Wall clock time and date at job start Tue Mar 31 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48501 * 109.46578 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47219 * 299.99536 * 3 2 1 6 6 H 1.48503 * 109.47145 * 60.00109 * 3 2 1 7 7 C 1.38952 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99638 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00550 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99857 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47354 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00211 * 183.51065 * 13 12 10 15 15 H 1.09005 * 109.46804 * 176.53291 * 14 13 12 16 16 C 1.52999 * 109.47126 * 296.53159 * 14 13 12 17 17 N 1.46499 * 109.47231 * 304.99974 * 16 14 13 18 18 C 1.34773 * 119.99752 * 180.02562 * 17 16 14 19 19 O 1.21571 * 120.00497 * 359.97438 * 18 17 16 20 20 C 1.47756 * 119.99911 * 180.27852 * 18 17 16 21 21 C 1.39350 * 124.11611 * 179.45158 * 20 18 17 22 22 N 1.30092 * 112.14241 * 179.77685 * 21 20 18 23 23 S 1.55920 * 108.75492 * 0.46444 * 22 21 20 24 24 N 1.31491 * 124.11545 * 359.74052 * 20 18 17 25 25 C 1.52994 * 109.47149 * 56.53567 * 14 13 12 26 26 C 1.52992 * 117.50209 * 134.30498 * 25 14 13 27 27 C 1.53004 * 117.49987 * 65.64525 * 25 14 13 28 28 H 0.96999 * 119.99753 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00080 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47197 * 60.00545 * 12 10 9 31 31 H 1.09000 * 109.47404 * 300.00113 * 12 10 9 32 32 H 1.00904 * 111.00178 * 307.46850 * 13 12 10 33 33 H 1.09003 * 109.46888 * 184.99586 * 16 14 13 34 34 H 1.08996 * 109.47206 * 65.00308 * 16 14 13 35 35 H 0.97001 * 120.00276 * 359.97438 * 17 16 14 36 36 H 1.08001 * 123.92751 * 359.97438 * 21 20 18 37 37 H 1.09005 * 115.55018 * 279.97954 * 25 14 13 38 38 H 1.09001 * 117.50342 * 0.02562 * 26 25 14 39 39 H 1.09009 * 117.49818 * 145.02020 * 26 25 14 40 40 H 1.09006 * 117.49926 * 214.97911 * 27 25 14 41 41 H 1.08991 * 117.50165 * 0.02562 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 1.5001 -7.2692 -0.0838 15 1 2.2316 -8.0751 -0.1435 16 6 0.6305 -7.4608 1.1604 17 7 1.4586 -7.3225 2.3609 18 6 0.9026 -7.4534 3.5817 19 8 -0.2860 -7.6858 3.6866 20 6 1.7366 -7.3078 4.7927 21 6 1.2502 -7.4150 6.0941 22 7 2.1863 -7.2511 6.9825 23 16 3.5335 -6.9779 6.2466 24 7 3.0270 -7.0559 4.7736 25 6 0.6158 -7.2895 -1.3322 26 6 0.6604 -8.5423 -2.2092 27 6 1.3137 -7.2454 -2.6931 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3907 -0.0002 30 1 0.6175 -4.9205 -0.8903 31 1 0.6168 -4.9209 0.8897 32 1 2.8695 -5.8820 -0.7465 33 1 0.1820 -8.4541 1.1407 34 1 -0.1567 -6.7070 1.1731 35 1 2.4071 -7.1374 2.2773 36 1 0.2169 -7.6143 6.3369 37 1 -0.3399 -6.7735 -1.2398 38 1 1.3193 -9.3523 -1.8966 39 1 -0.2660 -8.8504 -2.6941 40 1 0.8169 -6.7008 -3.4961 41 1 2.4027 -7.2023 -2.6990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566703956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:28 Heat of formation + Delta-G solvation = -8.753102 kcal Electronic energy + Delta-G solvation = -26631.125685 eV Core-core repulsion = 22673.048864 eV Total energy + Delta-G solvation = -3958.076821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14505 -40.67602 -39.97737 -39.12513 -36.31483 -35.95873 -34.97018 -34.29912 -33.25638 -30.53197 -28.71145 -27.80290 -26.11035 -24.71138 -23.20115 -23.09051 -21.75050 -21.26948 -20.49409 -20.36774 -19.88203 -18.76818 -18.32432 -17.19721 -17.02087 -17.00838 -16.43531 -16.31510 -16.24614 -15.91765 -15.88991 -15.32610 -15.22175 -14.93805 -14.51548 -14.06723 -13.56937 -13.44532 -13.28177 -13.20709 -12.96590 -12.82378 -12.50400 -12.41443 -12.38965 -12.26045 -12.13429 -12.08177 -12.03359 -11.51928 -11.34401 -11.18545 -11.03498 -10.35669 -10.31258 -10.01995 -10.01398 -9.37567 -8.47416 -5.96124 -0.63133 0.36968 0.47314 0.63755 1.35485 1.40714 1.54837 1.97380 2.04816 2.08715 2.28274 2.79368 3.06444 3.20185 3.41456 3.48226 3.61412 3.77257 3.93541 4.06821 4.11897 4.15809 4.30730 4.31966 4.41815 4.48130 4.53750 4.57125 4.75335 4.82914 4.94650 5.06243 5.24958 5.27999 5.30247 5.39024 5.40408 5.85484 6.06814 6.36685 6.44876 6.58614 7.02769 7.11892 7.55539 8.10163 8.70276 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007478 B = 0.003556 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.408773 B = 7871.910347 C =10611.740293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.068 3.932 13 N -0.663 5.663 14 C 0.115 3.885 15 H 0.109 0.891 16 C 0.130 3.870 17 N -0.688 5.688 18 C 0.599 3.401 19 O -0.557 6.557 20 C -0.006 4.006 21 C 0.088 3.912 22 N -0.597 5.597 23 S 0.785 5.215 24 N -0.564 5.564 25 C -0.197 4.197 26 C -0.152 4.152 27 C -0.183 4.183 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.351 0.649 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.419 0.581 36 H 0.227 0.773 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -19.410 4.959 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.064 4.064 13 N -0.295 5.295 14 C 0.005 3.995 15 H 0.127 0.873 16 C 0.006 3.994 17 N -0.338 5.338 18 C 0.380 3.620 19 O -0.436 6.436 20 C -0.179 4.179 21 C -0.104 4.104 22 N -0.439 5.439 23 S 0.826 5.174 24 N -0.416 5.416 25 C -0.218 4.218 26 C -0.189 4.189 27 C -0.220 4.220 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.256 0.744 36 H 0.243 0.757 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.467 -19.067 6.489 20.437 hybrid contribution -1.826 1.002 -1.636 2.649 sum 1.641 -18.065 4.853 18.777 Atomic orbital electron populations 1.69688 1.06881 1.29178 1.50499 1.26036 0.96500 1.02415 0.96326 0.84886 0.78110 0.77162 0.78288 1.19652 1.19533 1.19795 1.19701 0.92687 0.83999 1.49751 0.90223 1.41947 1.09236 1.04847 1.65134 1.20857 0.88277 0.86119 0.82072 1.90486 1.15597 1.87932 1.56577 1.21466 0.94429 0.88233 1.02319 1.60316 1.15923 0.99988 1.53232 1.21468 0.94751 0.92020 0.91223 0.87306 1.21511 0.92990 1.02585 0.82293 1.45673 1.14324 1.69429 1.04375 1.16915 0.85630 0.77220 0.82221 1.90800 1.15141 1.50958 1.86674 1.22401 0.89093 1.09106 0.97337 1.23909 1.02348 0.98517 0.85673 1.72196 1.08477 1.23778 1.39472 1.78832 1.13142 1.43234 0.82146 1.72325 1.15954 1.20553 1.32747 1.22918 1.01834 1.04905 0.92126 1.23040 1.03161 0.90905 1.01836 1.22945 1.00231 1.02326 0.96486 0.91367 0.77236 0.91377 0.89344 0.82867 0.89095 0.92119 0.74391 0.75677 0.87812 0.87363 0.87862 0.88954 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 10 C 0.44 20.60 7.81 87.66 0.68 21.29 16 11 O -0.62 -33.40 15.70 -3.05 -0.05 -33.44 16 12 C 0.07 2.27 5.50 85.56 0.47 2.74 16 13 N -0.66 -18.53 5.55 -495.58 -2.75 -21.29 16 14 C 0.12 2.30 2.81 44.91 0.13 2.43 16 15 H 0.11 1.82 7.95 -2.38 -0.02 1.80 16 16 C 0.13 2.82 4.76 86.38 0.41 3.23 16 17 N -0.69 -16.98 5.39 -466.06 -2.51 -19.49 16 18 C 0.60 16.27 7.82 86.76 0.68 16.95 16 19 O -0.56 -17.28 16.81 -3.94 -0.07 -17.35 16 20 C -0.01 -0.15 6.81 41.98 0.29 0.14 16 21 C 0.09 1.88 11.22 85.22 0.96 2.83 16 22 N -0.60 -12.37 11.41 -92.46 -1.05 -13.43 16 23 S 0.79 13.70 23.69 -56.49 -1.34 12.36 16 24 N -0.56 -13.25 11.00 -80.60 -0.89 -14.14 16 25 C -0.20 -3.58 3.80 -10.80 -0.04 -3.62 16 26 C -0.15 -2.14 10.18 30.61 0.31 -1.83 16 27 C -0.18 -3.28 10.04 30.62 0.31 -2.97 16 28 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.39 19.57 7.90 -92.70 -0.73 18.84 16 30 H 0.07 2.06 6.58 -2.39 -0.02 2.04 16 31 H 0.09 2.93 6.68 -2.39 -0.02 2.91 16 32 H 0.35 10.46 8.18 -89.69 -0.73 9.72 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.50 6.82 -2.39 -0.02 1.48 16 35 H 0.42 10.62 7.73 -92.71 -0.72 9.90 16 36 H 0.23 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.10 2.02 7.70 -2.38 -0.02 2.00 16 38 H 0.11 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -70.32 368.41 -3.56 -73.88 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -1.06 Total: 46.01 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 5.47 Total: 22.87 kcal Atomic # 7 Polarization: -140.91 SS G_CDS: -8.54 Total: -149.45 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.11 Total: -50.79 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 13.70 SS G_CDS: -1.34 Total: 12.36 kcal Total: -70.32 -3.56 -73.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566703956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.122 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds