Wall clock time and date at job start Tue Mar 31 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.85377 * 334.66612 * 14 13 11 16 16 C 1.53787 * 113.61241 * 105.86495 * 14 13 11 17 17 C 1.53956 * 87.01963 * 139.94936 * 16 14 13 18 18 H 1.09000 * 113.61282 * 89.20046 * 17 16 14 19 19 N 1.46901 * 113.66501 * 220.06214 * 17 16 14 20 20 C 1.46903 * 111.00135 * 252.55881 * 19 17 16 21 21 C 1.50704 * 109.46860 * 180.02562 * 20 19 17 22 22 C 1.38230 * 120.40387 * 90.00343 * 21 20 19 23 23 N 1.31848 * 120.81987 * 179.97438 * 22 21 20 24 24 C 1.31862 * 121.75019 * 0.02562 * 23 22 21 25 25 C 1.38422 * 120.72838 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.44602 * 180.02562 * 25 24 23 27 27 C 1.38588 * 120.40190 * 269.72494 * 21 20 19 28 28 C 1.53771 * 87.11165 * 334.63741 * 17 16 14 29 29 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 32 32 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 33 33 H 1.09000 * 113.61246 * 254.52648 * 16 14 13 34 34 H 1.09004 * 113.61592 * 25.42790 * 16 14 13 35 35 H 1.00897 * 110.99990 * 16.51686 * 19 17 16 36 36 H 1.08995 * 109.47403 * 300.00451 * 20 19 17 37 37 H 1.09000 * 109.46818 * 60.00187 * 20 19 17 38 38 H 1.08001 * 119.59100 * 0.02562 * 22 21 20 39 39 H 1.08001 * 119.63616 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.80555 * 359.97438 * 27 21 20 41 41 H 1.09000 * 113.61410 * 270.81205 * 28 17 16 42 42 H 1.09000 * 113.69120 * 139.92107 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.3322 -7.7932 0.4277 16 6 2.4750 -8.4266 -1.3580 17 6 2.8601 -9.6881 -0.5640 18 1 2.0068 -10.3077 -0.2880 19 7 3.9511 -10.4592 -1.1749 20 6 3.4470 -11.7045 -1.7692 21 6 4.5923 -12.4671 -2.3841 22 6 5.3023 -13.3869 -1.6354 23 7 6.3053 -14.0590 -2.1652 24 6 6.6717 -13.8845 -3.4198 25 6 6.0080 -12.9805 -4.2313 26 9 6.3879 -12.8066 -5.5161 27 6 4.9426 -12.2589 -3.7087 28 6 3.3252 -8.7453 0.5582 29 1 -0.4850 -0.8401 0.0004 30 1 3.1239 -3.7308 -0.8925 31 1 3.1252 -3.7316 0.8875 32 1 3.8011 -6.1834 -0.0032 33 1 1.5359 -8.5224 -1.9030 34 1 3.2845 -8.0339 -1.9733 35 1 4.4457 -9.9064 -1.8588 36 1 2.9795 -12.3133 -0.9954 37 1 2.7124 -11.4683 -2.5390 38 1 5.0316 -13.5578 -0.6039 39 1 7.4982 -14.4537 -3.8189 40 1 4.4025 -11.5501 -4.3188 41 1 4.3677 -8.4399 0.4678 42 1 3.0724 -9.0968 1.5585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566832316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:45 Heat of formation + Delta-G solvation = -31.734317 kcal Electronic energy + Delta-G solvation = -24751.827563 eV Core-core repulsion = 20772.834240 eV Total energy + Delta-G solvation = -3978.993323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.50782 -40.77080 -40.13509 -38.45799 -35.74735 -33.47705 -32.54930 -32.32650 -31.23392 -29.23283 -26.51790 -26.01001 -24.88927 -24.31673 -23.34552 -22.46062 -20.50648 -20.20045 -18.34232 -17.93181 -17.90062 -17.37987 -16.84547 -16.57822 -16.34168 -16.00631 -15.26028 -15.08489 -14.74221 -14.53541 -14.28060 -14.15342 -13.86229 -13.75971 -13.70481 -13.34341 -13.18751 -12.95047 -12.78746 -12.42723 -12.30500 -12.07757 -11.96487 -11.49068 -11.23841 -11.08260 -10.93569 -10.40732 -10.19284 -10.19022 -9.61193 -9.53486 -9.47719 -9.08362 -9.02303 -8.82281 -8.25169 -6.69797 -6.64362 -4.02463 0.30515 0.46466 2.87130 2.92367 2.99504 3.33164 3.36341 3.38497 3.51426 3.56976 3.76889 3.86518 4.02813 4.11606 4.21803 4.24439 4.29893 4.32947 4.48181 4.58136 4.60528 4.82715 4.99060 5.05781 5.19097 5.20327 5.21807 5.23530 5.38376 5.44213 5.45007 5.49634 5.66754 5.68509 5.73886 5.90054 5.98505 6.02191 6.47299 6.55978 6.77428 7.23543 7.59257 7.89507 8.47236 8.47897 9.24788 10.79495 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.001562 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.460689 B =17923.542349 C =18607.419573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.116 6.116 10 C -0.132 4.132 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.726 5.726 14 C 0.127 3.873 15 H 0.114 0.886 16 C -0.181 4.181 17 C 0.069 3.931 18 H 0.103 0.897 19 N -0.671 5.671 20 C 0.099 3.901 21 C -0.104 4.104 22 C 0.111 3.889 23 N -0.457 5.457 24 C 0.073 3.927 25 C 0.049 3.951 26 F -0.130 7.130 27 C -0.105 4.105 28 C -0.132 4.132 29 H 0.278 0.722 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.345 0.655 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 -29.101 -5.020 32.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.110 5.890 10 C -0.283 4.283 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.379 5.379 14 C 0.021 3.979 15 H 0.132 0.868 16 C -0.222 4.222 17 C -0.042 4.042 18 H 0.121 0.879 19 N -0.302 5.302 20 C -0.030 4.030 21 C -0.107 4.107 22 C -0.047 4.047 23 N -0.165 5.165 24 C -0.085 4.085 25 C 0.027 3.973 26 F -0.108 7.108 27 C -0.132 4.132 28 C -0.171 4.171 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.165 0.835 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.183 0.817 39 H 0.184 0.816 40 H 0.164 0.836 41 H 0.109 0.891 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.913 -28.697 -3.949 30.955 hybrid contribution 1.482 -0.248 -1.702 2.270 sum 12.395 -28.945 -5.650 31.990 Atomic orbital electron populations 1.70806 1.06700 1.30949 1.43297 1.26061 0.96325 1.02143 0.92987 0.83330 0.74766 0.74197 0.76715 1.20254 1.21121 1.21142 1.23704 0.96026 0.92199 1.63703 0.91614 1.84813 1.08110 0.98829 1.97229 1.23331 1.05141 0.94623 1.05234 1.20331 0.86638 0.86389 0.74865 1.90695 1.15401 1.85604 1.47595 1.45930 1.09738 1.05090 1.77121 1.22231 0.99362 0.80238 0.96077 0.86766 1.24245 1.02712 0.97032 0.98218 1.22896 0.93201 0.92126 0.95945 0.87875 1.60499 1.26116 1.06417 1.37120 1.20896 0.92585 0.91364 0.98187 1.20754 0.98774 0.98087 0.93077 1.22826 0.90250 0.91300 1.00317 1.67796 1.13933 1.23325 1.11398 1.22966 0.99667 0.96200 0.89709 1.18811 0.97663 1.00201 0.80612 1.91547 1.90403 1.94375 1.34497 1.21635 0.96127 0.99406 0.96049 1.23444 0.99971 0.94873 0.98817 0.91007 0.89000 0.88921 0.76646 0.90871 0.89541 0.83536 0.89021 0.93373 0.81680 0.81562 0.83631 0.89126 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.42 13.67 55.49 0.76 -26.66 16 2 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 3 Si 1.08 24.82 29.92 -169.99 -5.09 19.73 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.61 -17.48 9.50 30.94 0.29 -17.19 16 8 H 0.07 1.80 7.80 -52.49 -0.41 1.40 16 9 S -0.12 -3.11 19.60 -107.50 -2.11 -5.21 16 10 C -0.13 -2.62 6.16 36.01 0.22 -2.40 16 11 C 0.53 9.55 7.85 -10.99 -0.09 9.47 16 12 O -0.52 -11.41 15.48 5.55 0.09 -11.32 16 13 N -0.73 -8.98 5.36 -53.01 -0.28 -9.26 16 14 C 0.13 1.31 4.21 -67.11 -0.28 1.03 16 15 H 0.11 1.40 7.50 -51.93 -0.39 1.01 16 16 C -0.18 -1.50 7.51 -25.82 -0.19 -1.69 16 17 C 0.07 0.43 4.18 -66.81 -0.28 0.15 16 18 H 0.10 0.59 7.87 -51.93 -0.41 0.18 16 19 N -0.67 -3.74 6.61 -107.04 -0.71 -4.45 16 20 C 0.10 0.45 5.68 -4.97 -0.03 0.42 16 21 C -0.10 -0.57 5.41 -104.49 -0.57 -1.14 16 22 C 0.11 0.70 10.86 -17.55 -0.19 0.51 16 23 N -0.46 -3.56 10.36 -13.20 -0.14 -3.69 16 24 C 0.07 0.49 11.17 -17.47 -0.20 0.30 16 25 C 0.05 0.33 7.35 -39.27 -0.29 0.04 16 26 F -0.13 -1.00 17.28 2.25 0.04 -0.96 16 27 C -0.11 -0.61 9.85 -39.21 -0.39 -1.00 16 28 C -0.13 -0.97 7.63 -25.92 -0.20 -1.16 16 29 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.40 3.83 8.71 -40.82 -0.36 3.48 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.69 7.83 -51.93 -0.41 0.29 16 35 H 0.35 1.93 8.19 -39.29 -0.32 1.60 16 36 H 0.09 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.05 0.21 8.09 -51.93 -0.42 -0.21 16 38 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -35.52 378.50 -9.61 -45.13 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.60 Total: 2.74 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.27 Total: -11.74 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.37 Total: -44.07 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.52 -9.61 -45.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566832316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.396 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds