Wall clock time and date at job start Tue Mar 31 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48501 * 109.46578 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47219 * 299.99536 * 3 2 1 6 6 H 1.48503 * 109.47145 * 60.00109 * 3 2 1 7 7 C 1.38952 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99638 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00550 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99857 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47354 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00211 * 183.51065 * 13 12 10 15 15 H 1.09005 * 109.46804 * 176.53291 * 14 13 12 16 16 C 1.52999 * 109.47126 * 296.53159 * 14 13 12 17 17 N 1.46499 * 109.47231 * 304.99974 * 16 14 13 18 18 C 1.34773 * 119.99752 * 180.02562 * 17 16 14 19 19 O 1.21571 * 120.00497 * 359.97438 * 18 17 16 20 20 C 1.47756 * 119.99911 * 180.27852 * 18 17 16 21 21 C 1.39350 * 124.11611 * 179.45158 * 20 18 17 22 22 N 1.30092 * 112.14241 * 179.77685 * 21 20 18 23 23 S 1.55920 * 108.75492 * 0.46444 * 22 21 20 24 24 N 1.31491 * 124.11545 * 359.74052 * 20 18 17 25 25 C 1.52994 * 109.47149 * 56.53567 * 14 13 12 26 26 C 1.52992 * 117.50209 * 134.30498 * 25 14 13 27 27 C 1.53004 * 117.49987 * 65.64525 * 25 14 13 28 28 H 0.96999 * 119.99753 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00080 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47197 * 60.00545 * 12 10 9 31 31 H 1.09000 * 109.47404 * 300.00113 * 12 10 9 32 32 H 1.00904 * 111.00178 * 307.46850 * 13 12 10 33 33 H 1.09003 * 109.46888 * 184.99586 * 16 14 13 34 34 H 1.08996 * 109.47206 * 65.00308 * 16 14 13 35 35 H 0.97001 * 120.00276 * 359.97438 * 17 16 14 36 36 H 1.08001 * 123.92751 * 359.97438 * 21 20 18 37 37 H 1.09005 * 115.55018 * 279.97954 * 25 14 13 38 38 H 1.09001 * 117.50342 * 0.02562 * 26 25 14 39 39 H 1.09009 * 117.49818 * 145.02020 * 26 25 14 40 40 H 1.09006 * 117.49926 * 214.97911 * 27 25 14 41 41 H 1.08991 * 117.50165 * 0.02562 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 1.5001 -7.2692 -0.0838 15 1 2.2316 -8.0751 -0.1435 16 6 0.6305 -7.4608 1.1604 17 7 1.4586 -7.3225 2.3609 18 6 0.9026 -7.4534 3.5817 19 8 -0.2860 -7.6858 3.6866 20 6 1.7366 -7.3078 4.7927 21 6 1.2502 -7.4150 6.0941 22 7 2.1863 -7.2511 6.9825 23 16 3.5335 -6.9779 6.2466 24 7 3.0270 -7.0559 4.7736 25 6 0.6158 -7.2895 -1.3322 26 6 0.6604 -8.5423 -2.2092 27 6 1.3137 -7.2454 -2.6931 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3907 -0.0002 30 1 0.6175 -4.9205 -0.8903 31 1 0.6168 -4.9209 0.8897 32 1 2.8695 -5.8820 -0.7465 33 1 0.1820 -8.4541 1.1407 34 1 -0.1567 -6.7070 1.1731 35 1 2.4071 -7.1374 2.2773 36 1 0.2169 -7.6143 6.3369 37 1 -0.3399 -6.7735 -1.2398 38 1 1.3193 -9.3523 -1.8966 39 1 -0.2660 -8.8504 -2.6941 40 1 0.8169 -6.7008 -3.4961 41 1 2.4027 -7.2023 -2.6990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566703956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:28 Heat of formation + Delta-G solvation = 17.652941 kcal Electronic energy + Delta-G solvation = -26629.980633 eV Core-core repulsion = 22673.048864 eV Total energy + Delta-G solvation = -3956.931769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24333 -39.56458 -38.63121 -37.77119 -35.31031 -34.18335 -33.83031 -33.20176 -31.22971 -29.41161 -27.62740 -26.43712 -24.43512 -23.68939 -22.46960 -22.23558 -20.60160 -20.04443 -19.53740 -19.10768 -18.00785 -17.71700 -16.90082 -16.21693 -16.01485 -15.63841 -15.34171 -15.25767 -14.81717 -14.68832 -14.42435 -13.95356 -13.88987 -13.59874 -13.35789 -12.55037 -12.43485 -12.26731 -11.99987 -11.81143 -11.68855 -11.62387 -11.52221 -11.37022 -11.20770 -11.13903 -10.99530 -10.47498 -10.37128 -10.34463 -10.22873 -10.14963 -9.52960 -9.43602 -9.06364 -8.49293 -8.15915 -7.97147 -6.42605 -3.83476 0.25938 1.20980 1.37950 1.43990 2.95103 3.06743 3.15302 3.25966 3.32948 3.61247 3.90462 4.10935 4.27387 4.35069 4.44270 4.66167 4.75640 4.85510 4.94211 4.96929 5.12746 5.21866 5.24605 5.27268 5.30080 5.50409 5.58198 5.76182 5.81310 5.86403 5.97044 5.98030 6.08906 6.19475 6.24072 6.35098 7.10721 7.46269 7.54335 7.56908 8.04873 8.05476 8.59809 9.16876 9.53405 10.04365 10.75133 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007478 B = 0.003556 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.408773 B = 7871.910347 C =10611.740293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.585 6.585 12 C 0.047 3.953 13 N -0.656 5.656 14 C 0.105 3.895 15 H 0.090 0.910 16 C 0.130 3.870 17 N -0.690 5.690 18 C 0.602 3.398 19 O -0.532 6.532 20 C 0.013 3.987 21 C 0.089 3.911 22 N -0.581 5.581 23 S 0.719 5.281 24 N -0.538 5.538 25 C -0.188 4.188 26 C -0.173 4.173 27 C -0.172 4.172 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.355 0.645 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.420 0.580 36 H 0.214 0.786 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -18.623 4.882 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.470 6.470 12 C -0.085 4.085 13 N -0.288 5.288 14 C -0.007 4.007 15 H 0.108 0.892 16 C 0.006 3.994 17 N -0.341 5.341 18 C 0.382 3.618 19 O -0.409 6.409 20 C -0.162 4.162 21 C -0.105 4.105 22 N -0.422 5.422 23 S 0.760 5.240 24 N -0.388 5.388 25 C -0.208 4.208 26 C -0.211 4.211 27 C -0.210 4.210 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.258 0.742 36 H 0.230 0.770 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.363 -18.255 6.425 19.642 hybrid contribution -1.883 0.816 -1.654 2.636 sum 1.480 -17.438 4.771 18.140 Atomic orbital electron populations 1.69624 1.05936 1.28054 1.50598 1.25262 0.95619 0.99711 0.97326 0.85814 0.79710 0.81191 0.77720 1.19223 1.20750 1.20748 1.19743 0.93363 0.82234 1.47527 0.87899 1.41863 1.09190 1.04640 1.64248 1.19813 0.88364 0.84766 0.84431 1.90518 1.13733 1.87089 1.55613 1.21713 0.94768 0.90714 1.01342 1.60342 1.16028 0.99382 1.53071 1.21468 0.94466 0.93635 0.91082 0.89204 1.21436 0.93316 1.02149 0.82504 1.45627 1.14369 1.69945 1.04184 1.16726 0.85768 0.77666 0.81649 1.90825 1.14174 1.49623 1.86238 1.22528 0.88936 1.07470 0.97286 1.23770 1.01671 0.98884 0.86202 1.72256 1.07715 1.23220 1.39008 1.79113 1.14759 1.45934 0.84167 1.72490 1.15803 1.19950 1.30567 1.23017 1.02220 1.03047 0.92524 1.22961 1.02859 0.91484 1.03786 1.22915 1.00271 1.00921 0.96863 0.91919 0.77507 0.93174 0.89794 0.82455 0.90632 0.90828 0.74227 0.76987 0.87325 0.88738 0.88876 0.88602 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 10 C 0.44 10.18 7.81 -10.99 -0.09 10.10 16 11 O -0.59 -15.45 15.70 5.55 0.09 -15.36 16 12 C 0.05 0.79 5.50 -4.98 -0.03 0.77 16 13 N -0.66 -9.42 5.55 -107.99 -0.60 -10.02 16 14 C 0.10 1.13 2.81 -67.72 -0.19 0.93 16 15 H 0.09 0.86 7.95 -51.93 -0.41 0.45 16 16 C 0.13 1.49 4.76 -4.04 -0.02 1.47 16 17 N -0.69 -8.73 5.39 -61.28 -0.33 -9.06 16 18 C 0.60 8.25 7.82 -12.37 -0.10 8.15 16 19 O -0.53 -8.29 16.81 5.30 0.09 -8.20 16 20 C 0.01 0.16 6.81 -83.71 -0.57 -0.41 16 21 C 0.09 0.98 11.22 -17.87 -0.20 0.78 16 22 N -0.58 -6.38 11.41 19.42 0.22 -6.16 16 23 S 0.72 6.78 23.69 -107.50 -2.55 4.23 16 24 N -0.54 -6.54 11.00 23.17 0.25 -6.28 16 25 C -0.19 -1.87 3.80 -90.62 -0.34 -2.21 16 26 C -0.17 -1.45 10.18 -26.70 -0.27 -1.72 16 27 C -0.17 -1.68 10.04 -26.69 -0.27 -1.95 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 30 H 0.05 0.78 6.58 -51.93 -0.34 0.44 16 31 H 0.08 1.41 6.68 -51.93 -0.35 1.06 16 32 H 0.35 5.38 8.18 -39.29 -0.32 5.06 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.94 6.82 -51.93 -0.35 0.58 16 35 H 0.42 5.46 7.73 -40.82 -0.32 5.14 16 36 H 0.21 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.11 1.14 7.70 -51.93 -0.40 0.74 16 38 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -32.62 368.41 -8.80 -41.42 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -4.86 Total: 18.02 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -2.31 Total: 7.94 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: 0.21 Total: -69.65 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.18 Total: -23.56 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -2.55 Total: 4.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.62 -8.80 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566703956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.077 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds