3.53101 3.67150 3.73903 3.90387 3.99467 4.36542 4.70576 4.76893 4.89898 5.11238 5.13304 5.22304 5.44592 5.72691 5.75891 5.95979 6.21895 6.25184 6.35280 6.59295 6.77284 6.99077 7.02559 7.09224 7.10974 7.30632 7.61524 7.64858 7.80907 8.03864 8.09224 8.18918 8.34713 8.57048 8.72387 8.95128 9.02167 10.26657 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.002031 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.427412 B =13780.864673 C =14375.084885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.247 3.753 3 N -0.469 5.469 4 C 0.172 3.828 5 C 0.605 3.395 6 O -0.491 6.491 7 N -0.641 5.641 8 C 0.152 3.848 9 C -0.225 4.225 10 C -0.094 4.094 11 C -0.165 4.165 12 C 0.121 3.879 13 C -0.463 4.463 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.794 5.794 17 Si 0.908 3.092 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.237 4.237 22 N -0.225 5.225 23 N -0.234 5.234 24 C 0.463 3.537 25 N -0.518 5.518 26 C 0.294 3.706 27 N -0.468 5.468 28 H 0.452 0.548 29 N -0.296 5.296 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.410 0.590 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.279 0.721 38 H 0.098 0.902 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.540 -20.072 2.762 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.029 4.029 3 N -0.195 5.195 4 C -0.109 4.109 5 C 0.386 3.614 6 O -0.361 6.361 7 N -0.285 5.285 8 C 0.061 3.939 9 C -0.246 4.246 10 C -0.113 4.113 11 C -0.185 4.185 12 C 0.118 3.882 13 C -0.493 4.493 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.259 4.259 22 N -0.059 5.059 23 N -0.027 5.027 24 C 0.094 3.906 25 N -0.247 5.247 26 C -0.006 4.006 27 N -0.188 5.188 28 H 0.300 0.700 29 N -0.132 5.132 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -19.150 -19.947 2.716 27.785 hybrid contribution -0.870 0.051 -0.357 0.942 sum -20.020 -19.897 2.359 28.324 Atomic orbital electron populations 1.20517 0.82210 1.05569 1.05017 1.25300 0.97841 0.80501 0.99237 1.71436 1.00489 1.26801 1.20743 1.24207 0.93074 0.88555 1.05087 1.16178 0.84762 0.81901 0.78541 1.90882 1.24775 1.73159 1.47331 1.43077 1.10469 1.04146 1.70855 1.17393 0.86562 0.91312 0.98615 1.20330 0.95422 1.01951 1.06939 1.20573 0.95943 0.95230 0.99556 1.21393 1.00777 0.96725 0.99615 1.17374 0.89978 0.91638 0.89189 1.19538 0.93062 1.03545 1.33157 0.90374 1.25899 0.95359 0.99614 0.93346 1.69847 1.00436 1.36386 1.35279 0.86273 0.79434 0.82534 0.78511 1.18438 1.19772 1.20103 1.20720 1.01787 0.95987 1.07383 1.74744 0.98887 1.13661 1.18646 1.43144 1.04650 1.02570 1.52338 1.19358 0.87230 0.83828 1.00212 1.70383 1.33953 0.95833 1.24497 1.26308 0.80317 1.00158 0.93776 1.48036 1.09729 1.04256 1.56815 0.69964 1.78223 1.15771 0.89922 1.29283 0.88726 0.87913 0.88583 0.75392 0.88066 0.88887 0.86225 0.90969 0.88395 0.74391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 9.84 36.00 0.35 -0.21 16 2 C 0.25 3.19 7.94 -155.24 -1.23 1.95 16 3 N -0.47 -7.28 11.10 -8.48 -0.09 -7.38 16 4 C 0.17 3.18 7.95 -156.30 -1.24 1.94 16 5 C 0.61 12.78 7.56 -12.35 -0.09 12.68 16 6 O -0.49 -12.03 14.83 5.30 0.08 -11.96 16 7 N -0.64 -13.07 5.33 -10.78 -0.06 -13.12 16 8 C 0.15 3.65 6.24 -83.79 -0.52 3.13 16 9 C -0.23 -5.62 8.66 -39.09 -0.34 -5.96 16 10 C -0.09 -2.36 10.02 -39.69 -0.40 -2.76 16 11 C -0.17 -4.44 8.69 -38.84 -0.34 -4.78 16 12 C 0.12 3.30 5.57 -106.85 -0.59 2.70 16 13 C -0.46 -12.41 9.05 -37.74 -0.34 -12.76 16 14 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 15 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 16 N -0.79 -21.02 10.94 55.55 0.61 -20.41 16 17 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 21 C -0.24 -5.94 9.70 -38.68 -0.38 -6.32 16 22 N -0.22 -4.11 12.03 32.07 0.39 -3.72 16 23 N -0.23 -3.42 3.52 -10.92 -0.04 -3.46 16 24 C 0.46 5.51 8.74 -320.53 -2.80 2.71 16 25 N -0.52 -5.67 11.20 -14.87 -0.17 -5.84 16 26 C 0.29 1.26 13.12 -90.68 -1.19 0.07 16 27 N -0.47 -1.60 7.44 29.52 0.22 -1.38 16 28 H 0.45 -0.52 8.96 -182.33 -1.63 -2.15 16 29 N -0.30 -2.41 10.41 30.08 0.31 -2.10 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.64 6.33 -51.93 -0.33 0.31 16 33 H 0.41 7.15 8.53 -40.82 -0.35 6.81 16 34 H 0.10 2.51 6.48 -52.48 -0.34 2.17 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.12 3.28 6.17 -52.49 -0.32 2.95 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.24 -0.35 8.06 -52.49 -0.42 -0.78 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -37.85 349.06 -12.36 -50.22 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.64 Total: 5.75 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -9.20 Total: -5.75 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 1.17 Total: -57.41 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.85 -12.36 -50.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556643429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.335 kcal (2) G-P(sol) polarization free energy of solvation -37.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds